Back to Multiple platform build/check report for BioC 3.19:   simplified   long
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2024-03-04 11:39:31 -0500 (Mon, 04 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4676
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4414
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4441
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" 4417
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1258/2251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MIRit 0.99.13  (landing page)
Jacopo Ronchi
Snapshot Date: 2024-03-01 14:00:22 -0500 (Fri, 01 Mar 2024)
git_url: https://git.bioconductor.org/packages/MIRit
git_branch: devel
git_last_commit: 3a2a2cd
git_last_commit_date: 2024-02-12 09:24:04 -0500 (Mon, 12 Feb 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for MIRit on merida1


To the developers/maintainers of the MIRit package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MIRit.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: MIRit
Version: 0.99.13
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MIRit
StartedAt: 2024-03-01 20:32:54 -0500 (Fri, 01 Mar 2024)
EndedAt: 2024-03-01 20:37:57 -0500 (Fri, 01 Mar 2024)
EllapsedTime: 302.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MIRit
###
##############################################################################
##############################################################################


* checking for file ‘MIRit/DESCRIPTION’ ... OK
* preparing ‘MIRit’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MIRit.Rmd’ using rmarkdown
2024-03-01 20:35:16.875 R[89177:912455752] XType: com.apple.fonts is not accessible.
2024-03-01 20:35:16.876 R[89177:912455752] XType: XTFontStaticRegistry is enabled.

Quitting from lines 868-870 [targets] (MIRit.Rmd)
Error: processing vignette 'MIRit.Rmd' failed with diagnostics:

'getURL()' failed:
  URL: http://ophid.utoronto.ca/mirDIP/Http_U
  code: Not Found (HTTP 404).
--- failed re-building ‘MIRit.Rmd’

SUMMARY: processing the following file failed:
  ‘MIRit.Rmd’

Error: Vignette re-building failed.
Execution halted