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This page was generated on 2022-03-18 11:07:06 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for CausalR on riesling1


To the developers/maintainers of the CausalR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CausalR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 250/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CausalR 1.27.0  (landing page)
Glyn Bradley , Steven Barrett
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/CausalR
git_branch: master
git_last_commit: 33c9c80
git_last_commit_date: 2021-10-26 12:20:49 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CausalR
Version: 1.27.0
Command: rm -rf CausalR.buildbin-libdir && mkdir CausalR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=CausalR.buildbin-libdir CausalR_1.27.0.tar.gz
StartedAt: 2022-03-17 20:58:00 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 20:59:41 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 101.1 seconds
RetCode: 0
Status:   OK  
PackageFile: CausalR_1.27.0.zip
PackageFileSize: 739.2 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CausalR.buildbin-libdir && mkdir CausalR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=CausalR.buildbin-libdir CausalR_1.27.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'CausalR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CausalR'
    finding HTML links ... done
    AddIDsToVertices                        html  
    AddWeightsToEdges                       html  
    AnalyseExperimentalData                 html  
    AnalysePredictionsList                  html  
    CalculateEnrichmentPValue               html  
    CalculateSignificance                   html  
    CalculateSignificanceUsingCubicAlgorithm
                                            html  
    CalculateSignificanceUsingCubicAlgorithm1b
                                            html  
    CalculateSignificanceUsingQuarticAlgorithm
                                            html  
    CalculateTotalWeightForAllContingencyTables
                                            html  
    CalculateWeightGivenValuesInThreeByThreeContingencyTable
                                            html  
    CausalR-package                         html  
    CheckPossibleValuesAreValid             html  
    CheckRowAndColumnSumValuesAreValid      html  
    CompareHypothesis                       html  
    ComputeFinalDistribution                html  
    ComputePValueFromDistributionTable      html  
    CreateCCG                               html  
    CreateCG                                html  
    CreateNetworkFromTable                  html  
    DetermineInteractionTypeOfPath          html  
    FindApproximateValuesThatWillMaximiseDValue
                                            html  
    FindIdsOfConnectedNodesInSubgraph       html  
    FindMaximumDValue                       html  
    GetAllPossibleRoundingCombinations      html  
    GetApproximateMaximumDValueFromThreeByTwoContingencyTable
                                            html  
    GetApproximateMaximumDValueFromTwoByTwoContingencyTable
                                            html  
    GetCombinationsOfCorrectandIncorrectPredictions
                                            html  
    GetExplainedNodesOfCCG                  html  
    GetInteractionInformation               html  
    GetMatrixOfCausalRelationships          html  
    GetMaxDValueForAFamily                  html  
    GetMaxDValueForAThreeByTwoFamily        html  
    GetMaximumDValueFromTwoByTwoContingencyTable
                                            html  
    GetNodeID                               html  
    GetNodeName                             html  
    GetNumberOfPositiveAndNegativeEntries   html  
    GetPathsInSifFormat                     html  
    GetRegulatedNodes                       html  
    GetRowAndColumnSumValues                html  
    GetScoreForNumbersOfCorrectandIncorrectPredictions
                                            html  
    GetScoresForSingleNode                  html  
    GetScoresWeightsMatrix                  html  
    GetScoresWeightsMatrixByCubicAlg        html  
    GetSetOfDifferentiallyExpressedGenes    html  
    GetSetOfSignificantPredictions          html  
    GetShortestPathsFromCCG                 html  
    GetWeightForNumbersOfCorrectandIncorrectPredictions
                                            html  
    GetWeightsAboveHypothesisScoreAndTotalWeights
                                            html  
    GetWeightsAboveHypothesisScoreForAThreeByTwoTable
                                            html  
    GetWeightsFromInteractionInformation    html  
    MakePredictions                         html  
    MakePredictionsFromCCG                  html  
    MakePredictionsFromCG                   html  
    OrderHypotheses                         html  
    PlotGraphWithNodeNames                  html  
    PopulateTheThreeByThreeContingencyTable
                                            html  
    PopulateTwoByTwoContingencyTable        html  
    ProcessExperimentalData                 html  
    RankTheHypotheses                       html  
    ReadExperimentalData                    html  
    ReadSifFileToTable                      html  
    RemoveIDsNotInExperimentalData          html  
    ScoreHypothesis                         html  
    ValidateFormatOfDataTable               html  
    ValidateFormatOfTable                   html  
    WriteAllExplainedNodesToSifFile         html  
    WriteExplainedNodesToSifFile            html  
    runRankHypothesis                       html  
    runSCANR                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'CausalR' as CausalR_1.27.0.zip
* DONE (CausalR)