| Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-11-02 11:40:40 -0400 (Thu, 02 Nov 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4729 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4463 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4478 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4464 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 698/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Tiago Lubiana
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
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To the developers/maintainers of the fcoex package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcoex.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: fcoex |
| Version: 1.16.0 |
| Command: /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data fcoex |
| StartedAt: 2023-11-02 01:03:50 -0000 (Thu, 02 Nov 2023) |
| EndedAt: 2023-11-02 01:06:37 -0000 (Thu, 02 Nov 2023) |
| EllapsedTime: 166.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data fcoex ### ############################################################################## ############################################################################## * checking for file ‘fcoex/DESCRIPTION’ ... OK * preparing ‘fcoex’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘fcoex.Rmd’ using rmarkdown Quitting from lines 91-92 [Finding cbf modules] (fcoex.Rmd) Error: processing vignette 'fcoex.Rmd' failed with diagnostics: cannot xtfrm data frames --- failed re-building ‘fcoex.Rmd’ --- re-building ‘fcoex_and_seurat.Rmd’ using rmarkdown Quitting from lines 29-42 [Running Seurat pipeline] (fcoex_and_seurat.Rmd) Error: processing vignette 'fcoex_and_seurat.Rmd' failed with diagnostics: cannot xtfrm data frames --- failed re-building ‘fcoex_and_seurat.Rmd’ SUMMARY: processing the following files failed: ‘fcoex.Rmd’ ‘fcoex_and_seurat.Rmd’ Error: Vignette re-building failed. Execution halted