| Back to Build/check report for BioC 3.13 experimental data |
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This page was generated on 2021-10-16 15:58:40 -0400 (Sat, 16 Oct 2021).
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To the developers/maintainers of the ewceData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 118/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| ewceData 1.0.0 (landing page) Alan Murphy
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: ewceData |
| Version: 1.0.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings ewceData_1.0.0.tar.gz |
| StartedAt: 2021-10-16 13:09:21 -0400 (Sat, 16 Oct 2021) |
| EndedAt: 2021-10-16 13:11:44 -0400 (Sat, 16 Oct 2021) |
| EllapsedTime: 143.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ewceData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings ewceData_1.0.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/ewceData.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ewceData/DESCRIPTION’ ... OK
* this is package ‘ewceData’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ewceData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
all_hgnc 4.840 0.139 11.417
ctd 4.753 0.072 5.018
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ewceData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL ewceData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘ewceData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ewceData)
ewceData.Rcheck/ewceData-Ex.timings
| name | user | system | elapsed | |
| all_hgnc | 4.840 | 0.139 | 11.417 | |
| all_hgnc_wtEnsembl | 2.146 | 0.028 | 2.389 | |
| all_mgi | 2.186 | 0.016 | 2.401 | |
| all_mgi_wtEnsembl | 2.085 | 0.028 | 2.324 | |
| alzh_gwas_top100 | 0 | 0 | 0 | |
| cortex_mrna | 4.064 | 0.228 | 4.489 | |
| ctd | 4.753 | 0.072 | 5.018 | |
| ensembl_transcript_lengths_GCcontent | 2.668 | 0.068 | 2.934 | |
| ewceData-Package | 1.947 | 0.008 | 2.167 | |
| example_genelist | 1.963 | 0.016 | 2.432 | |
| hpsd_genes | 1.918 | 0.020 | 2.134 | |
| hypothalamus_mrna | 2.235 | 0.064 | 2.498 | |
| id_genes | 1.937 | 0.012 | 2.195 | |
| mgi_synonym_data | 2.384 | 0.028 | 2.597 | |
| mouse_to_human_homologs | 2.063 | 0.012 | 2.268 | |
| rbfox_genes | 2.107 | 0.020 | 2.312 | |
| schiz_genes | 2.066 | 0.008 | 2.281 | |
| tt_alzh | 2.417 | 0.196 | 2.824 | |
| tt_alzh_BA36 | 2.069 | 0.036 | 2.287 | |
| tt_alzh_BA44 | 2.199 | 0.020 | 2.413 | |