Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:22:21 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the sSNAPPY package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sSNAPPY.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1928/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
sSNAPPY 1.0.2 (landing page) Wenjun Liu
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: sSNAPPY |
Version: 1.0.2 |
Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL sSNAPPY |
StartedAt: 2022-10-18 16:17:54 -0400 (Tue, 18 Oct 2022) |
EndedAt: 2022-10-18 16:19:06 -0400 (Tue, 18 Oct 2022) |
EllapsedTime: 72.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL sSNAPPY ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'sSNAPPY' ... ** using staged installation ** libs g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c code.cpp -o code.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c normaliseByPermutation.cpp -o normaliseByPermutation.o In file included from F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo:22, from F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:56, from F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from normaliseByPermutation.cpp:2: F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:333:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 333 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 338 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:341:61: note: '#pragma message: INFO: see the documentation for details' 341 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ssPertScore.cpp -o ssPertScore.o In file included from F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo:22, from F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:56, from F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from ssPertScore.cpp:2: F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:333:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 333 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 338 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:341:61: note: '#pragma message: INFO: see the documentation for details' 341 | #pragma message ("INFO: see the documentation for details") | ^ g++ -shared -s -static-libgcc -o sSNAPPY.dll tmp.def RcppExports.o code.o normaliseByPermutation.o ssPertScore.o -fopenmp -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-sSNAPPY/00new/sSNAPPY/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sSNAPPY)