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This page was generated on 2024-06-14 14:38 -0400 (Fri, 14 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4757
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4491
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 256/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BUScorrect 1.22.0  (landing page)
Xiangyu Luo
Snapshot Date: 2024-06-12 14:00 -0400 (Wed, 12 Jun 2024)
git_url: https://git.bioconductor.org/packages/BUScorrect
git_branch: RELEASE_3_19
git_last_commit: 1a8361d
git_last_commit_date: 2024-04-30 11:08:28 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

BUILD results for BUScorrect on palomino3

To the developers/maintainers of the BUScorrect package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BUScorrect.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BUScorrect
Version: 1.22.0
Command: chmod a+r BUScorrect -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BUScorrect
StartedAt: 2024-06-12 17:47:24 -0400 (Wed, 12 Jun 2024)
EndedAt: 2024-06-12 17:49:49 -0400 (Wed, 12 Jun 2024)
EllapsedTime: 145.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r BUScorrect -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BUScorrect
###
##############################################################################
##############################################################################


* checking for file 'BUScorrect/DESCRIPTION' ... OK
* preparing 'BUScorrect':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building 'BUScorrect_user_guide.Rnw' using knitr
!!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: User/administrator updates are out-of-sync.
!!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: User/administrator updates are out-of-sync.
!!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: User/administrator updates are out-of-sync.
texify: major issue: User/administrator updates are out-of-sync.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "BUScorrect_user_guide.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'BUScorrect_user_guide.Rnw' failed with diagnostics:
running 'texi2dvi' on 'BUScorrect_user_guide.tex' failed

LaTeX errors:
ettes/BUScorrect_user_guide.tex:81: Package xcolor Error: Undefined color `fgco
lor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/BUScorrect_user_guide.tex:145: Package xcolor Error: Undefined color `fgc
olor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/BUScorrect_user_guide.tex:260: Package xcolor Error: Undefined color `fgc
olor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/BUScorrect_user_guide.tex:289: Package xcolor Error: Undefined color `fgc
olor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/BUScorrect_user_guide.tex:319: Package xcolor Error: Undefined color `fgc
olor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/BUScorrect_user_guide.tex:342: Package xcolor Error: Undefined color `fgc
olor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/BUScorrect_user_guide.tex:389: Package xcolor Error: Undefined color `fgc
olor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/BUScorrect_user_guide.tex:404: Package xcolor Error: Undefined color `fgc
olor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/BUScorrect_user_guide.tex:438: Package xcolor Error: Undefined color `fgc
olor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/BUScorrect_user_guide.tex:458: Package xcolor Error: Undefined color `fgc
olor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/BUScorrect_user_guide.tex:477: Package xcolor Error: Undefined color `fgc
olor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/BUScorrect_user_guide.tex:494: Package xcolor Error: Undefined color `fgc
olor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/BUScorrect_user_guide.tex:519: Package xcolor Error: Undefined color `fgc
olor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/BUScorrect_user_guide.tex:532: Package xcolor Error: Undefined color `fgc
olor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.

--- failed re-building 'BUScorrect_user_guide.Rnw'

SUMMARY: processing the following file failed:
  'BUScorrect_user_guide.Rnw'

Error: Vignette re-building failed.
Execution halted