Pierrick Roger
| Snapshot Date: 2024-06-16 14:00 -0400 (Sun, 16 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: RELEASE_3_19 |
| git_last_commit: fad38a4 |
| git_last_commit_date: 2024-04-30 11:37:31 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-06-18 17:58 -0400 (Tue, 18 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4758 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4492 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4464 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4464 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 200/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.10.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.10.0 |
| Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbChebi_1.10.0.tar.gz |
| StartedAt: 2024-06-17 01:05:14 -0400 (Mon, 17 Jun 2024) |
| EndedAt: 2024-06-17 01:09:32 -0400 (Mon, 17 Jun 2024) |
| EllapsedTime: 257.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbChebi_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/biodbChebi.Rcheck'
* using R version 4.4.0 (2024-04-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 3.83 3.28 123.84
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'biodbChebi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-06-17 01:08:52.876][biodb::testContext]
biodb.INFO [2024-06-17 01:08:52.879][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-17 01:08:52.881][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-06-17 01:08:52.882][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-17 01:08:52.884][biodb::testContext]
biodb.INFO [2024-06-17 01:08:52.892][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-17 01:08:52.895][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-17 01:08:52.905][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-17 01:08:52.907][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-17 01:08:52.908][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-17 01:08:52.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:52.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:52.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:52.914][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-17 01:08:52.946][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-17 01:08:52.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:52.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:52.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:52.951][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-17 01:08:52.952][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-17 01:08:52.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:52.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:52.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:52.957][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-17 01:08:52.958][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-17 01:08:52.960][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-17 01:08:52.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:52.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:52.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:52.964][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-17 01:08:52.965][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-17 01:08:52.967][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-17 01:08:52.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:52.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:52.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:52.971][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-17 01:08:52.973][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-17 01:08:52.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:52.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:52.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:52.977][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-17 01:08:52.979][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-17 01:08:52.980][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-17 01:08:52.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:52.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:52.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:52.984][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-17 01:08:52.986][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-17 01:08:52.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:52.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:52.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:52.990][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-17 01:08:52.991][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-17 01:08:52.993][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-17 01:08:52.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:52.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:52.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:52.997][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-17 01:08:52.998][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-17 01:08:53.000][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-17 01:08:53.001][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-17 01:08:53.002][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-17 01:08:53.003][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-17 01:08:53.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.008][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-17 01:08:53.009][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-17 01:08:53.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.014][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-17 01:08:53.015][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-17 01:08:53.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.020][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-17 01:08:53.021][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-17 01:08:53.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.025][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-17 01:08:53.027][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-17 01:08:53.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.031][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-17 01:08:53.032][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-17 01:08:53.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.037][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-17 01:08:53.038][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-17 01:08:53.042][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-17 01:08:53.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.047][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-17 01:08:53.048][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-17 01:08:53.049][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-17 01:08:53.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.056][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-17 01:08:53.084][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.099][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-17 01:08:53.101][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.102][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:08:53.103][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.105][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.106][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.107][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.108][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-17 01:08:53.109][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:08:53.111][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.112][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-17 01:08:53.113][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:08:53.114][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.116][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.117][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-17 01:08:53.117][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-17 01:08:53.117][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-17 01:08:53.117][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-17 01:08:53.117][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-17 01:08:53.118][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:08:53.119][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:08:53.121][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:08:53.122][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:08:53.129][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:08:53.130][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:08:53.131][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.132][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.133][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:08:53.134][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:08:53.136][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.137][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.138][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-17 01:08:53.140][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.141][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-17 01:08:53.143][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.144][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:08:53.145][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.146][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.147][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.149][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.150][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-17 01:08:53.151][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:08:53.152][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.153][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-17 01:08:53.155][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:08:53.156][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.157][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.158][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-17 01:08:53.158][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-17 01:08:53.158][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-17 01:08:53.158][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-17 01:08:53.158][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-17 01:08:53.159][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:08:53.161][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:08:53.162][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:08:53.163][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:08:53.164][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:08:53.165][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:08:53.166][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.167][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.169][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:08:53.170][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:08:53.171][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.172][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.174][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-17 01:08:53.176][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.177][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-17 01:08:53.178][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.179][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:08:53.181][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.182][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.183][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.184][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.186][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-17 01:08:53.187][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:08:53.188][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.189][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-17 01:08:53.191][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:08:53.192][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.193][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.194][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.195][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:08:53.197][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:08:53.198][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:08:53.199][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:08:53.200][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:08:53.201][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:08:53.202][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.204][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.205][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:08:53.206][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:08:53.207][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.208][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.210][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-17 01:08:53.212][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.213][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-17 01:08:53.214][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.215][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:08:53.217][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.218][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.219][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.220][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.221][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-17 01:08:53.223][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:08:53.224][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.225][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-17 01:08:53.226][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:08:53.227][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.229][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.230][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.231][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:08:53.232][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:08:53.233][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:08:53.234][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:08:53.236][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:08:53.237][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:08:53.238][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.239][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.240][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:08:53.241][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:08:53.242][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.244][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:08:53.247][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-17 01:08:53.248][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.348][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-17 01:08:53.352][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-17 01:08:53.354][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-17 01:08:53.355][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-17 01:08:53.357][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-17 01:08:53.359][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-17 01:08:53.360][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-17 01:08:53.362][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-17 01:08:53.363][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-17 01:08:53.365][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-17 01:08:53.366][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-17 01:08:53.368][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-17 01:08:53.370][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-17 01:08:53.371][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-17 01:08:53.373][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-17 01:08:53.374][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-17 01:08:53.376][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-17 01:08:53.378][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-17 01:08:53.379][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-17 01:08:53.381][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-17 01:08:53.383][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-17 01:08:53.385][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-17 01:08:53.386][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-17 01:08:53.388][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-17 01:08:53.390][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-17 01:08:53.391][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-17 01:08:53.393][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-17 01:08:53.394][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-17 01:08:53.396][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-17 01:08:53.398][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-17 01:08:53.399][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-17 01:08:53.401][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-17 01:08:53.402][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-17 01:08:53.404][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-17 01:08:53.405][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-17 01:08:53.407][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-17 01:08:53.408][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-17 01:08:53.410][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-17 01:08:53.412][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-17 01:08:53.413][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-17 01:08:53.415][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-17 01:08:53.416][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-17 01:08:53.418][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-17 01:08:53.419][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-17 01:08:53.421][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-17 01:08:53.422][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-17 01:08:53.424][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-17 01:08:53.426][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-17 01:08:53.427][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-17 01:08:53.429][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-17 01:08:53.430][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-17 01:08:53.432][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-17 01:08:53.433][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-17 01:08:53.435][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-17 01:08:53.436][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-17 01:08:53.438][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-17 01:08:53.440][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-17 01:08:53.441][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-17 01:08:53.443][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-17 01:08:53.445][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-17 01:08:53.447][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-17 01:08:53.449][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-17 01:08:53.451][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-17 01:08:53.454][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-17 01:08:53.455][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-17 01:08:53.457][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-17 01:08:53.459][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-17 01:08:53.460][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-17 01:08:53.462][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-17 01:08:53.463][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-17 01:08:53.465][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-17 01:08:53.466][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-17 01:08:53.468][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-17 01:08:53.469][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-17 01:08:53.471][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-17 01:08:53.473][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-17 01:08:53.474][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-17 01:08:53.476][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-17 01:08:53.477][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-17 01:08:53.479][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-17 01:08:53.480][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-17 01:08:53.482][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-17 01:08:53.483][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-17 01:08:53.518][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-17 01:08:53.521][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-17 01:08:53.524][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-17 01:08:53.525][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.528][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:08:53.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:53.677][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-06-17 01:08:53.686][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-06-17 01:08:53.689][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.691][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.692][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.694][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:08:53.695][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.697][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.698][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.700][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-06-17 01:08:53.701][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-17 01:08:53.702][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:08:53.703][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.705][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-06-17 01:08:53.706][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:08:53.707][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-06-17 01:08:53.707][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-06-17 01:08:53.707][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-06-17 01:08:53.707][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-06-17 01:08:53.707][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-06-17 01:08:53.707][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-06-17 01:08:53.707][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-06-17 01:08:53.707][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-06-17 01:08:53.707][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-06-17 01:08:53.707][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-06-17 01:08:53.707][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-06-17 01:08:53.709][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-17 01:08:53.710][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-17 01:08:53.710][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-17 01:08:53.710][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-17 01:08:53.711][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-17 01:08:53.712][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:08:53.713][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:08:53.714][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:08:53.716][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:08:53.717][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:08:53.718][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:08:53.719][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-17 01:08:53.719][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-06-17 01:08:53.720][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:08:53.721][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:08:53.723][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-17 01:08:53.724][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-06-17 01:08:53.724][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-06-17 01:08:53.730][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-17 01:08:53.732][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-17 01:08:53.734][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-06-17 01:08:53.735][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-17 01:08:53.737][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-17 01:08:53.739][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-17 01:08:53.765][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-06-17 01:08:53.766][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-06-17 01:08:53.770][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-06-17 01:08:53.774][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-06-17 01:08:53.778][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-17 01:08:53.779][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-17 01:08:53.781][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-06-17 01:08:53.782][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-06-17 01:08:53.794][biodb::testThat]
biodb.INFO [2024-06-17 01:08:53.796][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-06-17 01:08:53.798][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:08:53.800][biodb::testThat]
biodb.TRACE[2024-06-17 01:08:53.856][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-06-17 01:08:53.860][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:08:53.865][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:08:53.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:08:53.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:53.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:53.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:53.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:53.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:53.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:08:53.923][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:53.926][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:53.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:53.930][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:53.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:53.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:53.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:53.961][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:53.963][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:53.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:53.967][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:54.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:54.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.015][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:54.017][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:54.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.024][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:54.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:54.034][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:54.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:54.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:54.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:54.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:54.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:54.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.066][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:54.068][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:54.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.075][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:54.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:54.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.083][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:08:54.086][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.090][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.092][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:08:54.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.100][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.106][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.117][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:54.119][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:54.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:54.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:54.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.185][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:08:54.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:54.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.194][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:08:54.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:54.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.202][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:54.204][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:54.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.208][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:54.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:54.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:08:54.349][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-06-17 01:08:54.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:54.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:54.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:54.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:54.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:54.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:54.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.444][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-17 01:08:54.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-17 01:08:54.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-17 01:08:54.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-17 01:08:54.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.459][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-17 01:08:54.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-17 01:08:54.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.465][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-17 01:08:54.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-17 01:08:54.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.681][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.683][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:54.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:54.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:54.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:54.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:54.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.769][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:54.771][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:54.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.773][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:54.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:54.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:54.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:54.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.811][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:54.812][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:54.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.815][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.816][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:54.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:54.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.859][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.863][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:54.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.897][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.899][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:54.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:54.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:54.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:54.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:54.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:54.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.948][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:54.950][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:54.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:54.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:54.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.978][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-17 01:08:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:54.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.983][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-17 01:08:54.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:54.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.988][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-17 01:08:54.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:54.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.994][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-17 01:08:54.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:54.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:54.998][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:54.999][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-17 01:08:55.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.016][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.021][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.027][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.032][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.033][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.035][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.037][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:55.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:55.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:55.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:55.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:55.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.074][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:55.076][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:55.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.121][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.123][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:55.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:55.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:55.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:55.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:55.165][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:55.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:55.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:55.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.185][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:55.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:55.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.189][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.199][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:55.201][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:55.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.205][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.217][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:55.219][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:55.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.224][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.235][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:55.238][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:55.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.242][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.256][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.260][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.270][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.272][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.275][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.282][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:55.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:55.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.286][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:55.296][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:55.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.306][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-17 01:08:55.308][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:55.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.311][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.319][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:55.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:55.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.332][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:55.333][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:55.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.336][ef$get] fields variable is a list.
biodb.INFO [2024-06-17 01:08:55.350][biodb::testThat]
biodb.INFO [2024-06-17 01:08:55.351][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-17 01:08:55.353][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:08:55.354][biodb::testThat]
biodb.DEBUG[2024-06-17 01:08:55.369][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2024-06-17 01:08:55.375][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:08:55.383][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2024-06-17 01:08:55.385][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:08:55.388][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2024-06-17 01:08:55.395][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:08:55.418][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:08:55.420][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:08:55.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:08:55.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:55.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:55.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:55.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:55.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:55.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:08:55.443][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:55.445][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:55.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:55.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:55.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.471][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:55.473][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:55.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.476][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.478][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:55.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:55.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.483][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:55.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:55.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.487][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:55.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:55.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.494][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:55.496][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:55.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.499][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:55.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:55.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.507][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.508][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.510][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:55.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.517][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.518][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.521][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.523][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:55.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.528][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:08:55.529][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:55.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.531][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.533][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:08:55.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:55.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:55.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:55.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.543][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:55.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:55.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.550][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:55.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:55.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.559][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:55.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.566][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:08:55.568][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:55.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.572][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:08:55.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:55.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.577][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:55.578][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:55.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.581][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:55.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:55.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:55.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:55.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:55.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:55.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:55.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:55.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:55.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:55.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:55.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:55.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:55.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:55.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:55.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:55.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:55.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:55.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:55.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:55.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:08:55.638][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2024-06-17 01:08:55.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-17 01:08:55.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-17 01:08:55.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-17 01:08:55.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-17 01:08:55.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-17 01:08:55.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-17 01:08:55.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-17 01:08:55.668][biodb::testThat]
biodb.INFO [2024-06-17 01:08:55.670][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-17 01:08:55.671][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:08:55.672][biodb::testThat]
biodb.TRACE[2024-06-17 01:08:55.676][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:55.677][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:55.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.680][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:08:55.682][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-06-17 01:08:55.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:55.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:55.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:55.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:55.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:55.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:55.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:08:55.739][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-06-17 01:08:55.746][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-06-17 01:08:55.767][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:08:55.782][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-06-17 01:08:55.784][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:08:55.788][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-06-17 01:08:55.821][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:08:55.828][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:08:55.831][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-17 01:08:55.834][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:08:55.853][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-17 01:08:55.856][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-06-17 01:08:55.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:55.877][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:55.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.881][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:55.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:55.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.884][ef$get] fields variable is a list.
biodb.INFO [2024-06-17 01:08:55.892][biodb::testThat]
biodb.INFO [2024-06-17 01:08:55.893][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-06-17 01:08:55.894][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:08:55.895][biodb::testThat]
biodb.TRACE[2024-06-17 01:08:55.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:55.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:55.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:55.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:55.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:55.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:55.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:55.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:55.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:08:56.004][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:08:56.008][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:08:56.010][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-17 01:08:56.013][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:08:56.016][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-06-17 01:08:56.046][biodb::testThat]
biodb.INFO [2024-06-17 01:08:56.048][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-06-17 01:08:56.049][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:08:56.051][biodb::testThat]
biodb.TRACE[2024-06-17 01:08:56.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:56.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:56.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:56.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:56.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:56.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:56.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:56.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:56.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:56.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:56.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:56.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.120][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-17 01:08:56.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-17 01:08:56.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.125][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-17 01:08:56.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-17 01:08:56.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.131][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-17 01:08:56.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-17 01:08:56.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.137][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-17 01:08:56.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-17 01:08:56.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:56.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:56.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:56.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:56.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:56.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:56.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:56.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:56.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:56.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:56.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:56.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.225][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-17 01:08:56.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-17 01:08:56.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.234][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-17 01:08:56.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-17 01:08:56.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.242][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-17 01:08:56.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-17 01:08:56.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:56.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-17 01:08:56.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-17 01:08:56.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:56.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-17 01:08:56.272][biodb::testThat]
biodb.INFO [2024-06-17 01:08:56.274][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-17 01:08:56.276][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:08:56.278][biodb::testThat]
biodb.INFO [2024-06-17 01:08:56.298][biodb::testThat]
biodb.INFO [2024-06-17 01:08:56.300][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-17 01:08:56.303][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:08:56.305][biodb::testThat]
biodb.INFO [2024-06-17 01:08:56.319][biodb::testThat]
biodb.INFO [2024-06-17 01:08:56.326][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-17 01:08:56.328][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:08:56.329][biodb::testThat]
biodb.DEBUG[2024-06-17 01:08:56.334][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-06-17 01:08:56.996][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-06-17 01:08:57.877][biodb::testThat]
biodb.INFO [2024-06-17 01:08:57.880][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-17 01:08:57.882][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:08:57.884][biodb::testThat]
biodb.DEBUG[2024-06-17 01:08:58.294][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-06-17 01:08:58.698][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:58.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:58.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:58.702][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:58.703][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:58.704][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:58.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:58.707][ef$get] fields variable is a list.
biodb.INFO [2024-06-17 01:08:58.709][biodb::testThat]
biodb.INFO [2024-06-17 01:08:58.710][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-06-17 01:08:58.711][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:08:58.713][biodb::testThat]
biodb.TRACE[2024-06-17 01:08:58.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:58.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:58.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:58.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:58.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:58.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:58.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:58.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:58.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:58.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:58.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:58.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:08:58.839][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:08:58.843][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:08:58.845][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-17 01:08:58.846][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:08:58.849][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-17 01:08:58.922][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:08:58.926][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:08:58.928][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-17 01:08:58.930][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:08:58.932][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-06-17 01:08:58.956][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-17 01:08:58.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-17 01:08:58.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:58.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:58.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:58.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:58.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:58.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:58.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:58.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:58.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:58.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:58.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:58.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:58.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:58.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:58.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:58.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:58.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:58.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:58.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:58.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:58.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:58.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:08:59.001][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:08:59.006][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:08:59.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-17 01:08:59.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:08:59.021][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-17 01:08:59.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:08:59.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:59.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:59.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:59.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:59.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:59.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:59.039][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-06-17 01:08:59.086][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:08:59.088][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-06-17 01:08:59.091][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:08:59.104][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2024-06-17 01:08:59.106][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:08:59.108][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:08:59.109][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:08:59.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:08:59.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:59.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:59.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:59.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:59.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:59.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:08:59.129][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.131][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.133][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.140][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:59.142][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:59.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.144][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:59.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:59.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.151][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:59.152][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:59.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.154][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:59.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:59.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:59.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:59.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:59.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:59.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:59.180][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:59.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.182][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:59.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:59.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.189][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:59.190][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:59.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.194][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:08:59.196][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.198][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.200][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:08:59.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:59.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:59.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.210][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:59.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:59.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.216][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:59.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:59.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.220][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:59.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:59.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.227][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:08:59.228][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:59.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.231][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:08:59.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:59.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.237][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:59.238][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:59.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:59.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:59.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:59.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:59.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:59.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:59.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:59.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:59.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:08:59.306][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-06-17 01:08:59.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:08:59.335][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:08:59.339][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:08:59.341][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-17 01:08:59.342][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:08:59.358][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-17 01:08:59.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:08:59.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:59.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:59.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:59.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:59.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:59.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:08:59.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:08:59.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:08:59.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:59.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:59.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:59.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:59.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:59.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:59.427][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-06-17 01:08:59.429][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:08:59.431][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-06-17 01:08:59.434][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:08:59.451][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2024-06-17 01:08:59.459][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:08:59.461][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:08:59.463][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:08:59.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:08:59.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:59.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:59.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:59.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:59.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:59.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:08:59.484][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.485][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.489][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.496][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:59.499][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:59.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.502][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.504][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:59.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:59.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.510][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:59.512][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:59.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.515][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:59.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:59.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.525][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:59.526][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:59.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.528][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:59.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:59.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.536][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:59.537][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:59.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.540][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:59.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:59.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.547][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:59.549][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:59.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.552][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.554][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:08:59.556][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.559][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.561][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:08:59.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.566][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:59.567][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:59.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:59.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:59.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.578][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:59.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:59.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.582][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:08:59.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:08:59.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.591][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:08:59.592][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:59.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.595][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:08:59.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:08:59.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.608][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:59.610][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:59.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.614][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:08:59.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:08:59.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:59.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:59.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:59.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:59.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:08:59.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:08:59.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:08:59.706][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-06-17 01:08:59.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:08:59.778][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:08:59.783][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:08:59.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-17 01:08:59.788][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:08:59.791][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-17 01:08:59.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:08:59.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:59.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:59.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:59.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:59.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:59.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:08:59.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:08:59.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:08:59.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:59.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:59.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:59.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:59.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:59.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:08:59.861][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-06-17 01:08:59.862][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:08:59.865][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-06-17 01:08:59.869][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:08:59.887][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2024-06-17 01:08:59.890][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:08:59.892][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:08:59.895][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:08:59.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:08:59.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:08:59.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:08:59.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:08:59.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:08:59.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:08:59.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:08:59.925][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.927][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.931][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:08:59.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:08:59.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.941][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:08:59.943][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:08:59.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.949][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:08:59.951][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:08:59.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.955][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.958][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:08:59.959][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:08:59.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.963][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:08:59.967][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:08:59.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.971][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.974][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:59.976][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:08:59.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.980][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.982][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:08:59.984][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:08:59.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.988][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.990][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:59.993][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:08:59.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:08:59.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:08:59.999][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:00.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:00.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:00.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:00.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.023][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:00.025][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:00.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.029][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.031][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:00.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:00.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.040][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:00.042][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:00.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.046][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:00.130][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-06-17 01:09:00.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:00.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:00.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:00.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:00.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:00.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:00.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:00.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:00.191][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-06-17 01:09:00.220][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:00.223][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-06-17 01:09:00.226][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:00.241][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2024-06-17 01:09:00.242][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:00.244][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:00.246][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:00.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:00.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:00.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:00.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:00.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:00.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:00.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:00.270][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.272][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.276][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.285][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:00.286][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:00.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.289][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.290][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:00.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:00.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.294][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:00.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:00.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.300][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.302][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:00.303][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:00.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.305][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.307][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:00.309][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:00.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.311][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.313][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:00.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.317][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.318][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:00.320][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:00.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.324][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:00.325][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:00.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:00.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:00.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.335][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:00.336][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:00.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.338][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:00.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:00.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.345][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:00.347][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:00.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.349][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:00.409][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-06-17 01:09:00.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:00.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:00.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:00.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:00.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:00.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:00.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:00.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:00.474][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-06-17 01:09:00.476][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:00.479][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-06-17 01:09:00.483][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:00.500][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2024-06-17 01:09:00.502][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:00.504][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:00.506][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:00.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:00.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:00.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:00.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:00.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:00.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:00.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:00.525][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.529][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.536][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:00.537][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:00.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.540][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.541][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:00.543][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:00.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.551][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.553][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:00.555][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:00.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.557][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.559][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:00.560][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:00.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.562][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.564][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:00.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:00.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.569][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:00.571][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:00.576][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:00.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.580][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:00.582][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:00.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.584][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.586][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:00.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:00.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.592][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:00.594][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:00.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.600][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:00.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.608][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:00.610][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:00.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.614][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:00.677][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-06-17 01:09:00.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:00.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:00.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:00.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:00.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:00.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:00.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:00.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:00.730][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-06-17 01:09:00.731][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:00.733][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-06-17 01:09:00.735][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:00.749][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2024-06-17 01:09:00.751][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:00.752][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:00.754][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:00.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:00.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:00.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:00.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:00.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:00.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:00.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:00.773][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.774][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.776][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.783][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:00.784][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:00.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.787][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.788][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:00.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:00.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.794][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:00.795][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:00.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.798][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:00.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:00.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.809][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:00.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:00.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.815][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:00.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:00.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:00.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:00.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.829][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:00.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:00.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.837][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:00.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:00.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.842][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.845][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:00.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:00.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.851][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:00.859][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.864][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:00.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:00.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:00.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.873][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:00.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:00.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.880][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:00.881][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:00.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.884][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:00.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:00.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.891][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:00.892][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:00.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.895][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.896][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:00.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:00.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.902][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:00.903][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:00.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.905][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:00.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:00.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:00.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:00.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:00.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:00.963][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-06-17 01:09:00.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:00.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:00.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:00.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:00.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:00.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:00.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:00.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:00.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:00.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:00.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:01.000][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-06-17 01:09:01.001][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:01.003][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-06-17 01:09:01.006][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:01.024][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2024-06-17 01:09:01.026][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:01.028][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:01.030][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:01.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:01.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:01.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:01.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:01.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:01.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:01.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:01.049][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.053][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.060][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:01.062][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:01.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.065][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.068][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:01.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:01.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.076][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:01.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:01.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.082][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.085][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:01.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:01.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.093][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:01.095][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:01.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.098][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:01.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:01.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.106][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.108][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.110][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.117][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:01.119][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:01.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.121][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.123][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:01.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:01.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.129][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:01.130][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.133][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.134][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:01.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.140][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.141][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.149][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.157][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:01.158][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:01.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.161][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:01.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:01.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.168][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:01.169][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:01.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.171][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.173][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:01.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:01.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.178][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:01.180][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:01.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.182][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:01.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:01.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:01.241][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-06-17 01:09:01.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:01.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:01.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:01.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:01.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:01.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:01.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:01.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:01.282][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-06-17 01:09:01.283][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:01.285][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-06-17 01:09:01.287][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:01.300][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2024-06-17 01:09:01.302][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:01.304][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:01.305][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:01.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:01.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:01.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:01.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:01.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:01.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:01.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:01.325][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.329][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.336][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:01.337][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:01.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.340][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.341][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:01.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:01.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.346][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:01.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:01.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:01.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:01.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:01.358][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:01.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:01.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:01.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.378][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:01.379][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:01.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.382][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.383][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:01.385][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.387][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.389][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:01.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.394][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.395][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.397][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.405][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:01.406][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:01.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:01.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:01.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.422][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:01.424][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:01.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.426][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.428][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:01.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:01.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.433][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:01.434][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:01.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:01.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:01.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:01.501][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-06-17 01:09:01.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:01.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:01.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:01.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:01.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:01.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:01.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:01.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:01.533][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-06-17 01:09:01.534][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:01.536][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-06-17 01:09:01.538][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:01.551][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2024-06-17 01:09:01.553][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:01.555][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:01.556][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:01.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:01.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:01.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:01.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:01.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:01.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:01.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:01.581][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.582][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.585][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.591][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:01.593][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:01.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.595][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:01.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:01.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.602][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:01.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:01.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.606][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:01.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:01.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:01.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:01.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.618][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:01.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:01.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.626][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.627][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.629][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.636][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:01.637][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:01.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.641][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:01.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.648][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:01.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.656][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.663][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:01.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:01.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.667][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:01.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:01.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.674][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:01.675][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:01.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.677][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.679][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:01.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:01.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.684][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:01.685][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:01.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.688][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:01.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:01.754][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-06-17 01:09:01.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:01.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:01.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:01.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:01.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:01.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:01.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:01.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:01.786][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-06-17 01:09:01.787][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:01.789][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-06-17 01:09:01.791][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:01.808][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2024-06-17 01:09:01.810][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:01.812][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:01.814][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:01.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:01.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:01.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:01.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:01.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:01.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:01.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:01.833][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.842][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.850][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:01.852][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:01.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.854][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:01.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:01.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.863][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:01.865][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:01.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:01.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:01.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.876][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:01.877][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:01.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.880][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:01.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:01.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.887][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.888][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.890][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:01.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.897][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:01.899][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:01.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.903][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.905][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:01.906][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.909][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.910][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:01.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:01.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.915][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.917][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.919][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:01.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.926][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:01.927][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:01.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.930][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:01.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:01.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.936][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:01.938][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:01.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.942][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:01.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:01.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.947][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:01.948][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:01.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.951][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:01.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:01.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:01.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:01.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:01.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:01.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:01.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:02.019][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-06-17 01:09:02.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:02.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:02.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:02.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:02.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:02.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:02.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:02.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:02.051][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-06-17 01:09:02.052][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:02.054][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-06-17 01:09:02.056][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:02.069][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2024-06-17 01:09:02.073][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:02.075][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:02.076][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:02.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:02.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:02.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:02.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:02.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:02.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:02.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:02.095][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.096][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.099][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.106][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:02.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:02.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.110][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.112][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:02.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:02.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.124][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:02.125][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:02.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.128][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.130][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:02.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:02.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.135][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:02.136][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:02.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.139][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:02.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:02.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.147][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:02.149][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:02.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.152][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:02.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:02.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.159][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:02.161][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:02.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.163][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.165][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:02.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.169][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.170][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:02.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.181][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.188][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:02.189][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:02.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.192][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:02.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:02.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.199][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:02.200][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:02.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.203][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.204][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:02.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:02.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.210][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:02.211][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:02.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:02.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:02.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:02.279][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-06-17 01:09:02.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:02.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:02.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:02.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:02.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:02.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:02.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:02.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:02.313][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-06-17 01:09:02.314][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:02.316][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-06-17 01:09:02.319][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:02.338][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2024-06-17 01:09:02.341][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:02.343][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:02.344][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:02.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:02.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:02.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:02.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:02.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:02.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:02.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:02.366][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.369][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.373][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.383][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:02.385][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:02.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.389][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.392][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:02.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:02.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.400][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:02.402][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:02.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.404][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.406][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:02.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:02.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.411][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:02.413][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:02.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.421][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:02.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:02.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:02.429][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:02.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.431][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:02.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:02.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.438][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:02.439][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:02.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.442][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.443][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:02.445][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.448][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.451][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.463][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.469][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:02.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:02.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:02.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:02.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.480][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:02.481][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:02.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.483][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.485][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:02.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:02.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.490][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:02.491][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:02.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.494][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:02.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:02.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:02.562][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-06-17 01:09:02.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:02.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:02.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:02.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:02.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:02.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:02.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:02.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:02.593][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-06-17 01:09:02.594][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:02.596][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-06-17 01:09:02.598][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:02.611][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2024-06-17 01:09:02.613][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:02.615][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:02.616][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:02.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:02.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:02.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:02.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:02.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:02.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:02.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:02.634][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.635][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.644][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:02.645][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:02.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.648][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.649][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:02.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:02.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.654][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:02.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:02.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.658][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:02.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:02.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:02.666][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:02.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.668][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.670][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:02.671][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:02.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.675][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:02.676][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:02.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.685][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:02.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.690][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.691][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:02.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.698][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.707][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:02.708][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:02.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.711][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:02.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:02.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.717][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:02.719][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:02.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:02.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:02.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.728][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:02.729][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:02.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.731][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:02.783][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-06-17 01:09:02.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:02.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:02.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:02.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:02.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:02.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:02.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:02.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:02.820][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-06-17 01:09:02.821][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:02.823][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-06-17 01:09:02.825][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:02.839][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2024-06-17 01:09:02.840][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:02.842][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:02.844][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:02.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:02.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:02.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:02.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:02.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:02.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:02.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:02.864][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.866][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.868][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.875][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:02.876][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:02.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.878][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.880][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:02.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:02.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.885][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:02.886][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:02.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.889][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:02.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:02.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.895][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:02.897][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:02.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.899][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.901][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:02.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:02.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.904][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.906][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:02.907][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:02.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.910][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.911][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:02.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.915][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.917][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:02.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:02.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.924][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.925][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.927][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:02.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.934][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:02.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:02.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.938][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:02.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:02.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.952][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:02.953][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:02.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.956][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.957][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:02.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:02.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.963][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:02.964][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:02.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.967][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:02.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:02.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:03.021][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-06-17 01:09:03.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:03.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:03.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:03.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:03.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:03.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:03.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:03.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:03.053][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-06-17 01:09:03.054][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:03.056][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-06-17 01:09:03.058][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:03.075][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2024-06-17 01:09:03.077][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:03.080][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:03.082][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:03.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:03.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:03.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:03.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:03.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:03.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:03.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:03.113][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.124][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:03.126][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:03.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.128][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.130][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:03.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:03.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.135][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:03.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:03.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.140][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:03.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:03.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:03.148][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:03.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.152][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:03.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:03.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.162][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.164][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.166][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.173][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:03.174][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:03.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.177][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.178][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:03.180][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.182][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.183][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.189][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.191][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.204][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:03.206][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:03.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.208][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:03.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:03.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.215][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:03.217][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:03.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.220][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.221][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:03.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:03.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.226][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:03.228][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:03.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:03.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:03.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:03.297][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-06-17 01:09:03.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:03.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:03.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:03.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:03.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:03.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:03.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:03.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:03.329][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-06-17 01:09:03.330][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:03.332][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-06-17 01:09:03.334][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:03.348][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2024-06-17 01:09:03.349][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:03.351][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:03.353][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:03.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:03.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:03.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:03.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:03.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:03.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:03.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:03.370][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.387][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:03.389][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:03.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.391][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.393][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:03.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:03.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.398][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:03.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:03.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.402][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:03.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:03.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:03.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:03.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.412][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:03.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:03.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.419][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.421][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.423][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.431][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:03.432][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:03.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.435][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.436][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:03.437][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.440][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.441][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:03.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.448][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.449][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.453][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.463][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:03.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:03.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.468][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:03.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:03.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.476][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:03.477][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:03.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.479][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.482][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:03.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:03.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.487][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:03.488][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:03.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.491][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:03.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:03.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:03.557][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-06-17 01:09:03.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:03.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:03.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:03.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:03.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:03.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:03.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:03.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:03.589][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-06-17 01:09:03.590][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:03.592][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-06-17 01:09:03.595][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:03.609][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2024-06-17 01:09:03.610][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:03.612][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:03.614][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:03.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:03.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:03.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:03.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:03.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:03.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:03.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:03.634][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.635][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.645][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:03.647][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:03.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.649][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:03.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:03.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.662][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:03.664][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:03.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.667][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:03.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.674][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:03.675][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:03.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.678][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:03.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:03.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.685][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.686][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.696][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:03.697][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:03.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.701][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:03.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.705][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.707][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:03.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.712][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.714][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.716][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.723][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:03.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:03.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:03.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:03.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.734][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:03.735][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:03.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.738][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:03.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:03.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.747][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:03.749][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:03.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.751][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:03.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:03.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:03.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:03.821][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-06-17 01:09:03.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:03.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:03.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:03.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:03.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:03.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:03.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:03.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:03.859][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-06-17 01:09:03.860][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:03.862][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-06-17 01:09:03.864][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:03.879][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2024-06-17 01:09:03.881][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:03.884][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:03.886][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:03.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:03.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:03.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:03.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:03.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:03.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:03.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:03.907][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.909][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.911][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:03.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:03.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.918][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:03.920][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:03.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.924][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:03.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:03.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.931][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:03.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:03.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.935][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:03.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:03.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:03.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:03.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:03.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:03.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.962][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.964][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:03.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.971][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:03.972][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:03.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.976][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:03.978][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.980][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.981][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:03.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:03.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.987][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.988][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.990][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:03.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:03.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:03.997][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:03.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:03.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:04.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:04.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.007][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:04.009][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:04.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.011][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.013][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:04.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:04.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.018][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:04.019][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:04.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:04.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:04.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:04.085][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-06-17 01:09:04.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:04.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:04.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:04.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:04.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:04.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:04.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:04.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:04.117][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-06-17 01:09:04.118][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:04.120][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-06-17 01:09:04.123][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:04.135][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2024-06-17 01:09:04.137][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:04.138][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:04.140][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:04.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:04.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:04.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:04.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:04.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:04.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:04.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:04.162][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.174][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:04.175][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:04.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.177][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.179][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:04.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:04.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.184][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:04.185][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:04.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.188][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:04.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:04.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.195][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:04.197][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:04.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.199][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:04.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:04.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.205][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:04.207][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:04.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.209][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:04.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:04.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.222][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:04.224][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:04.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.228][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:04.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.232][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.233][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:04.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:04.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:04.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.242][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:04.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:04.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.249][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:04.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:04.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.253][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:04.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:04.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.260][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:04.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:04.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:04.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:04.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:04.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:04.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:04.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:04.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:04.341][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-06-17 01:09:04.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:04.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:04.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:04.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:04.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:04.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:04.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:04.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:04.390][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-06-17 01:09:04.391][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:04.393][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-06-17 01:09:04.395][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:04.411][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2024-06-17 01:09:04.413][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:04.416][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:04.418][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:04.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:04.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:04.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:04.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:04.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:04.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:04.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:04.439][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.442][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.458][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:04.460][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:04.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.464][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:04.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:04.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.470][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:04.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:04.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.475][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:04.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:04.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:04.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:04.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.488][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:04.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:04.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.496][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:04.498][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:04.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.502][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:04.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:04.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.512][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:04.513][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:04.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.516][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.518][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:04.520][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.529][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.532][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:04.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.540][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:04.541][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:04.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.544][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:04.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:04.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.551][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:04.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:04.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.555][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:04.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:04.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.567][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:04.569][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:04.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:04.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:04.582][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:04.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.585][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:04.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:04.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:04.658][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-06-17 01:09:04.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:04.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:04.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:04.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:04.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:04.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:04.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:04.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:04.701][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-06-17 01:09:04.702][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:04.704][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-06-17 01:09:04.707][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:04.725][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2024-06-17 01:09:04.728][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:04.731][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:04.733][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:04.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:04.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:04.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:04.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:04.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:04.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:04.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:04.763][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.769][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.778][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:04.779][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:04.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.783][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:04.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:04.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.793][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:04.796][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:04.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.799][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:04.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:04.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:04.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:04.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.816][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:04.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:04.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.827][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:04.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:04.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.833][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:04.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:04.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.844][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:04.846][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:04.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.850][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.852][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:04.854][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.860][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:04.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:04.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:04.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:04.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:04.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:04.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.896][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:04.898][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:04.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.902][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:04.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:04.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.913][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:04.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:04.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.920][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.922][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:04.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:04.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.931][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:04.933][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:04.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.937][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.939][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:04.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:04.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:04.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:04.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:04.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:04.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:04.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:05.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:05.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:05.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:05.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:05.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:05.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.023][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-06-17 01:09:05.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.080][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:05.084][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:05.086][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-17 01:09:05.088][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:05.090][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-17 01:09:05.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:05.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:05.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:05.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:05.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:05.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:05.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:05.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:05.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:05.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:05.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:05.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:06.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:06.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:06.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:06.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:06.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:06.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:06.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:06.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:06.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:06.108][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:06.113][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:06.115][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2024-06-17 01:09:06.118][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:06.131][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2024-06-17 01:09:06.135][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:06.140][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:06.143][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2024-06-17 01:09:06.145][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:06.159][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2024-06-17 01:09:06.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:06.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:06.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:06.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:06.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:06.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:06.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:06.179][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-06-17 01:09:06.180][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:06.182][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-06-17 01:09:06.184][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:06.202][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2024-06-17 01:09:06.205][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:06.208][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:06.210][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:06.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:06.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:06.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:06.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:06.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:06.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:06.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:06.236][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.239][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.246][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:06.248][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:06.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.251][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.252][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:06.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:06.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.258][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:06.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:06.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.261][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:06.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:06.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:06.270][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:06.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.272][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:06.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.287][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:06.289][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:06.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.292][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:06.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:06.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.303][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:06.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:06.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.309][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.311][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:06.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:06.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.319][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:06.321][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:06.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.325][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.326][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:06.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:06.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.333][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.336][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.346][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:06.348][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:06.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.352][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:06.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:06.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.363][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:06.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:06.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.368][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.371][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:06.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:06.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.379][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:06.381][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:06.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.385][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:06.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:06.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:06.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:06.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:06.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:06.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:06.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:06.485][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-06-17 01:09:06.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:06.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:06.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:06.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:06.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:06.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:06.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:06.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:06.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:06.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:06.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:06.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:06.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:06.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:06.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:06.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:06.551][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-06-17 01:09:06.553][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:06.555][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-06-17 01:09:06.557][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:06.569][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2024-06-17 01:09:06.571][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:06.572][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:06.574][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:06.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:06.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:06.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:06.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:06.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:06.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:06.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:06.592][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.596][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.603][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:06.604][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:06.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.806][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:06.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:06.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.818][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:06.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:06.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:06.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:06.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.835][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:06.837][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:06.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:06.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:06.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:06.853][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:06.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.857][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:06.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:06.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.866][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:06.868][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:06.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.872][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:06.874][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:06.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.876][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.878][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:06.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:06.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.883][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.887][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.899][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:06.900][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:06.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.903][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:06.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:06.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.912][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:06.914][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:06.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.916][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.918][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:06.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:06.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.923][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:06.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:06.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.927][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:06.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:06.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:06.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:06.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:06.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:06.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:06.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:06.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:06.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:06.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:06.988][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-06-17 01:09:06.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:06.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:06.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:06.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.046][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:07.053][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:07.056][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-17 01:09:07.058][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:07.061][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-17 01:09:07.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.916][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:07.920][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:07.922][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-17 01:09:07.924][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:07.926][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-17 01:09:07.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:07.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:07.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:07.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:07.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:07.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:07.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:07.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:07.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:07.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:07.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:07.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:08.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.704][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-17 01:09:08.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-17 01:09:08.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-17 01:09:08.732][biodb::testThat]
biodb.INFO [2024-06-17 01:09:08.734][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-06-17 01:09:08.736][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:09:08.738][biodb::testThat]
biodb.TRACE[2024-06-17 01:09:08.744][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-17 01:09:08.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-17 01:09:08.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:08.815][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:08.819][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:08.821][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-17 01:09:08.822][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:08.825][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-17 01:09:08.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.863][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:08.867][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:08.868][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-17 01:09:08.871][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:08.873][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-17 01:09:08.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:08.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:08.956][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-17 01:09:08.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:08.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:08.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:08.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:08.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:08.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:08.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:08.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:08.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:08.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:08.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:08.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:08.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:08.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:08.999][private$selectFields]
biodb.TRACE[2024-06-17 01:09:09.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:09.002][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:09.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.006][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.010][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.017][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.019][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.027][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:09.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.058][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-06-17 01:09:09.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:09.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:09.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:09.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:09.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:09.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:09.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:09.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.095][private$selectFields]
biodb.TRACE[2024-06-17 01:09:09.097][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:09.099][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:09.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.108][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.114][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.116][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.118][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.126][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:09.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.144][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-17 01:09:09.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:09.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:09.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:09.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:09.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:09.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:09.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:09.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.180][private$selectFields]
biodb.TRACE[2024-06-17 01:09:09.182][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:09.183][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:09.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.201][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.206][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.208][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.214][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.215][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:09.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.233][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-06-17 01:09:09.234][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-17 01:09:09.235][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-17 01:09:09.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:09.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:09.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:09.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:09.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:09.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:09.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:09.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:09.371][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:09.377][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:09.380][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-06-17 01:09:09.383][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:09.387][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-06-17 01:09:09.393][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:09.399][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:09.402][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-06-17 01:09:09.404][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:09.408][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-06-17 01:09:09.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:09.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:09.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:09.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:09.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:09.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:09.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:09.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:09.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:09.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:09.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:09.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:09.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:09.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:09.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:09.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:09.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:09.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:09.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:09.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:09.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:09.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:09.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:09.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:09.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:09.567][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-17 01:09:09.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:09.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:09.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:09.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:09.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:09.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:09.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:09.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.645][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.647][private$selectFields]
biodb.TRACE[2024-06-17 01:09:09.649][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:09.651][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:09.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.674][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.682][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.684][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:09.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.712][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-06-17 01:09:09.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:09.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:09.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:09.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:09.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:09.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:09.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:09.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.806][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.808][private$selectFields]
biodb.TRACE[2024-06-17 01:09:09.811][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:09.812][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:09.814][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.822][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.832][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.849][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.853][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.857][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.859][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:09.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.886][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-17 01:09:09.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:09.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:09.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:09.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:09.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:09.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:09.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:09.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.930][private$selectFields]
biodb.TRACE[2024-06-17 01:09:09.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:09.934][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:09.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.940][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.956][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:09.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.964][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.966][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:09.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:09.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:09.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:09.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-06-17 01:09:09.997][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-17 01:09:09.998][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-17 01:09:10.016][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-17 01:09:10.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-17 01:09:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-17 01:09:10.033][biodb::testThat]
biodb.INFO [2024-06-17 01:09:10.035][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-06-17 01:09:10.037][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:09:10.039][biodb::testThat]
biodb.TRACE[2024-06-17 01:09:10.043][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-17 01:09:10.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-17 01:09:10.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:10.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:10.092][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:10.095][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:10.097][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-17 01:09:10.099][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:10.101][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-17 01:09:10.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:10.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:10.135][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:10.139][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:10.141][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-17 01:09:10.143][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:10.145][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-17 01:09:10.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:10.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:10.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:10.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:10.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:10.215][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-17 01:09:10.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:10.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.244][private$selectFields]
biodb.TRACE[2024-06-17 01:09:10.245][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:10.246][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:10.247][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.253][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.255][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.258][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.259][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.261][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.266][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.267][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:10.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.287][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-06-17 01:09:10.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:10.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.321][private$selectFields]
biodb.TRACE[2024-06-17 01:09:10.322][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:10.324][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:10.325][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.328][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.330][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.335][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.338][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.345][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:10.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.364][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-17 01:09:10.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:10.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.409][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.411][private$selectFields]
biodb.TRACE[2024-06-17 01:09:10.413][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:10.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:10.417][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.419][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.424][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.434][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.436][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.446][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:10.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.468][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-06-17 01:09:10.469][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-17 01:09:10.471][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-17 01:09:10.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:10.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:10.545][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:10.551][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:10.554][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-06-17 01:09:10.557][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:10.561][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-06-17 01:09:10.567][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:10.573][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:10.576][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-06-17 01:09:10.578][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:10.582][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-06-17 01:09:10.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:10.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:10.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:10.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:10.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:10.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:10.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:10.729][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-17 01:09:10.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:10.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.770][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.772][private$selectFields]
biodb.TRACE[2024-06-17 01:09:10.774][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:10.775][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:10.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.785][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.792][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.796][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.805][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:10.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-06-17 01:09:10.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:10.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.871][private$selectFields]
biodb.TRACE[2024-06-17 01:09:10.873][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:10.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:10.877][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.893][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.895][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.897][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.906][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.908][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:10.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-17 01:09:10.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:10.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:10.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:10.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:10.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:10.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:10.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:10.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:10.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:10.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.980][private$selectFields]
biodb.TRACE[2024-06-17 01:09:10.981][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:10.983][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:10.985][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:10.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:10.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.006][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.013][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.023][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:11.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.047][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-06-17 01:09:11.048][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-17 01:09:11.050][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-17 01:09:11.066][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-17 01:09:11.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-17 01:09:11.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-17 01:09:11.081][biodb::testThat]
biodb.INFO [2024-06-17 01:09:11.084][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-06-17 01:09:11.086][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:09:11.087][biodb::testThat]
biodb.TRACE[2024-06-17 01:09:11.093][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-17 01:09:11.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-17 01:09:11.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:11.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:11.166][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:11.171][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:11.174][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-17 01:09:11.177][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:11.180][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-17 01:09:11.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:11.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:11.234][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:11.240][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:11.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-17 01:09:11.245][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:11.248][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-17 01:09:11.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:11.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:11.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:11.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:11.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:11.349][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-17 01:09:11.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:11.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.389][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.391][private$selectFields]
biodb.TRACE[2024-06-17 01:09:11.393][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:11.395][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:11.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.403][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.409][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.410][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.415][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.417][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:11.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.435][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-06-17 01:09:11.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:11.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.466][private$selectFields]
biodb.TRACE[2024-06-17 01:09:11.467][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:11.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:11.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.477][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.488][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.495][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:11.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-17 01:09:11.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:11.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.549][private$selectFields]
biodb.TRACE[2024-06-17 01:09:11.551][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:11.552][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:11.554][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.562][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.574][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.581][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:11.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-06-17 01:09:11.600][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-17 01:09:11.601][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-17 01:09:11.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:11.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:11.719][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:11.725][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:11.727][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-06-17 01:09:11.730][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:11.733][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-06-17 01:09:11.737][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:11.741][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:11.743][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-06-17 01:09:11.744][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:11.747][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-06-17 01:09:11.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:11.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:11.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:11.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:11.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:11.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:11.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:11.841][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-17 01:09:11.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:11.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.871][private$selectFields]
biodb.TRACE[2024-06-17 01:09:11.872][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:11.873][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:11.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.884][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.886][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.892][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:11.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-06-17 01:09:11.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:11.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.936][private$selectFields]
biodb.TRACE[2024-06-17 01:09:11.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:11.938][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:11.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.951][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:11.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.956][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.957][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:11.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.974][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-17 01:09:11.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:11.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:11.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:11.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:11.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:11.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:11.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:11.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:11.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:11.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:11.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:12.001][private$selectFields]
biodb.TRACE[2024-06-17 01:09:12.002][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-17 01:09:12.004][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-17 01:09:12.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:12.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.009][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.020][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:12.024][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-17 01:09:12.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.032][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.034][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-17 01:09:12.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.060][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-06-17 01:09:12.062][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-17 01:09:12.064][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-17 01:09:12.103][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-17 01:09:12.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-17 01:09:12.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-17 01:09:12.114][biodb::testThat]
biodb.INFO [2024-06-17 01:09:12.116][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-06-17 01:09:12.117][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:09:12.118][biodb::testThat]
biodb.DEBUG[2024-06-17 01:09:12.120][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-06-17 01:09:12.122][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:12.123][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-06-17 01:09:12.126][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:12.141][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2024-06-17 01:09:12.142][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:12.144][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:12.146][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:12.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:12.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:12.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:12.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:12.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:12.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:12.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:12.164][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.174][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:12.175][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:12.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.179][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:12.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:12.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:12.186][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:12.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.188][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.190][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:12.191][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:12.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:12.196][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:12.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.208][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.211][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:12.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:12.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.216][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:12.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:12.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.221][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.222][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:12.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:12.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.228][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:12.229][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:12.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.231][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.233][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:12.234][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:12.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.236][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:12.288][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2024-06-17 01:09:12.289][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-06-17 01:09:12.305][biodb::testThat]
biodb.INFO [2024-06-17 01:09:12.307][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-06-17 01:09:12.309][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:09:12.311][biodb::testThat]
biodb.DEBUG[2024-06-17 01:09:12.339][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2024-06-17 01:09:12.341][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2024-06-17 01:09:12.343][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-17 01:09:12.345][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2024-06-17 01:09:12.347][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-06-17 01:09:12.391][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-06-17 01:09:12.394][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:12.396][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-06-17 01:09:12.399][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:12.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:12.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:12.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:12.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:12.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:12.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:12.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:12.427][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.433][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.445][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:12.447][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:12.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.451][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:12.452][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:12.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.455][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.457][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:12.458][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:12.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.460][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.462][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:12.463][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:12.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.465][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.467][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:12.468][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:12.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.471][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.472][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:12.474][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:12.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.476][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.477][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:12.479][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:12.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.481][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.483][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:12.484][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:12.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.486][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.488][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:12.489][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:12.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.492][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.493][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:12.495][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:12.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.497][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:12.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:12.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:12.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:12.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:12.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:12.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:12.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:12.554][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.558][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.565][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:12.566][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:12.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.570][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:12.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:12.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.575][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:12.577][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:12.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:12.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:12.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.586][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:12.587][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:12.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.590][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:12.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:12.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.596][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:12.598][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:12.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.600][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:12.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:12.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:12.608][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:12.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.611][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.612][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:12.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:12.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.617][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:12.619][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:12.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.621][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.623][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:12.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:12.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.628][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:12.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:12.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.632][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:12.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:12.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.640][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:12.642][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:12.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:12.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:12.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.655][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:12.656][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:12.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.658][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.660][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:12.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:12.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.666][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:12.668][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:12.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.672][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:12.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:12.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:12.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:12.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:12.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:12.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:12.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:12.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:12.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:12.752][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.758][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.765][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:12.768][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:12.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.774][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:12.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:12.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.782][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:12.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:12.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:12.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:12.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:12.809][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:12.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.813][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:12.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:12.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:12.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:12.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.833][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:12.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:12.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.845][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:12.847][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:12.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.851][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:12.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:12.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.862][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:12.864][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:12.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.868][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.870][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:12.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:12.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:12.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:12.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:12.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:12.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.895][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:12.898][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:12.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:12.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:12.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.913][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:12.915][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:12.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.919][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.921][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:12.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:12.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.930][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:12.932][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:12.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.935][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:12.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:12.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:12.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:12.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:12.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:12.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:12.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:13.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:13.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:13.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:13.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:13.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:13.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:13.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:13.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:13.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:13.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:13.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:13.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:13.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:13.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:13.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:13.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:13.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:13.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:13.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:13.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:13.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:13.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:13.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:13.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:13.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:13.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:13.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:13.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:13.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:13.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:13.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:13.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:13.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:13.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:13.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:13.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:13.074][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2024-06-17 01:09:13.076][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-06-17 01:09:13.078][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2024-06-17 01:09:13.111][biodb::testThat]
biodb.INFO [2024-06-17 01:09:13.113][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-06-17 01:09:13.115][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:09:13.117][biodb::testThat]
biodb.INFO [2024-06-17 01:09:13.166][biodb::testThat]
biodb.INFO [2024-06-17 01:09:13.169][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-06-17 01:09:13.171][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:09:13.173][biodb::testThat]
biodb.INFO [2024-06-17 01:09:13.196][biodb::testThat]
biodb.INFO [2024-06-17 01:09:13.198][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-06-17 01:09:13.200][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:09:13.202][biodb::testThat]
biodb.DEBUG[2024-06-17 01:09:13.207][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:13.213][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:13.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2024-06-17 01:09:13.217][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:13.235][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2024-06-17 01:09:13.262][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:13.265][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:13.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:13.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:13.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:13.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:13.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:13.276][ef$get] fields variable is a list.
biodb.INFO [2024-06-17 01:09:13.280][biodb::testThat]
biodb.INFO [2024-06-17 01:09:13.281][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2024-06-17 01:09:13.283][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:09:13.284][biodb::testThat]
biodb.ERROR[2024-06-17 01:09:13.302][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2024-06-17 01:09:13.320][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2024-06-17 01:09:13.345][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-17 01:09:13.347][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-06-17 01:09:13.348][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-06-17 01:09:13.349][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-17 01:09:13.351][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:13.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:13.353][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.355][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-17 01:09:13.367][biodb::testContext]
biodb.INFO [2024-06-17 01:09:13.369][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-17 01:09:13.370][biodb::testContext] Test context - Test conversions
biodb.INFO [2024-06-17 01:09:13.371][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-17 01:09:13.372][biodb::testContext]
biodb.INFO [2024-06-17 01:09:13.376][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-17 01:09:13.379][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-17 01:09:13.384][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-17 01:09:13.386][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-17 01:09:13.388][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-17 01:09:13.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.393][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-17 01:09:13.396][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-17 01:09:13.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.403][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-17 01:09:13.405][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-17 01:09:13.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.411][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-17 01:09:13.412][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-17 01:09:13.413][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-17 01:09:13.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.418][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-17 01:09:13.420][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-17 01:09:13.421][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-17 01:09:13.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.428][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-17 01:09:13.430][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-17 01:09:13.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.438][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-17 01:09:13.440][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-17 01:09:13.442][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-17 01:09:13.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.450][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-17 01:09:13.452][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-17 01:09:13.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.459][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-17 01:09:13.461][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-17 01:09:13.463][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-17 01:09:13.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.470][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-17 01:09:13.482][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-17 01:09:13.484][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-17 01:09:13.486][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-17 01:09:13.489][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-17 01:09:13.491][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-17 01:09:13.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.499][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-17 01:09:13.501][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-17 01:09:13.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.509][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-17 01:09:13.511][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-17 01:09:13.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.519][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-17 01:09:13.521][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-17 01:09:13.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.526][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-17 01:09:13.528][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-17 01:09:13.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.532][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-17 01:09:13.533][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-17 01:09:13.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.538][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-17 01:09:13.539][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-17 01:09:13.544][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-17 01:09:13.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.552][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-17 01:09:13.554][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-17 01:09:13.556][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-17 01:09:13.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.564][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-17 01:09:13.567][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:13.570][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-17 01:09:13.572][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.574][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:13.576][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.578][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:13.580][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:13.582][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:09:13.584][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-17 01:09:13.586][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:13.588][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.590][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-17 01:09:13.592][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:13.594][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.596][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.598][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-17 01:09:13.598][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-17 01:09:13.598][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-17 01:09:13.598][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-17 01:09:13.598][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-17 01:09:13.600][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:09:13.602][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:13.604][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:13.606][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:13.608][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:13.610][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:13.612][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:13.614][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.616][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:13.619][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:13.621][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:13.623][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.625][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-17 01:09:13.628][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:13.630][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-17 01:09:13.632][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.634][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:13.636][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.638][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:13.640][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:13.642][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:09:13.644][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-17 01:09:13.646][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:13.649][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.651][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-17 01:09:13.653][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:13.655][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.657][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.659][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-17 01:09:13.659][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-17 01:09:13.659][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-17 01:09:13.659][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-17 01:09:13.659][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-17 01:09:13.661][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:09:13.663][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:13.665][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:13.667][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:13.669][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:13.671][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:13.673][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:13.675][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.677][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:13.679][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:13.681][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:13.683][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.685][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-17 01:09:13.689][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.691][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-17 01:09:13.693][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.695][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:13.698][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.700][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:13.702][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:13.704][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:09:13.706][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-17 01:09:13.708][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:13.710][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:13.712][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-17 01:09:13.714][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:13.716][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.719][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.721][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.723][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:09:13.725][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:13.726][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:13.729][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:13.731][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:13.732][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:13.735][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:13.737][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.739][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:13.744][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:13.747][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:13.749][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.751][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-17 01:09:13.754][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.756][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-17 01:09:13.758][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.760][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:13.762][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.764][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:13.766][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:13.769][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:09:13.771][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-17 01:09:13.772][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:13.774][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:13.775][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-17 01:09:13.777][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:13.778][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.779][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:13.781][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.782][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:09:13.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:13.784][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:13.785][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:13.787][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:13.788][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:13.789][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:13.790][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.792][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:13.793][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:13.794][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:13.796][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:13.799][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-17 01:09:13.800][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:13.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:13.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:13.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:13.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:13.908][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-17 01:09:13.910][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-17 01:09:13.912][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-17 01:09:13.913][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-17 01:09:13.915][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-17 01:09:13.917][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-17 01:09:13.918][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-17 01:09:13.920][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-17 01:09:13.922][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-17 01:09:13.924][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-17 01:09:13.925][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-17 01:09:13.927][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-17 01:09:13.929][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-17 01:09:13.931][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-17 01:09:13.933][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-17 01:09:13.936][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-17 01:09:13.938][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-17 01:09:13.941][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-17 01:09:13.944][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-17 01:09:13.947][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-17 01:09:13.949][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-17 01:09:13.952][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-17 01:09:13.955][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-17 01:09:13.958][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-17 01:09:13.960][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-17 01:09:13.963][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-17 01:09:13.966][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-17 01:09:13.969][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-17 01:09:13.972][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-17 01:09:13.975][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-17 01:09:13.977][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-17 01:09:13.980][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-17 01:09:13.983][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-17 01:09:13.986][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-17 01:09:13.988][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-17 01:09:13.991][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-17 01:09:13.994][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-17 01:09:13.997][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-17 01:09:13.999][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-17 01:09:14.002][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-17 01:09:14.005][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-17 01:09:14.007][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-17 01:09:14.010][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-17 01:09:14.013][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-17 01:09:14.016][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-17 01:09:14.018][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-17 01:09:14.021][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-17 01:09:14.024][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-17 01:09:14.027][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-17 01:09:14.030][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-17 01:09:14.033][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-17 01:09:14.036][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-17 01:09:14.039][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-17 01:09:14.041][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-17 01:09:14.044][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-17 01:09:14.047][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-17 01:09:14.050][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-17 01:09:14.054][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-17 01:09:14.056][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-17 01:09:14.061][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-17 01:09:14.066][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-17 01:09:14.069][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-17 01:09:14.074][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-17 01:09:14.077][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-17 01:09:14.080][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-17 01:09:14.095][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-17 01:09:14.098][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-17 01:09:14.101][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-17 01:09:14.104][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-17 01:09:14.107][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-17 01:09:14.110][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-17 01:09:14.113][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-17 01:09:14.115][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-17 01:09:14.118][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-17 01:09:14.121][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-17 01:09:14.124][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-17 01:09:14.126][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-17 01:09:14.129][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-17 01:09:14.131][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-17 01:09:14.134][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-17 01:09:14.136][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-17 01:09:14.138][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-17 01:09:14.141][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-17 01:09:14.143][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-17 01:09:14.146][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-17 01:09:14.147][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-17 01:09:14.148][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.150][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.325][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-06-17 01:09:14.327][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-06-17 01:09:14.329][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:14.330][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-17 01:09:14.332][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:14.333][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:14.334][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:14.335][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:14.337][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:14.339][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-06-17 01:09:14.340][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-17 01:09:14.341][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:14.343][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:14.344][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-06-17 01:09:14.345][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:14.347][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-06-17 01:09:14.347][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-06-17 01:09:14.347][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-06-17 01:09:14.347][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-06-17 01:09:14.347][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-06-17 01:09:14.347][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-06-17 01:09:14.347][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-06-17 01:09:14.347][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-06-17 01:09:14.347][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-06-17 01:09:14.347][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-06-17 01:09:14.347][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-06-17 01:09:14.349][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:14.350][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-17 01:09:14.350][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-17 01:09:14.350][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-17 01:09:14.351][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-17 01:09:14.352][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:14.353][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:14.355][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:14.356][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:14.357][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:14.358][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:14.360][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-17 01:09:14.360][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-06-17 01:09:14.361][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:14.362][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:14.363][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:14.364][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-06-17 01:09:14.364][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-06-17 01:09:14.366][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-17 01:09:14.368][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-17 01:09:14.370][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-06-17 01:09:14.371][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-17 01:09:14.373][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-17 01:09:14.375][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-17 01:09:14.379][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-06-17 01:09:14.380][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-06-17 01:09:14.381][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-06-17 01:09:14.383][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-06-17 01:09:14.385][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-17 01:09:14.386][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-17 01:09:14.388][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-06-17 01:09:14.389][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-06-17 01:09:14.391][biodb::testThat]
biodb.INFO [2024-06-17 01:09:14.392][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2024-06-17 01:09:14.393][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:09:14.394][biodb::testThat]
biodb.DEBUG[2024-06-17 01:09:14.399][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-06-17 01:09:14.405][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:14.408][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-06-17 01:09:14.410][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:14.414][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-06-17 01:09:14.421][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:14.427][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:14.430][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-06-17 01:09:14.433][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:14.449][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-06-17 01:09:14.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:14.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.469][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:14.473][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:14.475][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-06-17 01:09:14.477][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:14.490][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-06-17 01:09:14.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:14.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:14.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.564][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:14.568][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:14.571][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-06-17 01:09:14.573][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:14.577][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-06-17 01:09:14.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:14.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.598][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:14.602][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:14.604][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-06-17 01:09:14.605][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:14.608][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-06-17 01:09:14.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:14.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:14.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.642][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:14.645][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:14.647][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-06-17 01:09:14.649][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:14.651][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-06-17 01:09:14.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:14.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.675][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:14.678][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:14.680][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-06-17 01:09:14.681][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:14.684][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-06-17 01:09:14.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:14.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.702][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:14.706][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:14.708][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2024-06-17 01:09:14.710][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:14.723][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2024-06-17 01:09:14.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:14.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-17 01:09:14.764][biodb::testThat]
biodb.INFO [2024-06-17 01:09:14.766][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2024-06-17 01:09:14.768][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:09:14.770][biodb::testThat]
biodb.DEBUG[2024-06-17 01:09:14.776][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:14.782][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:14.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2024-06-17 01:09:14.787][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:14.801][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2024-06-17 01:09:14.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:14.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.830][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:14.837][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:14.839][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2024-06-17 01:09:14.842][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:14.847][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2024-06-17 01:09:14.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:14.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-17 01:09:14.872][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-17 01:09:14.873][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-06-17 01:09:14.875][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-06-17 01:09:14.876][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-17 01:09:14.877][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:14.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:14.880][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:14.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:14.882][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-17 01:09:14.889][biodb::testContext]
biodb.INFO [2024-06-17 01:09:14.890][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-17 01:09:14.891][biodb::testContext] Test context - Test web services
biodb.INFO [2024-06-17 01:09:14.893][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-17 01:09:14.894][biodb::testContext]
biodb.INFO [2024-06-17 01:09:14.897][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-17 01:09:14.900][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-17 01:09:14.909][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-17 01:09:14.910][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-17 01:09:14.912][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-17 01:09:14.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.917][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-17 01:09:14.918][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-17 01:09:14.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.923][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-17 01:09:14.925][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-17 01:09:14.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.933][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-17 01:09:14.935][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-17 01:09:14.938][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-17 01:09:14.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.945][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-17 01:09:14.947][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-17 01:09:14.949][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-17 01:09:14.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.956][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-17 01:09:14.959][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-17 01:09:14.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.966][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-17 01:09:14.968][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-17 01:09:14.970][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-17 01:09:14.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.978][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-17 01:09:14.980][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-17 01:09:14.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.987][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-17 01:09:14.989][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-17 01:09:14.991][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-17 01:09:14.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:14.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:14.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:14.999][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-17 01:09:15.001][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-17 01:09:15.003][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-17 01:09:15.005][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-17 01:09:15.007][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-17 01:09:15.009][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-17 01:09:15.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.017][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-17 01:09:15.019][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-17 01:09:15.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.026][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-17 01:09:15.027][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-17 01:09:15.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.032][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-17 01:09:15.033][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-17 01:09:15.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.037][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-17 01:09:15.039][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-17 01:09:15.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.043][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-17 01:09:15.045][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-17 01:09:15.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.049][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-17 01:09:15.050][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-17 01:09:15.061][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-17 01:09:15.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.066][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-17 01:09:15.067][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-17 01:09:15.069][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-17 01:09:15.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.074][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-17 01:09:15.076][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.077][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-17 01:09:15.080][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.081][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:15.083][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.085][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.087][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.089][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.091][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-17 01:09:15.093][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:15.095][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.097][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-17 01:09:15.099][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:15.101][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.103][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.105][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-17 01:09:15.105][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-17 01:09:15.105][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-17 01:09:15.105][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-17 01:09:15.105][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-17 01:09:15.107][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:09:15.109][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:15.111][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:15.112][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:15.114][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:15.116][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:15.118][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.120][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.122][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:15.124][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:15.126][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.128][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.130][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-17 01:09:15.134][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.136][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-17 01:09:15.138][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.140][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:15.142][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.144][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.146][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.148][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.150][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-17 01:09:15.152][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:15.154][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.155][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-17 01:09:15.157][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:15.159][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.161][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.164][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-17 01:09:15.164][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-17 01:09:15.164][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-17 01:09:15.164][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-17 01:09:15.164][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-17 01:09:15.166][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:09:15.168][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:15.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:15.171][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:15.173][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:15.175][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:15.177][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.179][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.181][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:15.183][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:15.185][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.187][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.189][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-17 01:09:15.193][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.195][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-17 01:09:15.197][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.199][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:15.201][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.203][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.204][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.206][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.208][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-17 01:09:15.211][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:15.213][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.215][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-17 01:09:15.217][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:15.219][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.221][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.222][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.224][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:09:15.226][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:15.228][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:15.230][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:15.232][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:15.234][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:15.236][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.238][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.240][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:15.242][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:15.244][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.246][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.248][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-17 01:09:15.251][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.253][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-17 01:09:15.255][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.257][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:15.259][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.261][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.263][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.265][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.267][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-17 01:09:15.269][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:15.271][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.273][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-17 01:09:15.275][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:15.277][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.279][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.281][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.283][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:09:15.285][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:15.287][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:15.289][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:15.291][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:15.293][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:15.295][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.297][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.299][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:15.301][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:15.303][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.305][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:15.308][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-17 01:09:15.309][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.472][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-17 01:09:15.475][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-17 01:09:15.477][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-17 01:09:15.479][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-17 01:09:15.482][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-17 01:09:15.484][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-17 01:09:15.486][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-17 01:09:15.488][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-17 01:09:15.489][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-17 01:09:15.491][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-17 01:09:15.492][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-17 01:09:15.494][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-17 01:09:15.496][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-17 01:09:15.497][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-17 01:09:15.499][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-17 01:09:15.501][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-17 01:09:15.502][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-17 01:09:15.504][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-17 01:09:15.505][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-17 01:09:15.507][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-17 01:09:15.510][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-17 01:09:15.512][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-17 01:09:15.515][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-17 01:09:15.517][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-17 01:09:15.520][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-17 01:09:15.522][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-17 01:09:15.525][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-17 01:09:15.528][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-17 01:09:15.531][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-17 01:09:15.535][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-17 01:09:15.538][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-17 01:09:15.541][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-17 01:09:15.544][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-17 01:09:15.547][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-17 01:09:15.549][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-17 01:09:15.552][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-17 01:09:15.555][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-17 01:09:15.558][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-17 01:09:15.561][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-17 01:09:15.563][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-17 01:09:15.566][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-17 01:09:15.569][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-17 01:09:15.571][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-17 01:09:15.574][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-17 01:09:15.577][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-17 01:09:15.580][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-17 01:09:15.583][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-17 01:09:15.586][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-17 01:09:15.588][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-17 01:09:15.591][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-17 01:09:15.594][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-17 01:09:15.596][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-17 01:09:15.599][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-17 01:09:15.601][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-17 01:09:15.604][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-17 01:09:15.607][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-17 01:09:15.609][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-17 01:09:15.612][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-17 01:09:15.615][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-17 01:09:15.617][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-17 01:09:15.620][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-17 01:09:15.622][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-17 01:09:15.625][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-17 01:09:15.628][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-17 01:09:15.630][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-17 01:09:15.633][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-17 01:09:15.636][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-17 01:09:15.639][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-17 01:09:15.642][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-17 01:09:15.644][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-17 01:09:15.647][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-17 01:09:15.650][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-17 01:09:15.652][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-17 01:09:15.655][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-17 01:09:15.658][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-17 01:09:15.660][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-17 01:09:15.663][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-17 01:09:15.665][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-17 01:09:15.668][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-17 01:09:15.671][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-17 01:09:15.673][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-17 01:09:15.676][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-17 01:09:15.677][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-17 01:09:15.679][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-17 01:09:15.682][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-17 01:09:15.683][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-17 01:09:15.684][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.687][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:15.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:15.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:15.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:15.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:15.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:15.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:15.857][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-06-17 01:09:15.860][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-06-17 01:09:15.864][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.866][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.868][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.870][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:15.872][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.873][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.875][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.876][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-06-17 01:09:15.877][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-17 01:09:15.879][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:15.880][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.882][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-06-17 01:09:15.883][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:15.885][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-06-17 01:09:15.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-06-17 01:09:15.885][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-06-17 01:09:15.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-06-17 01:09:15.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-06-17 01:09:15.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-06-17 01:09:15.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-06-17 01:09:15.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-06-17 01:09:15.885][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-06-17 01:09:15.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-06-17 01:09:15.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-06-17 01:09:15.886][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:15.888][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-17 01:09:15.888][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-17 01:09:15.888][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-17 01:09:15.890][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-17 01:09:15.892][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:15.894][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:15.896][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:15.898][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:15.900][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:15.902][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:15.913][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-17 01:09:15.913][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-06-17 01:09:15.916][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:15.918][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:15.920][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:15.922][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-06-17 01:09:15.922][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-06-17 01:09:15.923][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-17 01:09:15.925][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-17 01:09:15.927][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-06-17 01:09:15.929][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-17 01:09:15.931][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-17 01:09:15.932][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-17 01:09:15.936][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-06-17 01:09:15.937][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-06-17 01:09:15.939][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-06-17 01:09:15.941][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-06-17 01:09:15.943][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-17 01:09:15.944][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-17 01:09:15.946][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-06-17 01:09:15.947][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-06-17 01:09:15.949][biodb::testThat]
biodb.INFO [2024-06-17 01:09:15.951][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2024-06-17 01:09:15.952][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:09:15.953][biodb::testThat]
biodb.DEBUG[2024-06-17 01:09:15.957][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-06-17 01:09:15.962][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:15.964][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-06-17 01:09:15.965][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:15.969][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-06-17 01:09:15.974][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:15.980][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:15.983][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-06-17 01:09:15.985][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:15.998][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2024-06-17 01:09:16.013][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-17 01:09:16.015][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-06-17 01:09:16.016][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-06-17 01:09:16.018][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-17 01:09:16.019][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.021][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.023][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-17 01:09:16.029][biodb::testContext]
biodb.INFO [2024-06-17 01:09:16.031][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-17 01:09:16.032][biodb::testContext] Test context - Non regression tests
biodb.INFO [2024-06-17 01:09:16.033][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-17 01:09:16.034][biodb::testContext]
biodb.INFO [2024-06-17 01:09:16.038][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-17 01:09:16.040][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-17 01:09:16.048][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-17 01:09:16.050][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-17 01:09:16.052][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-17 01:09:16.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.057][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-17 01:09:16.058][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-17 01:09:16.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.063][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-17 01:09:16.065][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-17 01:09:16.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.069][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-17 01:09:16.071][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-17 01:09:16.072][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-17 01:09:16.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.077][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-17 01:09:16.078][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-17 01:09:16.080][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-17 01:09:16.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.085][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-17 01:09:16.086][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-17 01:09:16.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.091][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-17 01:09:16.092][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-17 01:09:16.093][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-17 01:09:16.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.101][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-17 01:09:16.103][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-17 01:09:16.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.110][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-17 01:09:16.113][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-17 01:09:16.115][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-17 01:09:16.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.122][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-17 01:09:16.124][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-17 01:09:16.126][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-17 01:09:16.128][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-17 01:09:16.130][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-17 01:09:16.132][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-17 01:09:16.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.139][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-17 01:09:16.141][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-17 01:09:16.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.149][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-17 01:09:16.150][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-17 01:09:16.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.157][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-17 01:09:16.159][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-17 01:09:16.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.165][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-17 01:09:16.167][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-17 01:09:16.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.173][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-17 01:09:16.175][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-17 01:09:16.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.181][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-17 01:09:16.183][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-17 01:09:16.188][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-17 01:09:16.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.194][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-17 01:09:16.196][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-17 01:09:16.197][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-17 01:09:16.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.202][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-17 01:09:16.204][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:16.205][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-17 01:09:16.206][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.207][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:16.208][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.210][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:16.211][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:16.212][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:09:16.214][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-17 01:09:16.215][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:16.216][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.218][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-17 01:09:16.219][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:16.220][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.221][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.223][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-17 01:09:16.223][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-17 01:09:16.223][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-17 01:09:16.223][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-17 01:09:16.223][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-17 01:09:16.224][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:09:16.225][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:16.226][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:16.227][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:16.229][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:16.230][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:16.236][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:16.238][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.240][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:16.241][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:16.243][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:16.244][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.245][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-17 01:09:16.247][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:16.248][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-17 01:09:16.250][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.251][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:16.252][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.253][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:16.255][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:16.256][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:09:16.257][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-17 01:09:16.258][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:16.260][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.261][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-17 01:09:16.262][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:16.263][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.264][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.266][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-17 01:09:16.266][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-17 01:09:16.266][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-17 01:09:16.266][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-17 01:09:16.266][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-17 01:09:16.267][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:09:16.268][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:16.269][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:16.270][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:16.272][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:16.273][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:16.274][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:16.275][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.276][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:16.277][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:16.279][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:16.280][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.281][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-17 01:09:16.283][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.284][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-17 01:09:16.286][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.287][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:16.288][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.289][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:16.290][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:16.292][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:09:16.293][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-17 01:09:16.294][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:16.296][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:16.297][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-17 01:09:16.299][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:16.301][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.303][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.305][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.308][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:09:16.309][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:16.311][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:16.313][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:16.314][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:16.316][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:16.318][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:16.320][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.322][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:16.324][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:16.325][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:16.327][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.330][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-17 01:09:16.333][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.335][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-17 01:09:16.337][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.339][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:16.341][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.343][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:16.345][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:16.346][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-17 01:09:16.348][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-17 01:09:16.350][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:16.352][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:16.354][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-17 01:09:16.356][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:16.357][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.358][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.360][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.361][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-17 01:09:16.362][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:16.363][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:16.365][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:16.366][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:16.368][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:16.370][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:16.372][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.374][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:16.376][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:16.378][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:16.380][self$setPropertyValue]
biodb.DEBUG[2024-06-17 01:09:16.382][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-17 01:09:16.383][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.524][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-17 01:09:16.526][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-17 01:09:16.529][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-17 01:09:16.531][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-17 01:09:16.533][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-17 01:09:16.535][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-17 01:09:16.538][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-17 01:09:16.541][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-17 01:09:16.543][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-17 01:09:16.546][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-17 01:09:16.549][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-17 01:09:16.552][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-17 01:09:16.555][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-17 01:09:16.557][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-17 01:09:16.560][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-17 01:09:16.563][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-17 01:09:16.566][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-17 01:09:16.569][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-17 01:09:16.571][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-17 01:09:16.574][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-17 01:09:16.577][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-17 01:09:16.580][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-17 01:09:16.582][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-17 01:09:16.585][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-17 01:09:16.588][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-17 01:09:16.591][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-17 01:09:16.593][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-17 01:09:16.596][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-17 01:09:16.599][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-17 01:09:16.602][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-17 01:09:16.604][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-17 01:09:16.607][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-17 01:09:16.610][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-17 01:09:16.613][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-17 01:09:16.615][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-17 01:09:16.618][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-17 01:09:16.621][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-17 01:09:16.623][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-17 01:09:16.626][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-17 01:09:16.628][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-17 01:09:16.631][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-17 01:09:16.633][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-17 01:09:16.636][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-17 01:09:16.639][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-17 01:09:16.641][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-17 01:09:16.644][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-17 01:09:16.647][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-17 01:09:16.650][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-17 01:09:16.653][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-17 01:09:16.655][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-17 01:09:16.658][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-17 01:09:16.660][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-17 01:09:16.663][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-17 01:09:16.666][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-17 01:09:16.668][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-17 01:09:16.671][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-17 01:09:16.675][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-17 01:09:16.678][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-17 01:09:16.681][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-17 01:09:16.683][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-17 01:09:16.686][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-17 01:09:16.689][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-17 01:09:16.691][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-17 01:09:16.694][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-17 01:09:16.697][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-17 01:09:16.699][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-17 01:09:16.702][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-17 01:09:16.705][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-17 01:09:16.707][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-17 01:09:16.710][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-17 01:09:16.712][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-17 01:09:16.715][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-17 01:09:16.717][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-17 01:09:16.720][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-17 01:09:16.722][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-17 01:09:16.725][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-17 01:09:16.727][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-17 01:09:16.730][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-17 01:09:16.733][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-17 01:09:16.735][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-17 01:09:16.738][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-17 01:09:16.740][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-17 01:09:16.743][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-17 01:09:16.745][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-17 01:09:16.749][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-17 01:09:16.751][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-17 01:09:16.753][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.757][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-17 01:09:16.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:16.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:16.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:16.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:16.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:16.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-17 01:09:16.984][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-06-17 01:09:16.987][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-06-17 01:09:16.991][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:16.993][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-17 01:09:16.995][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:16.997][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-17 01:09:16.999][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:17.001][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-17 01:09:17.003][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:17.005][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-06-17 01:09:17.008][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-17 01:09:17.010][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-17 01:09:17.012][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:17.014][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-06-17 01:09:17.016][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-17 01:09:17.018][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-06-17 01:09:17.018][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-06-17 01:09:17.018][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-06-17 01:09:17.018][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-06-17 01:09:17.018][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-06-17 01:09:17.018][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-06-17 01:09:17.018][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-06-17 01:09:17.018][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-06-17 01:09:17.018][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-06-17 01:09:17.018][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-06-17 01:09:17.018][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-06-17 01:09:17.020][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-17 01:09:17.022][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-17 01:09:17.022][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-17 01:09:17.022][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-17 01:09:17.024][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-17 01:09:17.026][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:17.028][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:17.030][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-17 01:09:17.032][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-17 01:09:17.033][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-17 01:09:17.035][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-17 01:09:17.037][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-17 01:09:17.037][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-06-17 01:09:17.039][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-17 01:09:17.041][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-17 01:09:17.043][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-17 01:09:17.045][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-06-17 01:09:17.045][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-06-17 01:09:17.047][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-17 01:09:17.050][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-17 01:09:17.053][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-06-17 01:09:17.056][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-17 01:09:17.059][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-17 01:09:17.062][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-17 01:09:17.068][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-06-17 01:09:17.070][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-06-17 01:09:17.072][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-06-17 01:09:17.076][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-06-17 01:09:17.078][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-17 01:09:17.080][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-17 01:09:17.083][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-06-17 01:09:17.085][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-06-17 01:09:17.088][biodb::testThat]
biodb.INFO [2024-06-17 01:09:17.090][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2024-06-17 01:09:17.092][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-17 01:09:17.094][biodb::testThat]
biodb.DEBUG[2024-06-17 01:09:17.099][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-06-17 01:09:17.107][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:17.119][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-06-17 01:09:17.121][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:17.125][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-06-17 01:09:17.129][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-17 01:09:17.133][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-17 01:09:17.134][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-06-17 01:09:17.136][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:17.139][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2024-06-17 01:09:17.144][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2024-06-17 01:09:17.145][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-17 01:09:17.147][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2024-06-17 01:09:17.150][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-17 01:09:17.173][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2024-06-17 01:09:17.176][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-17 01:09:17.179][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-17 01:09:17.181][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-17 01:09:17.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-17 01:09:17.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:17.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:17.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:17.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:17.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:17.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-17 01:09:17.213][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:17.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:17.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:17.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:17.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.225][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:17.226][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:17.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-17 01:09:17.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-17 01:09:17.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.236][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:17.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:17.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.242][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-17 01:09:17.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-17 01:09:17.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.251][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-17 01:09:17.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-17 01:09:17.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.257][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-17 01:09:17.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-17 01:09:17.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.260][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.263][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:17.265][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:17.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.268][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.271][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:17.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-17 01:09:17.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.280][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:17.282][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:17.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.286][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.288][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-17 01:09:17.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-17 01:09:17.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.297][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:17.299][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:17.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:17.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-17 01:09:17.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.312][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:17.313][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:17.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.316][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-17 01:09:17.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-17 01:09:17.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.324][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:17.325][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:17.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.330][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-17 01:09:17.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-17 01:09:17.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.337][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:17.339][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:17.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-17 01:09:17.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-17 01:09:17.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:17.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:17.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:17.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:17.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:17.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:17.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-17 01:09:17.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-17 01:09:17.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:17.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:17.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:17.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:17.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:17.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:17.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:17.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:17.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:17.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:17.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-17 01:09:17.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-17 01:09:17.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-17 01:09:17.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-17 01:09:17.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-17 01:09:17.419][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2024-06-17 01:09:17.429][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-17 01:09:17.431][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-06-17 01:09:17.434][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-06-17 01:09:17.435][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-17 01:09:17.437][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-17 01:09:17.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-17 01:09:17.441][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-17 01:09:17.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-17 01:09:17.445][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-17 01:09:17.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 358 ]
>
> proc.time()
user system elapsed
22.51 1.76 26.95
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 3.83 | 3.28 | 123.84 | |
| ChebiEntry | 0.69 | 0.00 | 0.70 | |