Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-05-09 11:40:57 -0400 (Thu, 09 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4748 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4484 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4514 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4480 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 988/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HTqPCR 1.58.0 (landing page) Heidi Dvinge
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the HTqPCR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HTqPCR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: HTqPCR |
Version: 1.58.0 |
Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data HTqPCR |
StartedAt: 2024-05-09 00:59:59 -0000 (Thu, 09 May 2024) |
EndedAt: 2024-05-09 01:00:15 -0000 (Thu, 09 May 2024) |
EllapsedTime: 16.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data HTqPCR ### ############################################################################## ############################################################################## * checking for file ‘HTqPCR/DESCRIPTION’ ... OK * preparing ‘HTqPCR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘HTqPCR.Rnw’ using Sweave Loading required package: Biobase Loading required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply, union, unique, unsplit, which.max, which.min Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: RColorBrewer Loading required package: limma Attaching package: ‘limma’ The following object is masked from ‘package:BiocGenerics’: plotMA Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 1 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 2 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 3 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 4 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 5 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 6 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 1 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 2 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 3 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 4 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 5 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 6 is not drawn Warning in rbind(deparse.level, ...) : number of columns of result, 1, is not a multiple of vector length 2 of arg 2 Error: processing vignette 'HTqPCR.Rnw' failed with diagnostics: chunk 68 (label = Check HTqPCR news) Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) --- failed re-building ‘HTqPCR.Rnw’ SUMMARY: processing the following file failed: ‘HTqPCR.Rnw’ Error: Vignette re-building failed. Execution halted