Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-06-14 14:38 -0400 (Fri, 14 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4757 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4491 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 962/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.22.0 (landing page) Koustav Pal
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the HiCBricks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HiCBricks |
Version: 1.22.0 |
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HiCBricks.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings HiCBricks_1.22.0.tar.gz |
StartedAt: 2024-06-13 04:57:10 -0400 (Thu, 13 Jun 2024) |
EndedAt: 2024-06-13 05:04:06 -0400 (Thu, 13 Jun 2024) |
EllapsedTime: 415.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HiCBricks.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings HiCBricks_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/HiCBricks.Rcheck' * using R version 4.4.0 (2024-04-24 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'HiCBricks/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'HiCBricks' version '1.22.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'HiCBricks' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Brick_export_to_sparse 3.17 0.48 5.58 Brick_vizart_plot_heatmap 2.38 0.33 7.25 BrickContainer_unlink_resolution 2.38 0.23 5.37 Brick_local_score_differentiator 2.13 0.36 6.46 Brick_matrix_issparse 1.39 0.41 5.27 Brick_matrix_exists 1.39 0.36 5.33 Brick_matrix_maxdist 1.37 0.25 5.28 Brick_matrix_isdone 1.35 0.18 5.06 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'HiCBricks' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 1.44 | 0.34 | 4.06 | |
BrickContainer_change_output_directory | 1.39 | 0.14 | 2.81 | |
BrickContainer_get_path_to_file | 1.05 | 0.23 | 2.75 | |
BrickContainer_list_chromosomes | 1.17 | 0.16 | 2.81 | |
BrickContainer_list_experiment_name | 1.12 | 0.16 | 2.69 | |
BrickContainer_list_files | 1.17 | 0.09 | 2.66 | |
BrickContainer_list_output_directory | 1.02 | 0.14 | 2.45 | |
BrickContainer_list_resolutions | 0.98 | 0.19 | 2.56 | |
BrickContainer_unlink_resolution | 2.38 | 0.23 | 5.37 | |
Brick_add_ranges | 2.32 | 0.19 | 4.64 | |
Brick_call_compartments | 2.07 | 0.30 | 4.49 | |
Brick_export_to_sparse | 3.17 | 0.48 | 5.58 | |
Brick_fetch_range_index | 1.19 | 0.16 | 2.71 | |
Brick_fetch_row_vector | 1.85 | 0.22 | 3.94 | |
Brick_get_bintable | 1.19 | 0.20 | 2.72 | |
Brick_get_chrominfo | 1.16 | 0.16 | 2.47 | |
Brick_get_entire_matrix | 1.65 | 0.14 | 3.77 | |
Brick_get_matrix | 1.75 | 0.20 | 4.57 | |
Brick_get_matrix_mcols | 1.46 | 0.30 | 3.75 | |
Brick_get_matrix_within_coords | 2.09 | 0.31 | 4.33 | |
Brick_get_ranges | 1.13 | 0.09 | 2.55 | |
Brick_get_values_by_distance | 1.48 | 0.30 | 3.83 | |
Brick_get_vector_values | 1.44 | 0.27 | 4.53 | |
Brick_list_matrices | 1.03 | 0.21 | 2.62 | |
Brick_list_matrix_mcols | 1.02 | 0.16 | 2.80 | |
Brick_list_mcool_normalisations | 0 | 0 | 0 | |
Brick_list_mcool_resolutions | 0 | 0 | 0 | |
Brick_list_rangekeys | 0.95 | 0.24 | 2.56 | |
Brick_list_ranges_mcols | 0.95 | 0.26 | 3.35 | |
Brick_load_cis_matrix_till_distance | 1.16 | 0.20 | 3.64 | |
Brick_load_data_from_mcool | 0 | 0 | 0 | |
Brick_load_data_from_sparse | 0 | 0 | 0 | |
Brick_load_matrix | 1.48 | 0.41 | 3.90 | |
Brick_local_score_differentiator | 2.13 | 0.36 | 6.46 | |
Brick_make_ranges | 0.01 | 0.00 | 0.01 | |
Brick_matrix_dimensions | 1.36 | 0.36 | 4.69 | |
Brick_matrix_exists | 1.39 | 0.36 | 5.33 | |
Brick_matrix_filename | 1.50 | 0.19 | 4.42 | |
Brick_matrix_isdone | 1.35 | 0.18 | 5.06 | |
Brick_matrix_issparse | 1.39 | 0.41 | 5.27 | |
Brick_matrix_maxdist | 1.37 | 0.25 | 5.28 | |
Brick_matrix_minmax | 1.39 | 0.22 | 4.81 | |
Brick_mcool_normalisation_exists | 0 | 0 | 0 | |
Brick_rangekey_exists | 1.08 | 0.19 | 3.47 | |
Brick_return_region_position | 1.06 | 0.12 | 2.75 | |
Brick_vizart_plot_heatmap | 2.38 | 0.33 | 7.25 | |
Create_many_Bricks | 0.92 | 0.26 | 2.72 | |
Create_many_Bricks_from_mcool | 0 | 0 | 0 | |
load_BrickContainer | 1.08 | 0.16 | 3.17 | |