| Back to Build/check report for BioC 3.11 experimental data | 
This page was generated on 2020-10-15 20:45:52 -0400 (Thu, 15 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE msdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 237/391 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| msdata 0.28.0 Steffen Neumann 
 | malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] |  | 
| Package: msdata | 
| Version: 0.28.0 | 
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:msdata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings msdata_0.28.0.tar.gz | 
| StartedAt: 2020-10-15 13:45:32 -0400 (Thu, 15 Oct 2020) | 
| EndedAt: 2020-10-15 13:48:22 -0400 (Thu, 15 Oct 2020) | 
| EllapsedTime: 169.9 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: msdata.Rcheck | 
| Warnings: 0 | 
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### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:msdata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings msdata_0.28.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/msdata.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘msdata/DESCRIPTION’ ... OK
* this is package ‘msdata’ version ‘0.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘msdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 581.0Mb
  sub-directories of 1Mb or more:
    TripleTOF-SWATH  106.6Mb
    cdf                3.5Mb
    fticr              5.8Mb
    ident              9.4Mb
    iontrap           21.4Mb
    lockmass           4.1Mb
    microtofq         16.8Mb
    mzid               3.9Mb
    proteomics       368.2Mb
    quant              6.8Mb
    sciex             34.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
msdata 9.372  0.373   9.936
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.11-data-experiment/meat/msdata.Rcheck/00check.log’
for details.
msdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL msdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘msdata’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (msdata)
msdata.Rcheck/msdata-Ex.timings
| name | user | system | elapsed | |
| msdata | 9.372 | 0.373 | 9.936 | |
| proteomics | 0.867 | 0.047 | 3.000 | |
| sciexdata | 0.000 | 0.000 | 0.001 | |