| Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-10-18 20:42 -0400 (Fri, 18 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4530 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1051/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
InterMine Team
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | ERROR | OK | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
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To the developers/maintainers of the InterMineR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/InterMineR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: InterMineR |
| Version: 1.26.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL InterMineR |
| StartedAt: 2024-10-16 16:19:33 -0400 (Wed, 16 Oct 2024) |
| EndedAt: 2024-10-16 16:20:05 -0400 (Wed, 16 Oct 2024) |
| EllapsedTime: 32.3 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL InterMineR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘InterMineR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘intersect’ in package ‘InterMineR’ Creating a new generic function for ‘union’ in package ‘InterMineR’ Creating a new generic function for ‘subtract’ in package ‘InterMineR’ ** help Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:41: unexpected section header '\arguments' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:42: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:50: unexpected section header '\arguments' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:51: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:59: unexpected section header '\arguments' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:60: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:63: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:66: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:69: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:72: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:80: unexpected section header '\arguments' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:81: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:84: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:87: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:90: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:98: unexpected section header '\arguments' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:99: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:102: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:105: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:108: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:116: unexpected section header '\arguments' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:117: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:120: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:123: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:126: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:134: unexpected section header '\arguments' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:135: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:138: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:141: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:144: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.19-bioc/meat/InterMineR/man/ListManager-methods.Rd:147: unknown macro '\item' *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: multiple methods tables found for ‘union’ Warning: multiple methods tables found for ‘subtract’ Warning: multiple methods tables found for ‘intersect’ Warning in fun(libname, pkgname) : Package 'InterMineR' is deprecated and will be removed from Bioconductor version 3.20 ** testing if installed package can be loaded from final location Warning: multiple methods tables found for ‘union’ Warning: multiple methods tables found for ‘subtract’ Warning: multiple methods tables found for ‘intersect’ Warning in fun(libname, pkgname) : Package 'InterMineR' is deprecated and will be removed from Bioconductor version 3.20 ** testing if installed package keeps a record of temporary installation path * DONE (InterMineR)