| Back to Build/check report for BioC 3.13 experimental data |
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This page was generated on 2021-10-16 15:58:41 -0400 (Sat, 16 Oct 2021).
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To the developers/maintainers of the HiCDataHumanIMR90 package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 178/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| HiCDataHumanIMR90 1.12.0 (landing page) Nicolas Servant
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: HiCDataHumanIMR90 |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:HiCDataHumanIMR90.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings HiCDataHumanIMR90_1.12.0.tar.gz |
| StartedAt: 2021-10-16 13:21:52 -0400 (Sat, 16 Oct 2021) |
| EndedAt: 2021-10-16 13:24:18 -0400 (Sat, 16 Oct 2021) |
| EllapsedTime: 146.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HiCDataHumanIMR90.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:HiCDataHumanIMR90.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings HiCDataHumanIMR90_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/HiCDataHumanIMR90.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HiCDataHumanIMR90/DESCRIPTION’ ... OK
* this is package ‘HiCDataHumanIMR90’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.git_fetch_output.txt
.git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HiCDataHumanIMR90’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 71.0Mb
sub-directories of 1Mb or more:
data 70.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
dixon2012_IMR90_40 62.997 0.612 63.61
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.13-data-experiment/meat/HiCDataHumanIMR90.Rcheck/00check.log’
for details.
HiCDataHumanIMR90.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL HiCDataHumanIMR90 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘HiCDataHumanIMR90’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCDataHumanIMR90)
HiCDataHumanIMR90.Rcheck/HiCDataHumanIMR90-Ex.timings
| name | user | system | elapsed | |
| dixon2012_IMR90_40 | 62.997 | 0.612 | 63.610 | |