Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-04-17 11:36:46 -0400 (Wed, 17 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4414 |
merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4437 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 706/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ffpe 1.46.0 (landing page) Levi Waldron
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the ffpe package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ffpe.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ffpe |
Version: 1.46.0 |
Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ffpe.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings ffpe_1.46.0.tar.gz |
StartedAt: 2024-04-16 00:46:51 -0400 (Tue, 16 Apr 2024) |
EndedAt: 2024-04-16 00:52:44 -0400 (Tue, 16 Apr 2024) |
EllapsedTime: 352.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ffpe.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ffpe.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings ffpe_1.46.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/ffpe.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'ffpe/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ffpe' version '1.46.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ffpe' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CATplot: no visible global function definition for 'abline' sampleQC,matrix : makeplots: no visible global function definition for 'cor' sampleQC,matrix : makeplots: no visible global function definition for 'median' sampleQC,matrix : makeplots: no visible binding for global variable 'median' sampleQC,matrix : makeplots: no visible global function definition for 'na.omit' sampleQC,matrix : makeplots: no visible global function definition for 'loess' sampleQC,matrix : makeplots: no visible global function definition for 'predict' sampleQC,matrix : makeplots: no visible global function definition for 'IQR' sampleQC,matrix : makeplots: no visible global function definition for 'abline' sampleQC,matrix : makeplots: no visible global function definition for 'legend' sampleQC,matrix : makeplots: no visible global function definition for 'lines' sampleQC,matrix: no visible binding for global variable 'IQR' sampleQC,matrix: no visible global function definition for 'na.omit' sortedIqrPlot,matrix: no visible binding for global variable 'quantile' sortedIqrPlot,matrix: no visible global function definition for 'segments' sortedIqrPlot,matrix: no visible binding for global variable 'IQR' Undefined global functions or variables: IQR abline cor legend lines loess median na.omit predict quantile segments Consider adding importFrom("graphics", "abline", "legend", "lines", "segments") importFrom("stats", "IQR", "cor", "loess", "median", "na.omit", "predict", "quantile") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'F:/biocbuild/bbs-3.18-bioc/meat/ffpe.Rcheck/00check.log' for details.
ffpe.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL ffpe ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library' * installing *source* package 'ffpe' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' ** testing if installed package can be loaded from final location No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' ** testing if installed package keeps a record of temporary installation path * DONE (ffpe)
ffpe.Rcheck/ffpe-Ex.timings
name | user | system | elapsed | |
CATplot | 4.52 | 0.10 | 4.64 | |
ffpe-package | 3.57 | 0.12 | 3.70 | |
sampleQC | 2.61 | 0.16 | 2.77 | |
sortedIqrPlot | 0.99 | 0.06 | 1.05 | |