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This page was generated on 2024-03-04 11:39:02 -0500 (Mon, 04 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4676
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4414
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4441
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" 4417
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 441/2251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CoSIA 1.3.1  (landing page)
Amanda D. Clark
Snapshot Date: 2024-03-01 14:00:22 -0500 (Fri, 01 Mar 2024)
git_url: https://git.bioconductor.org/packages/CoSIA
git_branch: devel
git_last_commit: ea4c2c2
git_last_commit_date: 2024-02-29 12:41:44 -0500 (Thu, 29 Feb 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    TIMEOUT  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for CoSIA on merida1


To the developers/maintainers of the CoSIA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoSIA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CoSIA
Version: 1.3.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CoSIA
StartedAt: 2024-03-01 18:10:03 -0500 (Fri, 01 Mar 2024)
EndedAt: 2024-03-01 18:36:04 -0500 (Fri, 01 Mar 2024)
EllapsedTime: 1561.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CoSIA
###
##############################################################################
##############################################################################


* checking for file ‘CoSIA/DESCRIPTION’ ... OK
* preparing ‘CoSIA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CoSIA_Intro.Rmd’ using rmarkdown
trying URL 'https://bioconductor.org/packages/3.19/data/experiment/src/contrib/CoSIAdata_1.3.0.tar.gz'
Content type 'application/x-gzip' length 304040 bytes (296 KB)
==================================================
downloaded 296 KB

* installing *source* package ‘CoSIAdata’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CoSIAdata)

The downloaded source packages are in
	'/private/tmp/RtmpSGqtMq/downloaded_packages'

Quitting from lines 104-105 [getTissues_2] (CoSIA_Intro.Rmd)
Error: processing vignette 'CoSIA_Intro.Rmd' failed with diagnostics:
invalid list argument: all variables should have the same length
--- failed re-building ‘CoSIA_Intro.Rmd’

SUMMARY: processing the following file failed:
  ‘CoSIA_Intro.Rmd’

Error: Vignette re-building failed.
Execution halted