Mustafa Erhan Ozer
| Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_19 |
| git_last_commit: 53d7b05 |
| git_last_commit_date: 2024-08-30 17:32:42 -0400 (Fri, 30 Aug 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-10-18 20:38 -0400 (Fri, 18 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4530 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2112/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.4.7 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | NA | |||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.4.7 |
| Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings SVMDO_1.4.7.tar.gz |
| StartedAt: 2024-10-17 05:42:33 -0400 (Thu, 17 Oct 2024) |
| EndedAt: 2024-10-17 05:47:30 -0400 (Thu, 17 Oct 2024) |
| EllapsedTime: 297.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings SVMDO_1.4.7.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.5 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.4.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 90480,6794,5741,27232,4744,4318
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3586,929,221935,2784,57380,388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2949,10243,6569,3119,284958,596
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79783,4729,9180,3312,1369,84706
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5241,1232,54148,825,25974,6934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2590,779,55788,2804,7494,7384
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1028,5270,358,55858,4126,2184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51458,129787,203068,6319,2643,4712
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 166785,942,3060,101180976,54578,22796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53335,513,119559,200186,27344,57104
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91647,4729,4357,1508,790955,2904
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 629,7052,434,51206,54205,1493
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2063,8517,8462,491,3483,563
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7389,124976,2908,1843,10999,2798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200205,5798,640,3651,54539,3645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54704,265,6324,6888,79731,84701
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26762,10682,147007,7480,7097,9997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 316,7172,142,6720,177,6609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 885,4654,57215,3308,219,55340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 24147,824,2266,3988,8722,48
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6602,27125,3988,6338,6387,2064
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3054,54675,487,249,26191,5184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4851,2099,2949,5625,3309,2804
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2194,79736,407040,207,2690,9388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 128486,2516,8714,4716,2689,2161
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5078,574447,6521,5367,56259,9560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1029,1353,64919,1355,7172,790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,53346,9131,4688,275,3460
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 493,275,4594,124976,5261,6492
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285,6571,10524,3948,5139,200186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 341,51144,516,2950,4853,25839
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8722,958,3375,3990,3054,55863
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6696,7916,54578,6517,1346,2805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 121268,5092,55768,3423,406934,5053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 126328,5331,4828,91574,51119,3251
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83693,1589,7078,55750,1786,56919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2784,9927,7275,63892,9091,54578
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4982,1270,4705,358,2584,57620
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64689,653509,9692,50506,2235,29880
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6515,10221,308,8202,84334,6352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54205,22978,79776,5091,2119,84334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1641,1444,132,11222,24147,7390
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84239,1606,2184,7421,55340,56923
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9779,92609,1312,1813,10243,27429
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6721,406982,4247,7916,2888,3930
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9672,55699,1581,217,1371,388962
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2638,79644,3990,54576,728294,2584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27125,7026,6402,338821,5161,6339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 885,1353,5095,3123,7390,7466
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51079,1646,1555,5080,84557,119559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1910,255738,8879,5799,2847,4790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6934,23129,1543,54798,563,2834
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5631,819,89874,509,133522,5836
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1646,5562,10616,1491,53335,1636
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1435,79633,3077,3980,84239,6392
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2303,5792,6609,341,859,5236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100128525,509,3098,26762,4543,2746
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2588,131669,132,7515,4149,55024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11254,7347,1815,153,5264,51458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3991,64241,6390,23474,3087,51316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23236,1230,54106,3291,5191,51300
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2787,7466,6901,149461,6938,23516
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5256,5293,4723,5799,147007,5825
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8604,6584,948,84701,1956,54576
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81033,1019,5970,29929,5563,1497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5618,2548,3158,2784,4846,64900
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51083,2992,1185,10379,340024,4594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4012,57176,10128,3460,3767,5365
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2593,5071,3066,336,1806,7376
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57001,3934,345,6183,5971,5830
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6519,56923,4524,8799,23274,2876
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1583,80270,3283,617,4695,9919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1499,7057,27089,3759,7388,1950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3490,64087,6319,2740,6514,6901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 355,54809,1650,11255,29929,11096
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 134,4722,1812,4715,29926,7431
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6531,5188,3596,4012,23417,4286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3685,10857,3159,5330,116519,124454
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 572,7078,203859,491,4594,100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1584,57570,5473,26119,5188,55163
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 462,114814,8803,793,1595,79644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3658,5188,4143,5824,79602,29880
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10875,5743,1443,656,5277,3667
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4864,156,3417,1509,1812,8743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1361,145264,4012,2798,6347,8648
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8462,29078,6492,1282,9451,407009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 111240474,132001,56623,858,10875,654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26119,8743,79783,2157,5370,23409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6356,63892,599,9076,5069,56997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64241,2063,57678,406937,2110,5618
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6948,4306,55572,9692,51555,2878
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4705,8504,104,51119,2194,3600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3709,24147,7056,51204,1352,221458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 868,3949,3117,3728,440138,4609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 364,5723,1716,56922,5499,23274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2992,53345,4695,5618,2739,4790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5830,4843,7466,5293,29968,2696
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55970,2052,3600,4712,1591,4547
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84572,23038,9526,5370,3673,3060
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4976,57107,790955,26003,836,7048
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5592,6402,1436,10135,57511,6374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3988,1201,6890,7026,64788,9104
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2110,5507,83439,137994,2678,56259
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7040,3663,10165,10537,116150,23654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1992,5328,5078,48,8195,79144
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6263,199,4790,23590,79796,1514
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23389,5473,7289,5327,2180,5824
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1591,6770,1514,2767,27232,15
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1571,1812,23175,4502,2767,2984
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407008,7498,10616,4878,728294,5501
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10062,2740,7915,84340,123099,10159
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5824,2778,2710,9056,5743,9054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56652,3242,57215,3995,51601,3596
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3565,788,100529063,5644,2653,427
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 655,84889,51738,5970,7412,51204
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
64.417 1.814 66.334
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.772 | 0.060 | 3.850 | |