Back to Multiple platform build/check report for BioC 3.18:   simplified   long
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-11-02 11:40:38 -0400 (Thu, 02 Nov 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4729
palomino4Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4463
lconwaymacOS 12.6.5 Montereyx86_644.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" 4478
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.1 (2023-06-16) -- "Beagle Scouts" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 621/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EBSeqHMM 1.36.0  (landing page)
Ning Leng
Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023)
git_url: https://git.bioconductor.org/packages/EBSeqHMM
git_branch: RELEASE_3_18
git_last_commit: 3bbf18b
git_last_commit_date: 2023-10-24 10:40:16 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.6.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for EBSeqHMM on kunpeng2


To the developers/maintainers of the EBSeqHMM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EBSeqHMM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: EBSeqHMM
Version: 1.36.0
Command: /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data EBSeqHMM
StartedAt: 2023-11-02 00:34:44 -0000 (Thu, 02 Nov 2023)
EndedAt: 2023-11-02 00:35:02 -0000 (Thu, 02 Nov 2023)
EllapsedTime: 18.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data EBSeqHMM
###
##############################################################################
##############################################################################


* checking for file ‘EBSeqHMM/DESCRIPTION’ ... OK
* preparing ‘EBSeqHMM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘EBSeqHMM_vignette.Rnw’ using Sweave
Loading required package: blockmodeling
To cite package 'blockmodeling' in publications please use package
citation and (at least) one of the articles:

  Žiberna, Aleš (2007). Generalized blockmodeling of valued networks.
  Social Networks 29(1), 105-126.

  Žiberna, Aleš (2008). Direct and indirect approaches to blockmodeling
  of valued networks in terms of regular equivalence. Journal of
  Mathematical Sociology 32(1), 57–84.

  Žiberna, Aleš (2014). Blockmodeling of multilevel networks. Social
  Networks 39, 46–61. https://doi.org/10.1016/j.socnet.2014.04.002.

  Žiberna, Aleš (2023).  Generalized and Classical Blockmodeling of
  Valued Networks, R package version 1.1.5.
  Cugmas, Marjan (2023).  Generalized and Classical Blockmodeling of
  Valued Networks, R package version 1.1.5.

To see these entries in BibTeX format, use 'format(<citation>,
bibtex=TRUE)', or 'toBibtex(.)'.
Loading required package: gplots

Attaching package: ‘gplots’

The following object is masked from ‘package:stats’:

    lowess

Loading required package: testthat

Attaching package: ‘EBSeqHMM’

The following objects are masked from ‘package:EBSeq’:

    beta.mom, f0

Warning in max(as.numeric(Iso)) :
  no non-missing arguments to max; returning -Inf

Error: processing vignette 'EBSeqHMM_vignette.Rnw' failed with diagnostics:
 chunk 28 
Error in 1:I : result would be too long a vector

--- failed re-building ‘EBSeqHMM_vignette.Rnw’

SUMMARY: processing the following file failed:
  ‘EBSeqHMM_vignette.Rnw’

Error: Vignette re-building failed.
Execution halted