Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:20:16 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the flowcatchR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowcatchR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 673/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
flowcatchR 1.30.0 (landing page) Federico Marini
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: flowcatchR |
Version: 1.30.0 |
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:flowcatchR.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings flowcatchR_1.30.0.tar.gz |
StartedAt: 2022-10-18 19:46:01 -0400 (Tue, 18 Oct 2022) |
EndedAt: 2022-10-18 19:47:03 -0400 (Tue, 18 Oct 2022) |
EllapsedTime: 62.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: flowcatchR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:flowcatchR.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings flowcatchR_1.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/flowcatchR.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘flowcatchR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘flowcatchR’ version ‘1.30.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘flowcatchR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to ‘EBImage’ which was already attached by Depends. Please remove these calls from your code. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.15-bioc/meat/flowcatchR.Rcheck/00check.log’ for details.
flowcatchR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL flowcatchR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘flowcatchR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flowcatchR)
flowcatchR.Rcheck/flowcatchR-Ex.timings
name | user | system | elapsed | |
Frames | 0.291 | 0.060 | 0.351 | |
add.contours | 0.001 | 0.000 | 0.001 | |
channel.Frames | 0.264 | 0.000 | 0.264 | |
crop.Frames | 0.089 | 0.023 | 0.113 | |
export.Frames | 0.001 | 0.000 | 0.001 | |
export.particles | 0.000 | 0.000 | 0.001 | |
inspect.Frames | 0.001 | 0.000 | 0.001 | |
kinematics | 0.327 | 0.008 | 0.335 | |
length.Frames | 0.060 | 0.023 | 0.084 | |
link.particles | 0.094 | 0.004 | 0.099 | |
matchTrajToParticles | 0.154 | 0.004 | 0.158 | |
normalizeFrames | 1.619 | 0.124 | 1.743 | |
particles | 0.000 | 0.001 | 0.001 | |
penaltyFunctionGenerator | 0.000 | 0.000 | 0.001 | |
plot.TrajectorySet | 0.152 | 0.002 | 0.154 | |
plot2D.TrajectorySet | 0.229 | 0.004 | 0.233 | |
preprocess.Frames | 0.539 | 0.080 | 0.619 | |
read.Frames | 0.001 | 0.000 | 0.001 | |
read.particles | 0 | 0 | 0 | |
rotate.Frames | 0.169 | 0.052 | 0.221 | |
select.Frames | 0.457 | 0.092 | 0.549 | |
select.particles | 0.019 | 0.000 | 0.018 | |
shinyFlow | 0.001 | 0.000 | 0.000 | |
show-Frames-method | 0.064 | 0.004 | 0.068 | |
show-KinematicsFeatures-method | 0.159 | 0.000 | 0.159 | |
show-KinematicsFeaturesSet-method | 0.172 | 0.000 | 0.171 | |
show-LinkedParticleSet-method | 0.118 | 0.008 | 0.126 | |
show-ParticleSet-method | 0.006 | 0.000 | 0.006 | |
show-TrajectorySet-method | 0.151 | 0.000 | 0.151 | |
snap | 0 | 0 | 0 | |
trajectories | 0.156 | 0.000 | 0.156 | |