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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Harshlight
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'Harshlight' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c Harshlight.c -o Harshlight.o
Harshlight.c: In function 'extended_defects':
Harshlight.c:564:20: warning: variable 'p_num_points' set but not used [-Wunused-but-set-variable]
   int num_points, *p_num_points; //number of points inside the median kernel
                    ^~~~~~~~~~~~
Harshlight.c: In function 'image_dilation':
Harshlight.c:948:10: warning: variable 'cell_value' set but not used [-Wunused-but-set-variable]
   double cell_value;
          ^~~~~~~~~~
Harshlight.c: In function 'norm':
Harshlight.c:1316:27: warning: unused variable 'sorted2' [-Wunused-variable]
   double *sorted; double *sorted2;
                           ^~~~~~~
Harshlight.c: In function 'report_overall_header':
Harshlight.c:1471:26: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br);
                          ^
Harshlight.c:1471:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c:1474:26: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr);
                          ^
Harshlight.c:1474:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c: In function 'chip_summary':
Harshlight.c:1532:107: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
                                                                                                           ^
Harshlight.c:1532:107: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c:1542:26: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c);
                          ^
Harshlight.c:1542:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c:1543:26: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d);
                          ^
Harshlight.c:1543:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c: In function 'extended_stop':
Harshlight.c:1555:107: warning: unknown conversion type character ')' in format [-Wformat=]
   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
                                                                                                           ^
Harshlight.c:1555:107: warning: unknown conversion type character ')' in format [-Wformat=]
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o Harshlight.dll tmp.def Harshlight.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-Harshlight/00new/Harshlight/libs/x64
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Harshlight'
    finding HTML links ... done
    HarshComp                               html  
    HarshExt                                html  
    Harshlight                              html  
    sim                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Harshlight)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'SIMAT' is missing or broken
 done