| Back to Build/check report for BioC 3.13 experimental data |
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This page was generated on 2021-10-16 15:58:41 -0400 (Sat, 16 Oct 2021).
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To the developers/maintainers of the mcsurvdata package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 222/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| mcsurvdata 1.10.0 (landing page) Adria Caballe Mestres
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: mcsurvdata |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:mcsurvdata.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings mcsurvdata_1.10.0.tar.gz |
| StartedAt: 2021-10-16 13:30:04 -0400 (Sat, 16 Oct 2021) |
| EndedAt: 2021-10-16 13:31:20 -0400 (Sat, 16 Oct 2021) |
| EllapsedTime: 76.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: mcsurvdata.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:mcsurvdata.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings mcsurvdata_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/mcsurvdata.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mcsurvdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mcsurvdata’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.git_fetch_output.txt
.git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mcsurvdata’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
mcsurvdata 16.454 0.571 18.741
nda.crc 8.638 0.117 9.508
nda.brca 8.047 0.140 8.804
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.13-data-experiment/meat/mcsurvdata.Rcheck/00check.log’
for details.
mcsurvdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL mcsurvdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘mcsurvdata’ ... ** using staged installation ** inst ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mcsurvdata)
mcsurvdata.Rcheck/mcsurvdata-Ex.timings
| name | user | system | elapsed | |
| mcsurvdata | 16.454 | 0.571 | 18.741 | |
| nda.brca | 8.047 | 0.140 | 8.804 | |
| nda.crc | 8.638 | 0.117 | 9.508 | |