Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-06-04 11:36:31 -0400 (Tue, 04 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4753 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4487 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4518 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 987/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.10.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.10.0.tar.gz |
StartedAt: 2024-06-03 04:21:40 -0400 (Mon, 03 Jun 2024) |
EndedAt: 2024-06-03 04:26:36 -0400 (Mon, 03 Jun 2024) |
EllapsedTime: 296.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 35.009 2.326 37.753 corr_plot 33.133 2.112 35.462 FSmethod 33.024 2.012 35.229 pred_ensembel 13.657 0.489 10.113 enrichfindP 0.533 0.070 9.530 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 94.347906 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 96.178403 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 106.000367 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 106.026257 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 98.916168 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 98.864565 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 103.876273 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 96.839830 final value 94.052911 converged Fitting Repeat 4 # weights: 305 initial value 101.254739 final value 94.042012 converged Fitting Repeat 5 # weights: 305 initial value 95.398891 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 101.190425 iter 10 value 92.531739 iter 20 value 89.558388 iter 30 value 89.214308 iter 40 value 88.522731 iter 50 value 88.449152 final value 88.449090 converged Fitting Repeat 2 # weights: 507 initial value 127.107618 final value 94.032967 converged Fitting Repeat 3 # weights: 507 initial value 106.642100 iter 10 value 91.933601 iter 20 value 87.174176 iter 30 value 87.074055 iter 40 value 87.073748 final value 87.073738 converged Fitting Repeat 4 # weights: 507 initial value 97.999052 iter 10 value 91.405895 iter 20 value 90.553448 iter 30 value 90.208638 iter 40 value 90.170229 iter 50 value 90.158375 iter 60 value 90.157145 final value 90.157143 converged Fitting Repeat 5 # weights: 507 initial value 103.913744 final value 94.032967 converged Fitting Repeat 1 # weights: 103 initial value 95.675492 iter 10 value 94.069493 iter 20 value 94.056192 iter 30 value 93.941645 iter 40 value 93.572222 iter 50 value 91.765791 iter 60 value 87.605802 iter 70 value 84.897902 iter 80 value 83.390891 iter 90 value 83.185347 iter 100 value 83.021064 final value 83.021064 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 95.813021 iter 10 value 93.477533 iter 20 value 89.163811 iter 30 value 84.672743 iter 40 value 83.954945 iter 50 value 83.417552 iter 60 value 83.097304 iter 70 value 82.967081 iter 80 value 82.710276 iter 90 value 82.641300 final value 82.641297 converged Fitting Repeat 3 # weights: 103 initial value 105.824188 iter 10 value 94.055727 iter 20 value 93.884718 iter 30 value 93.670238 iter 40 value 93.556004 iter 50 value 93.553831 iter 60 value 93.552662 iter 70 value 87.557544 iter 80 value 86.917115 iter 90 value 86.473665 iter 100 value 86.184375 final value 86.184375 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 98.320063 iter 10 value 94.067466 iter 20 value 94.008367 iter 30 value 93.750145 iter 40 value 93.613021 iter 50 value 87.633683 iter 60 value 84.284220 iter 70 value 83.535783 iter 80 value 82.800302 iter 90 value 82.658227 final value 82.641297 converged Fitting Repeat 5 # weights: 103 initial value 97.233602 iter 10 value 94.047590 iter 20 value 87.790445 iter 30 value 85.352625 iter 40 value 83.886246 iter 50 value 83.473017 iter 60 value 83.457522 final value 83.457519 converged Fitting Repeat 1 # weights: 305 initial value 122.770313 iter 10 value 94.115034 iter 20 value 92.683865 iter 30 value 86.274728 iter 40 value 84.414037 iter 50 value 82.520013 iter 60 value 82.088605 iter 70 value 81.889636 iter 80 value 81.703051 iter 90 value 81.521004 iter 100 value 81.368748 final value 81.368748 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 116.201126 iter 10 value 93.554414 iter 20 value 89.923954 iter 30 value 85.118633 iter 40 value 83.819349 iter 50 value 83.453845 iter 60 value 83.363854 iter 70 value 83.203384 iter 80 value 83.143903 iter 90 value 82.848403 iter 100 value 82.388416 final value 82.388416 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.466888 iter 10 value 94.183262 iter 20 value 90.878029 iter 30 value 84.162885 iter 40 value 83.288003 iter 50 value 83.067252 iter 60 value 82.395237 iter 70 value 82.215573 iter 80 value 82.074859 iter 90 value 81.936330 iter 100 value 81.931199 final value 81.931199 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.945080 iter 10 value 93.830324 iter 20 value 86.574989 iter 30 value 86.395588 iter 40 value 84.610208 iter 50 value 84.121950 iter 60 value 84.007980 iter 70 value 83.638412 iter 80 value 83.606148 iter 90 value 83.594488 iter 100 value 83.471108 final value 83.471108 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 98.989719 iter 10 value 94.057563 iter 20 value 92.734432 iter 30 value 89.061062 iter 40 value 88.525052 iter 50 value 88.335679 iter 60 value 85.589095 iter 70 value 85.168502 iter 80 value 83.400370 iter 90 value 82.359783 iter 100 value 82.151369 final value 82.151369 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 109.300996 iter 10 value 94.627541 iter 20 value 93.403018 iter 30 value 88.591358 iter 40 value 84.221897 iter 50 value 83.826298 iter 60 value 83.540030 iter 70 value 83.187691 iter 80 value 82.298458 iter 90 value 81.691265 iter 100 value 81.501762 final value 81.501762 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 110.323602 iter 10 value 93.822910 iter 20 value 87.590468 iter 30 value 85.440109 iter 40 value 83.640478 iter 50 value 82.651059 iter 60 value 82.250173 iter 70 value 81.906750 iter 80 value 81.504091 iter 90 value 81.356976 iter 100 value 81.242138 final value 81.242138 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 110.381141 iter 10 value 94.115124 iter 20 value 94.057176 iter 30 value 93.709276 iter 40 value 92.126678 iter 50 value 88.115205 iter 60 value 84.428886 iter 70 value 84.082740 iter 80 value 83.515972 iter 90 value 83.202560 iter 100 value 82.647704 final value 82.647704 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 114.894129 iter 10 value 93.568154 iter 20 value 90.205106 iter 30 value 87.274181 iter 40 value 84.695271 iter 50 value 83.333578 iter 60 value 82.324066 iter 70 value 82.232710 iter 80 value 82.059697 iter 90 value 81.946816 iter 100 value 81.844806 final value 81.844806 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 111.150822 iter 10 value 93.971868 iter 20 value 89.761686 iter 30 value 89.341623 iter 40 value 88.420413 iter 50 value 86.454412 iter 60 value 84.711838 iter 70 value 83.365070 iter 80 value 83.254614 iter 90 value 83.036384 iter 100 value 82.819847 final value 82.819847 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 105.235805 iter 10 value 94.054773 iter 20 value 93.796502 iter 30 value 89.668830 iter 40 value 89.318888 iter 50 value 89.036615 iter 60 value 88.878115 iter 70 value 88.693964 final value 88.693739 converged Fitting Repeat 2 # weights: 103 initial value 99.126874 final value 94.056073 converged Fitting Repeat 3 # weights: 103 initial value 96.663243 final value 94.054659 converged Fitting Repeat 4 # weights: 103 initial value 98.088519 final value 94.054362 converged Fitting Repeat 5 # weights: 103 initial value 95.416130 final value 94.054431 converged Fitting Repeat 1 # weights: 305 initial value 97.442978 iter 10 value 93.444450 iter 20 value 93.300479 iter 30 value 93.298425 iter 40 value 93.297498 final value 93.295862 converged Fitting Repeat 2 # weights: 305 initial value 95.107857 iter 10 value 94.037714 iter 20 value 93.852843 iter 30 value 93.600616 iter 40 value 93.513396 iter 50 value 93.473190 iter 60 value 87.761230 final value 86.166662 converged Fitting Repeat 3 # weights: 305 initial value 101.556125 iter 10 value 94.058060 iter 20 value 94.052951 iter 30 value 86.348136 iter 40 value 85.114295 iter 50 value 84.479387 iter 60 value 83.060162 iter 70 value 82.691697 iter 80 value 82.642984 iter 80 value 82.642984 final value 82.642984 converged Fitting Repeat 4 # weights: 305 initial value 106.319774 iter 10 value 94.057607 iter 20 value 94.025098 iter 30 value 93.526931 iter 40 value 92.588132 iter 50 value 88.406685 iter 60 value 87.503323 iter 70 value 86.679786 iter 80 value 86.422637 iter 90 value 86.301430 iter 100 value 85.221323 final value 85.221323 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 94.204131 iter 10 value 94.056499 iter 20 value 92.423189 iter 30 value 86.369961 final value 86.005286 converged Fitting Repeat 1 # weights: 507 initial value 105.518902 iter 10 value 94.041444 iter 20 value 94.033175 iter 30 value 92.002747 iter 40 value 84.267049 iter 50 value 82.101492 iter 60 value 81.735677 iter 70 value 81.633952 final value 81.633437 converged Fitting Repeat 2 # weights: 507 initial value 102.128835 iter 10 value 94.055166 iter 20 value 94.040953 iter 30 value 94.035231 iter 40 value 94.032998 iter 50 value 84.279605 iter 60 value 84.124288 iter 70 value 83.945032 iter 80 value 83.009506 iter 90 value 82.653340 iter 100 value 82.396807 final value 82.396807 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 112.793969 iter 10 value 93.181101 iter 20 value 91.997181 iter 30 value 91.994782 iter 40 value 91.897366 iter 50 value 91.893886 iter 60 value 91.872564 iter 70 value 91.848998 final value 91.848958 converged Fitting Repeat 4 # weights: 507 initial value 94.730448 iter 10 value 93.440806 iter 20 value 93.308618 iter 30 value 93.242187 iter 40 value 93.082041 iter 50 value 93.055580 iter 60 value 93.055232 iter 70 value 93.054749 iter 80 value 91.942941 iter 90 value 89.739124 iter 100 value 86.073049 final value 86.073049 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 94.361577 iter 10 value 93.540031 iter 20 value 93.433880 iter 30 value 93.259250 iter 40 value 92.465388 iter 50 value 92.150881 iter 60 value 92.149714 iter 70 value 92.059288 final value 92.053947 converged Fitting Repeat 1 # weights: 103 initial value 101.710069 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 113.960661 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 102.235730 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 111.124961 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 96.744596 final value 94.325949 converged Fitting Repeat 1 # weights: 305 initial value 115.620216 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 116.978116 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 103.446463 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 94.668465 iter 10 value 93.394962 final value 93.394928 converged Fitting Repeat 5 # weights: 305 initial value 111.773766 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 104.695445 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 100.159212 iter 10 value 92.079295 iter 20 value 86.127735 iter 30 value 85.757037 iter 40 value 84.589331 final value 84.588745 converged Fitting Repeat 3 # weights: 507 initial value 98.623976 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 113.815792 iter 10 value 93.394936 final value 93.394928 converged Fitting Repeat 5 # weights: 507 initial value 102.764305 iter 10 value 90.809519 iter 20 value 86.221188 final value 86.061212 converged Fitting Repeat 1 # weights: 103 initial value 104.811205 iter 10 value 94.476789 iter 20 value 81.824187 iter 30 value 81.647426 iter 40 value 81.399276 iter 50 value 80.204514 iter 60 value 79.577659 iter 70 value 79.563106 iter 70 value 79.563106 iter 70 value 79.563106 final value 79.563106 converged Fitting Repeat 2 # weights: 103 initial value 109.773198 iter 10 value 94.474101 iter 20 value 93.679195 iter 30 value 93.677673 iter 40 value 92.920047 iter 50 value 87.389638 iter 60 value 85.950621 iter 70 value 85.109004 iter 80 value 84.425633 iter 90 value 84.111192 final value 84.107092 converged Fitting Repeat 3 # weights: 103 initial value 98.787071 iter 10 value 88.348886 iter 20 value 86.214602 iter 30 value 86.088704 iter 40 value 85.494719 iter 50 value 84.694577 iter 60 value 84.108852 final value 84.107092 converged Fitting Repeat 4 # weights: 103 initial value 104.453179 iter 10 value 93.332324 iter 20 value 92.753261 iter 30 value 87.220800 iter 40 value 86.109317 iter 50 value 82.155359 iter 60 value 81.111737 iter 70 value 80.666290 iter 80 value 79.644206 iter 90 value 79.486104 iter 100 value 79.481855 final value 79.481855 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 101.049575 iter 10 value 92.542577 iter 20 value 90.455358 iter 30 value 90.425854 iter 40 value 85.434182 iter 50 value 82.805494 iter 60 value 81.861438 iter 70 value 80.102363 iter 80 value 79.565486 iter 90 value 79.563243 final value 79.563107 converged Fitting Repeat 1 # weights: 305 initial value 122.960396 iter 10 value 94.779242 iter 20 value 94.356002 iter 30 value 93.125035 iter 40 value 89.355925 iter 50 value 84.617071 iter 60 value 82.489125 iter 70 value 78.805987 iter 80 value 77.698001 iter 90 value 76.727300 iter 100 value 76.302199 final value 76.302199 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.437033 iter 10 value 90.498893 iter 20 value 84.863303 iter 30 value 81.107662 iter 40 value 77.776070 iter 50 value 77.444003 iter 60 value 76.949113 iter 70 value 76.788202 iter 80 value 76.774315 iter 90 value 76.768417 iter 100 value 76.767572 final value 76.767572 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 107.429726 iter 10 value 91.796477 iter 20 value 89.406681 iter 30 value 89.016646 iter 40 value 87.822140 iter 50 value 80.607855 iter 60 value 79.757041 iter 70 value 78.902158 iter 80 value 78.235266 iter 90 value 76.729631 iter 100 value 76.452174 final value 76.452174 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 118.103889 iter 10 value 93.579610 iter 20 value 91.443495 iter 30 value 82.500895 iter 40 value 80.842045 iter 50 value 80.118853 iter 60 value 78.985371 iter 70 value 77.601040 iter 80 value 77.225812 iter 90 value 76.960113 iter 100 value 76.920695 final value 76.920695 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 111.128828 iter 10 value 94.819789 iter 20 value 86.417645 iter 30 value 78.566619 iter 40 value 76.795846 iter 50 value 76.596044 iter 60 value 76.557665 iter 70 value 76.538225 iter 80 value 76.497274 iter 90 value 76.361033 iter 100 value 76.190934 final value 76.190934 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 112.085282 iter 10 value 91.839766 iter 20 value 89.261684 iter 30 value 86.608372 iter 40 value 81.463569 iter 50 value 79.549278 iter 60 value 79.159151 iter 70 value 78.577600 iter 80 value 77.871421 iter 90 value 77.661368 iter 100 value 76.797711 final value 76.797711 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 112.492219 iter 10 value 94.466414 iter 20 value 83.342609 iter 30 value 81.975365 iter 40 value 78.954366 iter 50 value 78.544888 iter 60 value 77.890225 iter 70 value 77.590938 iter 80 value 77.135499 iter 90 value 76.698559 iter 100 value 76.459377 final value 76.459377 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 123.470599 iter 10 value 93.887344 iter 20 value 92.511706 iter 30 value 82.347530 iter 40 value 81.462800 iter 50 value 80.032215 iter 60 value 78.213064 iter 70 value 77.824447 iter 80 value 76.759280 iter 90 value 76.524006 iter 100 value 76.398813 final value 76.398813 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 124.807616 iter 10 value 103.342879 iter 20 value 102.090553 iter 30 value 91.808420 iter 40 value 89.075649 iter 50 value 82.678535 iter 60 value 80.811482 iter 70 value 80.430170 iter 80 value 78.922828 iter 90 value 78.262051 iter 100 value 78.108934 final value 78.108934 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 147.888024 iter 10 value 95.433527 iter 20 value 93.740685 iter 30 value 89.858442 iter 40 value 80.211397 iter 50 value 78.404735 iter 60 value 77.521055 iter 70 value 77.347832 iter 80 value 77.145392 iter 90 value 77.061376 iter 100 value 77.045574 final value 77.045574 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.163914 iter 10 value 94.485341 final value 94.484413 converged Fitting Repeat 2 # weights: 103 initial value 103.575319 final value 94.485828 converged Fitting Repeat 3 # weights: 103 initial value 95.050519 final value 94.485774 converged Fitting Repeat 4 # weights: 103 initial value 101.824365 final value 94.485928 converged Fitting Repeat 5 # weights: 103 initial value 103.274218 final value 94.485830 converged Fitting Repeat 1 # weights: 305 initial value 96.977450 iter 10 value 94.488733 iter 20 value 94.187365 final value 93.395731 converged Fitting Repeat 2 # weights: 305 initial value 101.837649 iter 10 value 94.489334 iter 20 value 94.475725 iter 30 value 93.396594 iter 40 value 93.389520 iter 50 value 91.310613 iter 60 value 91.215082 iter 70 value 91.213776 iter 80 value 91.213281 iter 90 value 90.985381 iter 100 value 88.871671 final value 88.871671 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 118.089916 iter 10 value 89.913231 iter 20 value 88.789312 iter 30 value 88.613735 iter 40 value 88.607363 iter 50 value 88.599255 iter 60 value 88.433673 iter 70 value 88.433357 iter 80 value 88.389101 iter 90 value 87.995883 iter 100 value 87.994045 final value 87.994045 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 106.112701 iter 10 value 91.374712 iter 20 value 87.562583 iter 30 value 87.553974 iter 40 value 87.155291 final value 87.152517 converged Fitting Repeat 5 # weights: 305 initial value 97.169372 iter 10 value 89.641458 iter 20 value 89.635957 iter 30 value 89.632141 iter 40 value 80.084270 iter 50 value 79.308545 iter 60 value 77.014797 iter 70 value 75.651374 iter 80 value 75.143968 iter 90 value 74.694766 iter 100 value 74.651990 final value 74.651990 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 126.741036 iter 10 value 94.492611 iter 20 value 94.437912 iter 30 value 93.395508 iter 30 value 93.395508 iter 30 value 93.395508 final value 93.395508 converged Fitting Repeat 2 # weights: 507 initial value 105.729287 iter 10 value 93.405004 iter 20 value 93.403589 iter 30 value 93.395101 iter 40 value 90.789189 iter 50 value 83.238697 iter 60 value 83.187857 iter 70 value 78.426821 iter 80 value 77.522887 iter 90 value 77.130531 iter 100 value 77.094994 final value 77.094994 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 111.429328 iter 10 value 94.362571 iter 20 value 94.049152 iter 30 value 93.340057 iter 40 value 91.281930 iter 50 value 87.107686 iter 60 value 87.104506 iter 70 value 86.948465 iter 80 value 86.829080 iter 90 value 86.828895 iter 100 value 86.828699 final value 86.828699 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 99.311313 iter 10 value 94.492120 iter 20 value 93.805924 final value 93.023048 converged Fitting Repeat 5 # weights: 507 initial value 115.746475 iter 10 value 94.492519 iter 20 value 94.368411 iter 30 value 90.710161 iter 40 value 81.386325 iter 50 value 80.985156 iter 60 value 79.688491 iter 70 value 79.660232 iter 80 value 78.900261 iter 90 value 78.483806 iter 100 value 78.474654 final value 78.474654 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 102.173915 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 98.901777 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.268754 iter 10 value 91.696522 iter 20 value 91.371380 iter 30 value 91.323311 final value 91.323278 converged Fitting Repeat 4 # weights: 103 initial value 102.509251 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 100.098236 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 105.330335 iter 10 value 85.504000 iter 20 value 83.406771 final value 83.406763 converged Fitting Repeat 2 # weights: 305 initial value 102.366252 final value 94.326054 converged Fitting Repeat 3 # weights: 305 initial value 96.470130 final value 93.567525 converged Fitting Repeat 4 # weights: 305 initial value 109.454961 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 108.956190 iter 10 value 92.935178 final value 92.934880 converged Fitting Repeat 1 # weights: 507 initial value 103.221899 iter 10 value 93.551031 iter 20 value 93.322282 iter 30 value 93.245693 final value 93.245666 converged Fitting Repeat 2 # weights: 507 initial value 104.247510 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 100.580123 iter 10 value 93.331960 final value 93.286554 converged Fitting Repeat 4 # weights: 507 initial value 99.398358 iter 10 value 93.726272 iter 20 value 93.473012 final value 93.472847 converged Fitting Repeat 5 # weights: 507 initial value 95.670965 final value 94.291892 converged Fitting Repeat 1 # weights: 103 initial value 96.602476 iter 10 value 94.445074 iter 20 value 89.133112 iter 30 value 85.501992 iter 40 value 84.232809 iter 50 value 84.006986 iter 60 value 83.782965 iter 70 value 83.483931 iter 80 value 83.384452 iter 90 value 83.315138 final value 83.315067 converged Fitting Repeat 2 # weights: 103 initial value 98.938055 iter 10 value 92.906210 iter 20 value 84.297172 iter 30 value 83.750022 iter 40 value 83.534265 iter 50 value 82.973477 iter 60 value 82.775569 iter 70 value 82.712874 final value 82.712427 converged Fitting Repeat 3 # weights: 103 initial value 101.099776 iter 10 value 94.486475 iter 20 value 93.165676 iter 30 value 93.014386 iter 40 value 92.943397 iter 50 value 92.941502 iter 60 value 92.699093 iter 70 value 92.651444 iter 80 value 86.345224 iter 90 value 83.874356 iter 100 value 83.287005 final value 83.287005 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 99.320763 iter 10 value 94.430409 iter 20 value 93.498288 iter 30 value 91.484273 iter 40 value 84.723551 iter 50 value 83.731994 iter 60 value 83.259626 iter 70 value 82.731237 iter 80 value 82.715165 iter 90 value 82.713308 iter 100 value 82.712463 final value 82.712463 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 101.515736 iter 10 value 94.490794 iter 20 value 87.471218 iter 30 value 85.100089 iter 40 value 84.630664 iter 50 value 83.910904 iter 60 value 83.105900 iter 70 value 82.520093 final value 82.519833 converged Fitting Repeat 1 # weights: 305 initial value 134.153719 iter 10 value 94.483011 iter 20 value 93.087022 iter 30 value 85.117447 iter 40 value 83.745094 iter 50 value 82.240693 iter 60 value 81.290535 iter 70 value 80.153007 iter 80 value 79.807077 iter 90 value 79.280015 iter 100 value 79.066107 final value 79.066107 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 102.535804 iter 10 value 94.476632 iter 20 value 90.324214 iter 30 value 87.385596 iter 40 value 87.096695 iter 50 value 86.172750 iter 60 value 85.877522 iter 70 value 83.272042 iter 80 value 83.043367 iter 90 value 82.589456 iter 100 value 81.061922 final value 81.061922 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 121.956284 iter 10 value 94.527299 iter 20 value 94.326713 iter 30 value 86.571614 iter 40 value 84.573780 iter 50 value 83.574825 iter 60 value 83.454605 iter 70 value 81.682784 iter 80 value 80.820733 iter 90 value 80.397389 iter 100 value 80.005629 final value 80.005629 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 118.716854 iter 10 value 94.858904 iter 20 value 90.145939 iter 30 value 89.772718 iter 40 value 89.418103 iter 50 value 84.350841 iter 60 value 83.505874 iter 70 value 80.739666 iter 80 value 79.896911 iter 90 value 79.739027 iter 100 value 79.388971 final value 79.388971 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 125.692158 iter 10 value 94.436366 iter 20 value 91.878205 iter 30 value 89.379613 iter 40 value 87.231113 iter 50 value 82.766617 iter 60 value 81.978986 iter 70 value 81.031376 iter 80 value 80.633276 iter 90 value 80.182447 iter 100 value 80.027497 final value 80.027497 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 108.957392 iter 10 value 94.542823 iter 20 value 94.056447 iter 30 value 84.973850 iter 40 value 83.711646 iter 50 value 83.434849 iter 60 value 81.213360 iter 70 value 80.370194 iter 80 value 79.981657 iter 90 value 79.636501 iter 100 value 79.082174 final value 79.082174 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 131.690945 iter 10 value 101.949900 iter 20 value 87.167629 iter 30 value 85.415424 iter 40 value 83.499140 iter 50 value 83.148769 iter 60 value 81.231147 iter 70 value 80.117485 iter 80 value 79.645034 iter 90 value 79.279267 iter 100 value 78.876656 final value 78.876656 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 113.457472 iter 10 value 96.511618 iter 20 value 92.534876 iter 30 value 85.421436 iter 40 value 84.433018 iter 50 value 83.160458 iter 60 value 81.565545 iter 70 value 80.165884 iter 80 value 79.633801 iter 90 value 79.101920 iter 100 value 79.016947 final value 79.016947 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 114.340397 iter 10 value 96.171061 iter 20 value 88.060978 iter 30 value 83.723578 iter 40 value 83.237826 iter 50 value 82.267872 iter 60 value 81.330066 iter 70 value 80.683788 iter 80 value 79.636291 iter 90 value 79.237018 iter 100 value 78.936637 final value 78.936637 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 104.331708 iter 10 value 94.385498 iter 20 value 91.577954 iter 30 value 86.922876 iter 40 value 85.277388 iter 50 value 81.735441 iter 60 value 80.837046 iter 70 value 80.108824 iter 80 value 79.505260 iter 90 value 79.289900 iter 100 value 79.095684 final value 79.095684 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.264637 final value 94.485945 converged Fitting Repeat 2 # weights: 103 initial value 95.972276 final value 94.431813 converged Fitting Repeat 3 # weights: 103 initial value 99.018641 final value 94.485781 converged Fitting Repeat 4 # weights: 103 initial value 119.257481 final value 94.485975 converged Fitting Repeat 5 # weights: 103 initial value 96.733745 iter 10 value 94.486108 iter 20 value 94.484216 iter 20 value 94.484216 final value 94.484216 converged Fitting Repeat 1 # weights: 305 initial value 96.137986 iter 10 value 94.460168 iter 20 value 94.299243 iter 30 value 94.292009 iter 30 value 94.292009 final value 94.292009 converged Fitting Repeat 2 # weights: 305 initial value 96.424373 iter 10 value 94.488501 iter 20 value 94.160268 iter 30 value 86.138641 iter 40 value 86.088038 iter 50 value 86.044258 iter 60 value 86.026573 iter 70 value 86.017161 iter 80 value 85.937864 iter 90 value 85.927854 iter 100 value 85.836397 final value 85.836397 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.199718 iter 10 value 94.296549 iter 20 value 94.292295 iter 30 value 92.705580 iter 40 value 85.212185 final value 84.632053 converged Fitting Repeat 4 # weights: 305 initial value 96.338967 iter 10 value 86.617247 iter 20 value 83.840675 iter 30 value 82.261464 iter 40 value 82.156062 iter 50 value 82.056584 iter 60 value 82.056065 iter 70 value 81.959673 iter 80 value 81.061522 iter 90 value 78.636200 iter 100 value 78.029428 final value 78.029428 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 111.350249 iter 10 value 94.487829 iter 20 value 94.117562 iter 30 value 84.661496 iter 40 value 84.192892 iter 50 value 84.063719 iter 60 value 84.058726 iter 70 value 83.660567 iter 80 value 82.617356 iter 90 value 82.614680 iter 100 value 82.459754 final value 82.459754 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 99.499691 iter 10 value 94.492377 iter 20 value 94.484786 iter 30 value 93.452635 iter 40 value 93.050257 iter 50 value 84.322358 iter 60 value 83.220856 iter 70 value 83.023222 iter 80 value 82.990948 iter 90 value 82.954386 iter 100 value 82.899646 final value 82.899646 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 93.786394 iter 10 value 83.739892 iter 20 value 83.425688 iter 30 value 83.397799 iter 40 value 83.070246 iter 50 value 83.032501 iter 60 value 82.981849 iter 70 value 82.968130 iter 80 value 82.965144 iter 90 value 82.962690 iter 100 value 82.960273 final value 82.960273 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 102.633145 iter 10 value 94.492365 iter 20 value 94.394575 iter 30 value 93.570083 iter 40 value 93.362611 iter 50 value 84.521384 iter 60 value 84.433984 iter 70 value 81.626149 iter 80 value 80.003391 iter 90 value 78.300710 iter 100 value 78.237825 final value 78.237825 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 104.761887 iter 10 value 94.492267 iter 20 value 94.412365 iter 30 value 85.508507 iter 40 value 84.807626 iter 50 value 80.567983 iter 60 value 78.709300 iter 70 value 78.336569 iter 80 value 78.280173 iter 90 value 78.073902 iter 100 value 78.072670 final value 78.072670 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 117.809342 iter 10 value 94.300524 iter 20 value 93.626596 iter 30 value 87.246143 iter 40 value 85.460112 iter 50 value 83.393825 iter 60 value 83.070451 iter 70 value 83.059657 iter 80 value 83.059331 final value 83.059284 converged Fitting Repeat 1 # weights: 103 initial value 99.647547 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 97.813802 final value 93.869755 converged Fitting Repeat 3 # weights: 103 initial value 106.000182 final value 93.915746 converged Fitting Repeat 4 # weights: 103 initial value 97.666354 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 100.867174 final value 93.915746 converged Fitting Repeat 1 # weights: 305 initial value 101.833494 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 115.274479 final value 93.915746 converged Fitting Repeat 3 # weights: 305 initial value 100.058059 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 105.852628 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 114.430515 final value 93.915746 converged Fitting Repeat 1 # weights: 507 initial value 117.475099 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 122.159518 final value 93.915743 converged Fitting Repeat 3 # weights: 507 initial value 112.111527 iter 10 value 94.052127 iter 20 value 93.999495 iter 30 value 92.491825 iter 40 value 92.333319 final value 92.330141 converged Fitting Repeat 4 # weights: 507 initial value 101.390360 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 115.767069 final value 94.052910 converged Fitting Repeat 1 # weights: 103 initial value 97.399838 iter 10 value 94.053477 iter 20 value 92.632121 iter 30 value 88.977188 iter 40 value 88.627635 iter 50 value 88.510119 iter 60 value 86.852684 iter 70 value 86.391568 iter 80 value 86.365264 iter 90 value 86.363313 final value 86.363299 converged Fitting Repeat 2 # weights: 103 initial value 102.234318 iter 10 value 94.060146 iter 20 value 90.256791 iter 30 value 87.767914 iter 40 value 86.614467 iter 50 value 86.485025 iter 60 value 86.396512 iter 70 value 86.363750 final value 86.363299 converged Fitting Repeat 3 # weights: 103 initial value 101.484199 iter 10 value 94.053814 iter 20 value 93.907381 iter 30 value 93.845399 iter 40 value 93.684051 iter 50 value 90.135290 iter 60 value 86.030250 iter 70 value 85.400575 iter 80 value 85.180489 iter 90 value 84.888185 iter 100 value 84.810301 final value 84.810301 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 100.652906 iter 10 value 93.859040 iter 20 value 91.283846 iter 30 value 89.617926 iter 40 value 88.545526 iter 50 value 88.212537 iter 60 value 85.376492 iter 70 value 85.094224 iter 80 value 84.473118 iter 90 value 84.033882 iter 100 value 84.023016 final value 84.023016 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 96.287430 iter 10 value 94.056846 iter 20 value 93.845673 iter 30 value 90.275226 iter 40 value 89.308152 iter 50 value 89.206727 iter 60 value 88.464775 iter 70 value 86.686058 iter 80 value 85.756698 iter 90 value 85.743722 final value 85.743193 converged Fitting Repeat 1 # weights: 305 initial value 117.504315 iter 10 value 94.086533 iter 20 value 93.948629 iter 30 value 93.149451 iter 40 value 89.802422 iter 50 value 87.855897 iter 60 value 86.806496 iter 70 value 84.692638 iter 80 value 83.660634 iter 90 value 83.132757 iter 100 value 83.081252 final value 83.081252 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.651765 iter 10 value 94.084775 iter 20 value 93.968722 iter 30 value 93.600317 iter 40 value 90.896216 iter 50 value 86.537930 iter 60 value 85.785577 iter 70 value 85.337974 iter 80 value 84.542475 iter 90 value 84.196373 iter 100 value 83.824205 final value 83.824205 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 113.937437 iter 10 value 93.992956 iter 20 value 93.692052 iter 30 value 93.627571 iter 40 value 87.858914 iter 50 value 86.739420 iter 60 value 85.860922 iter 70 value 84.289405 iter 80 value 84.018152 iter 90 value 83.634763 iter 100 value 83.603483 final value 83.603483 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 101.780560 iter 10 value 89.336256 iter 20 value 86.959330 iter 30 value 85.765086 iter 40 value 85.532280 iter 50 value 85.484263 iter 60 value 85.449701 iter 70 value 85.230464 iter 80 value 84.023510 iter 90 value 83.397882 iter 100 value 83.220507 final value 83.220507 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 110.452136 iter 10 value 93.745335 iter 20 value 87.520577 iter 30 value 86.551435 iter 40 value 85.800262 iter 50 value 85.294139 iter 60 value 85.000686 iter 70 value 84.856379 iter 80 value 84.695253 iter 90 value 83.880335 iter 100 value 83.598946 final value 83.598946 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 103.962923 iter 10 value 95.480328 iter 20 value 88.054717 iter 30 value 85.620480 iter 40 value 84.061730 iter 50 value 82.708136 iter 60 value 82.412796 iter 70 value 82.367198 iter 80 value 82.340453 iter 90 value 82.316696 iter 100 value 82.302733 final value 82.302733 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.098262 iter 10 value 94.132768 iter 20 value 93.770816 iter 30 value 89.434864 iter 40 value 86.704406 iter 50 value 85.350926 iter 60 value 84.231395 iter 70 value 83.509302 iter 80 value 83.381650 iter 90 value 83.079740 iter 100 value 82.813448 final value 82.813448 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 115.340530 iter 10 value 93.841464 iter 20 value 86.867964 iter 30 value 86.017980 iter 40 value 84.712704 iter 50 value 83.338981 iter 60 value 82.876674 iter 70 value 82.707626 iter 80 value 82.547753 iter 90 value 82.437662 iter 100 value 82.328331 final value 82.328331 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 117.129416 iter 10 value 94.083706 iter 20 value 93.791728 iter 30 value 90.922870 iter 40 value 87.856574 iter 50 value 86.646522 iter 60 value 85.898734 iter 70 value 85.842689 iter 80 value 85.570194 iter 90 value 85.189661 iter 100 value 84.923955 final value 84.923955 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 106.809940 iter 10 value 94.259758 iter 20 value 93.757181 iter 30 value 93.662078 iter 40 value 88.215472 iter 50 value 86.303231 iter 60 value 85.516915 iter 70 value 84.172158 iter 80 value 83.795933 iter 90 value 83.219508 iter 100 value 83.059188 final value 83.059188 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.543342 final value 94.054584 converged Fitting Repeat 2 # weights: 103 initial value 95.819347 iter 10 value 93.917351 iter 20 value 93.916050 iter 30 value 93.654825 iter 40 value 93.636077 iter 50 value 93.632376 final value 93.632300 converged Fitting Repeat 3 # weights: 103 initial value 97.406344 final value 94.054525 converged Fitting Repeat 4 # weights: 103 initial value 98.464390 final value 94.054634 converged Fitting Repeat 5 # weights: 103 initial value 94.870226 iter 10 value 90.028390 iter 20 value 88.467643 iter 30 value 86.293652 iter 40 value 86.271621 iter 50 value 85.646827 iter 60 value 85.597682 iter 70 value 85.597566 final value 85.597541 converged Fitting Repeat 1 # weights: 305 initial value 103.772079 iter 10 value 93.874439 iter 20 value 93.870012 final value 93.869900 converged Fitting Repeat 2 # weights: 305 initial value 103.514315 iter 10 value 94.057346 iter 20 value 93.985478 iter 30 value 93.655183 final value 93.654582 converged Fitting Repeat 3 # weights: 305 initial value 97.230665 iter 10 value 93.718632 iter 20 value 93.714096 iter 30 value 93.620932 iter 40 value 88.905637 iter 50 value 87.913010 iter 60 value 87.120697 iter 70 value 87.036588 iter 80 value 86.990425 iter 90 value 86.988600 iter 100 value 86.987399 final value 86.987399 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 97.715723 iter 10 value 93.676094 iter 20 value 93.543079 iter 30 value 88.620161 iter 40 value 88.304318 iter 50 value 88.302643 final value 88.302547 converged Fitting Repeat 5 # weights: 305 initial value 96.476720 iter 10 value 91.180783 iter 20 value 86.972072 iter 30 value 86.908331 iter 40 value 86.904588 iter 50 value 86.896889 iter 60 value 86.893982 iter 60 value 86.893981 iter 60 value 86.893981 final value 86.893981 converged Fitting Repeat 1 # weights: 507 initial value 95.809104 iter 10 value 93.923606 iter 20 value 93.917208 final value 93.916893 converged Fitting Repeat 2 # weights: 507 initial value 106.153435 iter 10 value 94.052696 iter 20 value 93.948004 iter 30 value 93.674088 iter 40 value 86.998526 final value 86.998427 converged Fitting Repeat 3 # weights: 507 initial value 108.875019 iter 10 value 94.060561 iter 20 value 94.046642 iter 30 value 93.228266 iter 40 value 87.455508 iter 50 value 86.070760 iter 60 value 85.710600 iter 70 value 85.688136 final value 85.681717 converged Fitting Repeat 4 # weights: 507 initial value 142.972194 iter 10 value 93.763805 iter 20 value 93.665837 iter 30 value 93.662622 iter 40 value 87.007869 final value 86.998900 converged Fitting Repeat 5 # weights: 507 initial value 101.296179 iter 10 value 93.753476 iter 20 value 93.639488 iter 30 value 93.637970 iter 40 value 93.634770 iter 50 value 93.633523 iter 60 value 89.458081 iter 70 value 87.573381 iter 80 value 85.698314 iter 90 value 85.657255 iter 100 value 85.656547 final value 85.656547 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.269900 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 97.526944 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.086980 iter 10 value 93.786977 final value 93.783647 converged Fitting Repeat 4 # weights: 103 initial value 103.134496 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 97.982375 final value 94.052434 converged Fitting Repeat 1 # weights: 305 initial value 104.197805 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 107.959542 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 100.374956 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 110.867146 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 115.416245 iter 10 value 93.851385 iter 20 value 85.639774 iter 30 value 84.185830 iter 40 value 84.117304 final value 84.117181 converged Fitting Repeat 1 # weights: 507 initial value 104.697271 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 108.630725 final value 94.275362 converged Fitting Repeat 3 # weights: 507 initial value 108.195772 iter 10 value 87.872131 iter 20 value 87.852008 final value 87.851959 converged Fitting Repeat 4 # weights: 507 initial value 111.190442 final value 94.275362 converged Fitting Repeat 5 # weights: 507 initial value 111.066897 iter 10 value 93.209576 iter 20 value 93.205208 final value 93.205180 converged Fitting Repeat 1 # weights: 103 initial value 98.284334 iter 10 value 94.454027 iter 20 value 87.083909 iter 30 value 84.093878 iter 40 value 83.248410 iter 50 value 83.182694 iter 60 value 83.181193 final value 83.181187 converged Fitting Repeat 2 # weights: 103 initial value 97.836442 iter 10 value 94.486959 iter 20 value 93.881498 iter 30 value 93.824956 iter 40 value 93.345645 iter 50 value 89.291341 iter 60 value 88.155403 iter 70 value 87.958305 iter 80 value 84.441523 iter 90 value 83.371246 iter 100 value 82.729528 final value 82.729528 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 103.614924 iter 10 value 94.278616 iter 20 value 89.331616 iter 30 value 84.221208 iter 40 value 82.291757 iter 50 value 81.450032 iter 60 value 81.351911 iter 70 value 81.204142 iter 80 value 81.184273 iter 90 value 81.176177 final value 81.175857 converged Fitting Repeat 4 # weights: 103 initial value 102.713229 iter 10 value 94.488441 iter 20 value 93.623858 iter 30 value 86.884732 iter 40 value 85.084283 iter 50 value 84.524550 iter 60 value 83.588312 iter 70 value 83.435258 iter 80 value 83.434911 iter 80 value 83.434911 iter 80 value 83.434911 final value 83.434911 converged Fitting Repeat 5 # weights: 103 initial value 96.619414 iter 10 value 94.485935 iter 20 value 86.355112 iter 30 value 85.983221 iter 40 value 84.947062 iter 50 value 83.210035 iter 60 value 83.185109 iter 70 value 83.182098 iter 80 value 83.181436 final value 83.181186 converged Fitting Repeat 1 # weights: 305 initial value 105.416463 iter 10 value 96.909266 iter 20 value 90.954606 iter 30 value 83.652265 iter 40 value 83.484525 iter 50 value 83.314340 iter 60 value 83.249020 iter 70 value 83.174292 iter 80 value 81.328612 iter 90 value 80.783532 iter 100 value 79.783197 final value 79.783197 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 107.420443 iter 10 value 92.241394 iter 20 value 88.335948 iter 30 value 86.500666 iter 40 value 85.703325 iter 50 value 85.256544 iter 60 value 83.986709 iter 70 value 83.311134 iter 80 value 82.953838 iter 90 value 82.540411 iter 100 value 82.486085 final value 82.486085 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.487503 iter 10 value 94.432129 iter 20 value 92.914213 iter 30 value 87.171418 iter 40 value 84.404578 iter 50 value 82.887006 iter 60 value 80.874165 iter 70 value 80.766162 iter 80 value 80.504876 iter 90 value 80.045934 iter 100 value 79.823524 final value 79.823524 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.810490 iter 10 value 93.485151 iter 20 value 91.386721 iter 30 value 83.819090 iter 40 value 81.842447 iter 50 value 81.038552 iter 60 value 80.744829 iter 70 value 80.375331 iter 80 value 80.079974 iter 90 value 79.913751 iter 100 value 79.876595 final value 79.876595 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 100.762573 iter 10 value 95.682199 iter 20 value 93.531505 iter 30 value 84.147478 iter 40 value 83.412868 iter 50 value 83.190056 iter 60 value 82.782777 iter 70 value 80.838599 iter 80 value 79.923138 iter 90 value 79.697347 iter 100 value 79.655978 final value 79.655978 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 121.557543 iter 10 value 93.638056 iter 20 value 85.451017 iter 30 value 84.293841 iter 40 value 82.612419 iter 50 value 81.055101 iter 60 value 80.450320 iter 70 value 79.962244 iter 80 value 79.833113 iter 90 value 79.757373 iter 100 value 79.709494 final value 79.709494 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 109.302474 iter 10 value 94.418631 iter 20 value 92.592273 iter 30 value 84.667722 iter 40 value 83.906261 iter 50 value 83.203889 iter 60 value 81.437152 iter 70 value 80.737639 iter 80 value 80.441817 iter 90 value 79.856549 iter 100 value 79.643856 final value 79.643856 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 107.308549 iter 10 value 94.362032 iter 20 value 88.412280 iter 30 value 85.314927 iter 40 value 84.878588 iter 50 value 84.072253 iter 60 value 83.931735 iter 70 value 81.370842 iter 80 value 80.572257 iter 90 value 80.275529 iter 100 value 80.013392 final value 80.013392 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 117.641022 iter 10 value 94.538523 iter 20 value 94.445966 iter 30 value 93.845985 iter 40 value 88.842348 iter 50 value 86.668862 iter 60 value 86.071629 iter 70 value 84.536008 iter 80 value 82.569246 iter 90 value 81.343002 iter 100 value 80.855622 final value 80.855622 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 125.357531 iter 10 value 94.490045 iter 20 value 93.850043 iter 30 value 93.813704 iter 40 value 92.156872 iter 50 value 85.546545 iter 60 value 83.395643 iter 70 value 82.796013 iter 80 value 82.718223 iter 90 value 82.479279 iter 100 value 81.638956 final value 81.638956 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 94.627364 final value 94.485661 converged Fitting Repeat 2 # weights: 103 initial value 94.804453 final value 94.485846 converged Fitting Repeat 3 # weights: 103 initial value 103.728137 final value 94.485859 converged Fitting Repeat 4 # weights: 103 initial value 99.862375 final value 94.054042 converged Fitting Repeat 5 # weights: 103 initial value 98.891727 final value 94.485955 converged Fitting Repeat 1 # weights: 305 initial value 98.150685 iter 10 value 94.488331 iter 20 value 94.484217 iter 30 value 88.810059 iter 40 value 85.311335 iter 50 value 85.287830 iter 60 value 84.382639 iter 70 value 81.325496 iter 80 value 81.208623 iter 90 value 81.046116 iter 100 value 81.042309 final value 81.042309 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 98.319725 iter 10 value 94.491697 iter 20 value 94.024280 iter 30 value 84.584616 iter 40 value 84.256866 iter 50 value 84.249318 iter 60 value 82.646122 iter 70 value 81.287139 final value 81.252836 converged Fitting Repeat 3 # weights: 305 initial value 95.809973 iter 10 value 94.487834 iter 20 value 94.406345 iter 30 value 84.985485 iter 40 value 83.790978 iter 50 value 81.488852 iter 60 value 79.755371 iter 70 value 79.526574 iter 80 value 79.517975 iter 90 value 79.517841 iter 100 value 79.517331 final value 79.517331 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 101.504658 iter 10 value 94.487606 iter 20 value 93.815163 final value 93.815123 converged Fitting Repeat 5 # weights: 305 initial value 112.854261 iter 10 value 94.503049 iter 20 value 93.204059 iter 30 value 88.915389 iter 40 value 85.888630 iter 50 value 84.610290 iter 60 value 84.319660 iter 70 value 84.269112 iter 80 value 84.260000 iter 90 value 82.842697 iter 100 value 82.823246 final value 82.823246 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.507814 iter 10 value 94.492267 iter 20 value 94.444927 iter 30 value 94.060867 iter 40 value 94.051672 final value 94.051669 converged Fitting Repeat 2 # weights: 507 initial value 100.771288 iter 10 value 94.285102 iter 20 value 94.282620 iter 30 value 93.754587 iter 40 value 93.753769 final value 93.753648 converged Fitting Repeat 3 # weights: 507 initial value 101.545344 iter 10 value 93.234595 iter 20 value 93.223382 iter 30 value 93.173571 iter 40 value 93.172127 iter 50 value 93.162468 iter 60 value 93.161556 final value 93.161228 converged Fitting Repeat 4 # weights: 507 initial value 104.047912 iter 10 value 93.617943 iter 20 value 93.183604 iter 30 value 87.825091 iter 40 value 87.802682 iter 50 value 84.371982 iter 60 value 83.529535 iter 70 value 81.809073 iter 80 value 81.340104 iter 90 value 80.103418 iter 100 value 80.006083 final value 80.006083 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 111.410450 iter 10 value 94.492411 iter 20 value 87.874250 iter 30 value 84.590172 iter 40 value 84.588370 iter 50 value 84.586920 iter 60 value 84.580476 iter 70 value 84.250639 iter 80 value 82.981580 final value 82.978323 converged Fitting Repeat 1 # weights: 507 initial value 133.548164 iter 10 value 117.327727 iter 20 value 107.365644 iter 30 value 105.866691 iter 40 value 105.006300 iter 50 value 104.284820 iter 60 value 103.670814 iter 70 value 103.559582 iter 80 value 103.179754 iter 90 value 102.321733 iter 100 value 101.626126 final value 101.626126 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 128.978366 iter 10 value 117.200579 iter 20 value 108.616198 iter 30 value 106.915854 iter 40 value 105.666944 iter 50 value 105.533901 iter 60 value 104.619602 iter 70 value 102.022411 iter 80 value 101.560780 iter 90 value 101.362816 iter 100 value 101.121385 final value 101.121385 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 131.799323 iter 10 value 120.385351 iter 20 value 108.426939 iter 30 value 106.523135 iter 40 value 105.718009 iter 50 value 102.476432 iter 60 value 101.706948 iter 70 value 101.405634 iter 80 value 101.370107 iter 90 value 101.165473 iter 100 value 101.015277 final value 101.015277 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 127.121727 iter 10 value 116.455609 iter 20 value 112.504295 iter 30 value 104.277164 iter 40 value 101.877548 iter 50 value 101.252940 iter 60 value 101.003381 iter 70 value 100.762737 iter 80 value 100.471435 iter 90 value 100.412938 iter 100 value 100.392947 final value 100.392947 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 128.423060 iter 10 value 118.211202 iter 20 value 117.988021 iter 30 value 117.669383 iter 40 value 108.117007 iter 50 value 107.400151 iter 60 value 107.348558 iter 70 value 106.171419 iter 80 value 102.815116 iter 90 value 102.045038 iter 100 value 101.580435 final value 101.580435 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Mon Jun 3 04:26:26 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 39.634 1.946 41.604
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 33.024 | 2.012 | 35.229 | |
FreqInteractors | 0.247 | 0.016 | 0.266 | |
calculateAAC | 0.047 | 0.013 | 0.060 | |
calculateAutocor | 0.383 | 0.110 | 0.512 | |
calculateCTDC | 0.070 | 0.006 | 0.078 | |
calculateCTDD | 0.550 | 0.030 | 0.583 | |
calculateCTDT | 0.200 | 0.016 | 0.217 | |
calculateCTriad | 0.389 | 0.032 | 0.423 | |
calculateDC | 0.109 | 0.014 | 0.122 | |
calculateF | 0.372 | 0.016 | 0.388 | |
calculateKSAAP | 0.118 | 0.010 | 0.129 | |
calculateQD_Sm | 1.687 | 0.173 | 1.878 | |
calculateTC | 1.703 | 0.181 | 1.887 | |
calculateTC_Sm | 0.254 | 0.014 | 0.269 | |
corr_plot | 33.133 | 2.112 | 35.462 | |
enrichfindP | 0.533 | 0.070 | 9.530 | |
enrichfind_hp | 0.087 | 0.027 | 1.132 | |
enrichplot | 0.387 | 0.007 | 0.395 | |
filter_missing_values | 0.001 | 0.000 | 0.002 | |
getFASTA | 0.074 | 0.014 | 3.775 | |
getHPI | 0.001 | 0.000 | 0.001 | |
get_negativePPI | 0.002 | 0.000 | 0.001 | |
get_positivePPI | 0.001 | 0.000 | 0.001 | |
impute_missing_data | 0.002 | 0.000 | 0.002 | |
plotPPI | 0.083 | 0.004 | 0.089 | |
pred_ensembel | 13.657 | 0.489 | 10.113 | |
var_imp | 35.009 | 2.326 | 37.753 | |