| Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-06-14 14:38 -0400 (Fri, 14 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4757 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4491 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 826/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GenomeInfoDb 1.40.1 (landing page) Hervé Pagès
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the GenomeInfoDb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenomeInfoDb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GenomeInfoDb |
| Version: 1.40.1 |
| Command: chmod a+r GenomeInfoDb -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GenomeInfoDb |
| StartedAt: 2024-06-12 19:30:04 -0400 (Wed, 12 Jun 2024) |
| EndedAt: 2024-06-12 19:31:06 -0400 (Wed, 12 Jun 2024) |
| EllapsedTime: 62.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r GenomeInfoDb -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GenomeInfoDb ### ############################################################################## ############################################################################## * checking for file 'GenomeInfoDb/DESCRIPTION' ... OK * preparing 'GenomeInfoDb': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'Accept-organism-for-GenomeInfoDb.Rmd' using rmarkdown --- finished re-building 'Accept-organism-for-GenomeInfoDb.Rmd' --- re-building 'GenomeInfoDb.Rnw' using knitr texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "GenomeInfoDb.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'GenomeInfoDb.Rnw' failed with diagnostics: running 'texi2dvi' on 'GenomeInfoDb.tex' failed LaTeX errors: ettes/GenomeInfoDb.tex:64: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:96: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:120: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:141: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:156: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:173: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:189: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:216: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:251: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:267: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:290: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:308: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:324: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:358: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:405: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:433: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:462: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:489: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:515: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:709: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ettes/GenomeInfoDb.tex:765: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... --- failed re-building 'GenomeInfoDb.Rnw' SUMMARY: processing the following file failed: 'GenomeInfoDb.Rnw' Error: Vignette re-building failed. Execution halted