Alan Murphy
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/MungeSumstats |
| git_branch: master |
| git_last_commit: 2d5aa86 |
| git_last_commit_date: 2022-03-17 10:18:43 -0400 (Thu, 17 Mar 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:08 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MungeSumstats package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MungeSumstats.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1258/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MungeSumstats 1.3.11 (landing page) Alan Murphy
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MungeSumstats |
| Version: 1.3.11 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MungeSumstats |
| StartedAt: 2022-03-17 16:10:21 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 16:11:30 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 68.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MungeSumstats
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'MungeSumstats' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MungeSumstats'
finding HTML links ... done
api_query html
axel html
check_access_token html
check_allele_flip html
check_allele_merge html
check_bi_allelic html
check_chr html
check_col_order html
check_dup_bp html
check_dup_col html
check_dup_row html
check_dup_snp html
check_effect_columns_nonzero html
check_empty_cols html
check_four_step_col html
check_frq html
check_frq_maf html
check_info_score html
check_ldsc_format html
check_miss_data html
check_multi_gwas html
check_multi_rs_snp html
check_n_int html
check_n_num html
check_no_allele html
check_no_chr_bp html
check_no_rs_snp html
check_no_snp html
check_on_ref_genome html
check_pos_se html
check_range_p_val html
check_row_snp html
check_save_path html
check_signed_col html
check_small_p_val html
check_strand_ambiguous html
check_tabular html
check_two_step_col html
check_vcf html
check_vital_col html
check_zscore html
column_dictionary html
compute_nsize html
compute_sample_size html
compute_sample_size_n html
compute_sample_size_neff html
convert_sumstats html
download_vcf html
downloader html
dt_to_granges html
find_sumstats html
format_sumstats html
formatted_example html
get_access_token html
get_chain_file html
get_genome_build html
get_genome_builds html
get_query_content html
get_unique_name_log_file html
get_vcf_sample_ids html
gwasinfo html
hg19ToHg38 html
hg38ToHg19 html
ieu-a-298 html
import_sumstats html
index_tabular html
infer_vcf_sample_ids html
legacy_ids html
liftover html
list_sumstats html
load_ref_genome_data html
load_snp_loc_data html
logs_example html
message_parallel html
messager html
parse_dropped_INFO html
parse_dropped_chrom html
parse_dropped_duplicates html
parse_dropped_nonA1A2 html
parse_dropped_nonBiallelic html
parse_dropped_nonRef html
parse_flipped html
parse_genome_build html
parse_idStandard html
parse_logs html
parse_pval_large html
parse_pval_neg html
parse_pval_small html
parse_report html
preview_sumstats html
raw_ALSvcf html
raw_eduAttainOkbay html
read_header html
read_sumstats html
read_vcf html
remove_nonstandard_vcf_cols html
report_summary html
select_api html
sort_coords html
standardise_sumstats_column_headers_crossplatform
html
sumstatsColHeaders html
supported_suffixes html
to_GRanges html
to_VRanges html
validate_parameters html
vcf2df html
write_sumstats html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MungeSumstats)
Making 'packages.html' ... done