Pierrick Roger
| Snapshot Date: 2024-05-08 14:00:19 -0400 (Wed, 08 May 2024) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_19 |
| git_last_commit: a7f41b2 |
| git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-09 11:40:36 -0400 (Thu, 09 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4748 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4484 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4514 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 202/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.10.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | ERROR | OK | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: biodbHmdb |
| Version: 1.10.0 |
| Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz |
| StartedAt: 2024-05-09 05:16:14 -0000 (Thu, 09 May 2024) |
| EndedAt: 2024-05-09 05:19:19 -0000 (Thu, 09 May 2024) |
| EllapsedTime: 185.5 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.0 beta (2024-04-15 r86425)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (GCC) 10.3.1’
* checking installed package size ... NOTE
installed size is 9.2Mb
sub-directories of 1Mb or more:
libs 8.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 3 NOTEs
See
‘/home/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -lR
installing to /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-05-09 05:18:56.430][biodb::testContext]
biodb.INFO [2024-05-09 05:18:56.433][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-09 05:18:56.434][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-05-09 05:18:56.436][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-09 05:18:56.437][biodb::testContext]
biodb.INFO [2024-05-09 05:18:56.439][biodb::testThat]
biodb.INFO [2024-05-09 05:18:56.441][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2024-05-09 05:18:56.442][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:18:56.443][biodb::testThat]
biodb.INFO [2024-05-09 05:18:56.577][biodb::testContext]
biodb.INFO [2024-05-09 05:18:56.578][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-09 05:18:56.579][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-05-09 05:18:56.581][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-09 05:18:56.582][biodb::testContext]
biodb.INFO [2024-05-09 05:18:56.593][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-09 05:18:56.596][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-05-09 05:18:56.617][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-09 05:18:56.618][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-09 05:18:56.620][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-09 05:18:56.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.625][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-09 05:18:56.651][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-09 05:18:56.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.657][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-09 05:18:56.658][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-09 05:18:56.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.663][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-09 05:18:56.665][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-09 05:18:56.666][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-09 05:18:56.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.671][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-09 05:18:56.672][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-09 05:18:56.674][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-09 05:18:56.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.679][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-09 05:18:56.680][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-09 05:18:56.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.685][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-09 05:18:56.686][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-09 05:18:56.688][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-09 05:18:56.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.693][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-09 05:18:56.694][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-09 05:18:56.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.699][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-09 05:18:56.701][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-09 05:18:56.702][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-09 05:18:56.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.707][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-09 05:18:56.708][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-09 05:18:56.710][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-09 05:18:56.711][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-09 05:18:56.713][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-09 05:18:56.714][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-09 05:18:56.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.719][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-09 05:18:56.721][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-09 05:18:56.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.726][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-09 05:18:56.727][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-09 05:18:56.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.732][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-09 05:18:56.733][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-09 05:18:56.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.738][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-09 05:18:56.740][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-09 05:18:56.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.745][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-09 05:18:56.747][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-09 05:18:56.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.752][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-09 05:18:56.753][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-09 05:18:56.758][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-09 05:18:56.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.763][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-09 05:18:56.765][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-09 05:18:56.766][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-09 05:18:56.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:56.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:56.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:56.775][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-09 05:18:56.823][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:56.846][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-09 05:18:56.848][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.849][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:18:56.851][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.861][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-09 05:18:56.863][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:56.864][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:18:56.866][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-09 05:18:56.867][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:18:56.869][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.870][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-09 05:18:56.872][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:18:56.873][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:56.875][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.876][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-09 05:18:56.876][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-09 05:18:56.876][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-09 05:18:56.876][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-09 05:18:56.876][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-09 05:18:56.878][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-09 05:18:56.880][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:18:56.881][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:18:56.882][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:18:56.884][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:18:56.885][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:18:56.886][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:18:56.888][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:56.889][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:18:56.891][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:18:56.892][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:56.893][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:56.895][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-09 05:18:56.898][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:56.899][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-09 05:18:56.901][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.902][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:18:56.903][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.905][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-09 05:18:56.906][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:56.908][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:18:56.909][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-09 05:18:56.911][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:18:56.912][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.913][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-09 05:18:56.915][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:18:56.916][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:56.918][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.919][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-09 05:18:56.919][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-09 05:18:56.919][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-09 05:18:56.919][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-09 05:18:56.919][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-09 05:18:56.921][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-09 05:18:56.922][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:18:56.923][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:18:56.925][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:18:56.926][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:18:56.927][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:18:56.928][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:18:56.930][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:56.931][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:18:56.932][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:18:56.934][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:56.935][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:56.937][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-09 05:18:56.939][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.941][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-09 05:18:56.942][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.944][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:18:56.945][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.946][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-09 05:18:56.948][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:56.949][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:18:56.951][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-09 05:18:56.952][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:18:56.953][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:56.955][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-09 05:18:56.956][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:18:56.958][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:56.959][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.961][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:56.962][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-09 05:18:56.963][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:18:56.965][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:18:56.966][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:18:56.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:18:56.969][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:18:56.970][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:18:56.971][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:56.973][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:18:56.974][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:18:56.975][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:56.977][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:56.978][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-09 05:18:56.981][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.982][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-09 05:18:56.984][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.985][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:18:56.986][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:56.988][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-09 05:18:56.989][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:56.991][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:18:56.992][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-09 05:18:56.994][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:18:56.995][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:56.996][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-09 05:18:56.998][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:18:56.999][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:57.001][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:57.002][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:57.003][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-09 05:18:57.005][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:18:57.006][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:18:57.007][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:18:57.009][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:18:57.010][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:18:57.011][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:18:57.013][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:57.014][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:18:57.015][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:18:57.017][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:57.018][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:57.023][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-09 05:18:57.025][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.140][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-09 05:18:57.146][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-09 05:18:57.149][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-09 05:18:57.151][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-09 05:18:57.153][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-09 05:18:57.155][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-09 05:18:57.157][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-09 05:18:57.159][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-09 05:18:57.161][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-09 05:18:57.163][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-09 05:18:57.165][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-09 05:18:57.167][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-09 05:18:57.169][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-09 05:18:57.171][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-09 05:18:57.173][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-09 05:18:57.175][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-09 05:18:57.177][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-09 05:18:57.179][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-09 05:18:57.181][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-09 05:18:57.183][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-09 05:18:57.185][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-09 05:18:57.187][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-09 05:18:57.189][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-09 05:18:57.191][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-09 05:18:57.193][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-09 05:18:57.195][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-09 05:18:57.197][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-09 05:18:57.200][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-09 05:18:57.202][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-09 05:18:57.204][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-09 05:18:57.206][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-09 05:18:57.208][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-09 05:18:57.210][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-09 05:18:57.212][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-09 05:18:57.214][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-09 05:18:57.216][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-09 05:18:57.218][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-09 05:18:57.220][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-09 05:18:57.222][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-09 05:18:57.224][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-09 05:18:57.226][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-09 05:18:57.228][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-09 05:18:57.230][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-09 05:18:57.232][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-09 05:18:57.234][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-09 05:18:57.236][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-09 05:18:57.238][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-09 05:18:57.240][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-09 05:18:57.242][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-09 05:18:57.245][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-09 05:18:57.246][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-09 05:18:57.249][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-09 05:18:57.251][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-09 05:18:57.253][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-09 05:18:57.255][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-09 05:18:57.257][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-09 05:18:57.259][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-09 05:18:57.261][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-09 05:18:57.263][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-09 05:18:57.265][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-09 05:18:57.267][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-09 05:18:57.269][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-09 05:18:57.271][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-09 05:18:57.274][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-09 05:18:57.276][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-09 05:18:57.278][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-09 05:18:57.280][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-09 05:18:57.282][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-09 05:18:57.284][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-09 05:18:57.286][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-09 05:18:57.288][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-09 05:18:57.290][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-09 05:18:57.293][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-09 05:18:57.295][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-09 05:18:57.297][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-09 05:18:57.299][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-09 05:18:57.301][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-09 05:18:57.303][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-09 05:18:57.305][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-09 05:18:57.307][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-09 05:18:57.310][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-09 05:18:57.312][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-09 05:18:57.314][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-09 05:18:57.323][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-09 05:18:57.325][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-09 05:18:57.329][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-09 05:18:57.331][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.334][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:18:57.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:18:57.503][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-09 05:18:57.519][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-09 05:18:57.521][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:57.523][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-09 05:18:57.524][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:57.526][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:18:57.527][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:57.529][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-09 05:18:57.530][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:57.532][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:18:57.533][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-09 05:18:57.535][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:18:57.536][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:57.538][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-09 05:18:57.539][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-09 05:18:57.541][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-09 05:18:57.542][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-09 05:18:57.544][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-09 05:18:57.544][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-09 05:18:57.544][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-09 05:18:57.545][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-09 05:18:57.547][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:18:57.548][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:18:57.549][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:18:57.551][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:18:57.552][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:18:57.553][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:18:57.554][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-09 05:18:57.554][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-09 05:18:57.556][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:18:57.557][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:18:57.559][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-09 05:18:57.560][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:18:57.568][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-09 05:18:57.571][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-09 05:18:57.573][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-09 05:18:57.575][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-09 05:18:57.578][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-09 05:18:57.608][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-09 05:18:57.610][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-09 05:18:57.615][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-09 05:18:57.672][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-09 05:18:57.678][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:18:57.679][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:18:57.681][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-09 05:18:57.682][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-09 05:18:57.684][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-09 05:18:57.684][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-09 05:18:57.685][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:18:57.687][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:18:57.688][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-09 05:18:57.689][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-09 05:18:57.690][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-09 05:18:57.716][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-09 05:18:57.718][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:18:57.719][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:18:57.721][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-09 05:18:57.723][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:18:57.724][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-09 05:18:57.734][biodb::testThat]
biodb.INFO [2024-05-09 05:18:57.736][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-05-09 05:18:57.737][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:18:57.739][biodb::testThat]
biodb.TRACE[2024-05-09 05:18:57.745][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-05-09 05:18:57.748][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-09 05:18:57.753][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-09 05:18:57.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-09 05:18:57.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:57.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:57.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:57.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:57.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:57.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-09 05:18:57.791][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:57.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:57.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:57.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:57.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.822][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:57.823][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:57.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.826][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.865][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:57.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:57.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.871][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:18:57.873][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:18:57.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.876][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.878][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:18:57.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:18:57.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.884][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:18:57.886][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:18:57.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.888][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.890][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:18:57.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:18:57.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:18:57.909][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:18:57.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:18:57.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:18:57.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.919][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:57.920][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:57.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.923][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:57.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:57.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.931][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:57.932][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:57.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.935][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.937][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:57.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:57.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:57.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:57.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.947][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:57.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:57.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.955][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:57.956][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:57.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.959][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:57.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:57.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.967][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:57.968][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:57.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.971][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:57.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:57.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.979][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:18:57.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:18:57.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.983][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:18:57.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:18:57.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:18:57.992][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:18:57.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:57.995][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:57.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:18:57.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:18:58.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.003][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.004][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.007][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:58.017][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:58.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.019][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:58.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:58.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.027][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.031][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.039][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:18:58.040][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:18:58.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.043][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:18:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:18:58.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:18:58.052][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:18:58.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.055][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:18:58.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:18:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.063][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-09 05:18:58.064][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:58.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.067][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.069][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-09 05:18:58.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:58.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.149][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:18:58.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:18:58.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.155][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:18:58.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:18:58.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.160][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:18:58.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:18:58.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.166][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:18:58.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:18:58.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.171][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:18:58.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:18:58.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.177][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:18:58.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:18:58.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:58.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:58.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:58.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:58.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:58.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:58.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:58.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:58.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:58.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:58.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:58.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:58.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:58.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:58.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:58.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:58.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:58.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:58.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.268][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:18:58.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:18:58.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.273][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:18:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:18:58.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.279][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:18:58.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:18:58.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:18:58.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:18:58.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:18:58.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:18:58.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:18:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:18:58.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:18:58.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:18:58.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:18:58.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:18:58.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:18:58.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:18:58.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.342][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.347][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.353][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:58.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:58.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:58.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:58.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:58.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:58.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.407][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.413][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.418][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:18:58.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:18:58.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:18:58.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:18:58.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:18:58.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:18:58.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.440][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-09 05:18:58.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.462][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-09 05:18:58.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:58.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.528][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.534][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.545][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:18:58.585][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-09 05:18:58.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-09 05:18:58.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-09 05:18:58.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.594][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-09 05:18:58.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-09 05:18:58.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.600][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-09 05:18:58.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-09 05:18:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.605][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-09 05:18:58.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-09 05:18:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.641][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.688][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.693][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.699][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:18:58.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.740][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.744][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:58.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:58.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.761][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.767][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.773][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.778][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.780][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.784][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:58.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.817][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.818][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.821][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:58.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.855][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.859][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:58.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.898][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:18:58.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.916][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.930][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.935][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.941][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.942][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.945][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.947][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:58.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.980][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.985][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:58.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:58.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:58.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:58.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.003][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:18:59.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:18:59.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.009][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:18:59.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:18:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.014][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:18:59.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:18:59.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.020][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:18:59.022][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:18:59.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.024][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.026][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:18:59.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:18:59.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:18:59.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:18:59.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:18:59.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:18:59.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:18:59.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:18:59.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.060][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:18:59.062][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:18:59.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.065][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:18:59.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:18:59.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.084][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.090][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.097][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.103][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.105][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.107][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.109][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.150][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.154][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.191][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.192][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.195][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.232][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.233][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.236][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.270][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.272][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.274][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:18:59.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:18:59.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:18:59.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:18:59.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:18:59.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:18:59.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.308][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:18:59.310][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:18:59.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.312][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:18:59.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:18:59.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:18:59.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:18:59.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:18:59.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:18:59.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:18:59.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:18:59.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.354][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:18:59.356][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:18:59.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.358][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:18:59.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:18:59.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.392][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.396][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.413][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.419][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.424][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.430][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.431][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.434][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.436][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.451][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:59.453][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:59.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.456][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.462][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.463][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.466][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.472][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.474][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.476][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:18:59.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:18:59.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.487][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.493][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:59.495][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:59.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.498][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.504][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.505][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.508][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.514][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.516][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.518][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.524][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.526][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.529][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.535][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:18:59.536][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:18:59.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.539][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.553][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:18:59.554][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:18:59.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.557][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:18:59.565][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:18:59.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.568][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.574][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.576][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.578][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.585][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:59.586][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:59.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.589][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.597][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.599][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.606][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:59.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:59.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.610][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.616][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:59.618][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:59.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.620][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.626][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:59.628][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:59.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.631][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.637][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:18:59.638][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:18:59.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.641][ef$get] fields variable is a list.
biodb.INFO [2024-05-09 05:18:59.651][biodb::testThat]
biodb.INFO [2024-05-09 05:18:59.652][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-09 05:18:59.653][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:18:59.655][biodb::testThat]
biodb.DEBUG[2024-05-09 05:18:59.674][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-05-09 05:18:59.683][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-09 05:18:59.690][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:18:59.692][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-09 05:18:59.695][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-05-09 05:18:59.697][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-09 05:18:59.701][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-05-09 05:18:59.703][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-09 05:18:59.736][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-09 05:18:59.738][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-09 05:18:59.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-09 05:18:59.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:18:59.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:18:59.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:18:59.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:18:59.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:18:59.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-09 05:18:59.766][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:59.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:59.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.770][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:59.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:59.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.778][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:59.779][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:59.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.784][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:59.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:18:59.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.790][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.791][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.794][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.796][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:18:59.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.801][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.803][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.805][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.807][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:18:59.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:18:59.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:18:59.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.817][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:18:59.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:18:59.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.824][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:59.826][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:59.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.829][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:59.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:18:59.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.836][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:59.838][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:59.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.840][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.842][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:59.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:18:59.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.848][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:59.850][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:59.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.852][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:59.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:18:59.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.860][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.861][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.864][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:18:59.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.872][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.873][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.876][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:18:59.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.884][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:18:59.885][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:18:59.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.888][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:18:59.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:18:59.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.895][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:18:59.897][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:18:59.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.899][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:18:59.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:18:59.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.909][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:18:59.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.921][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.923][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:18:59.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.931][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:59.933][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:59.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.935][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:18:59.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:18:59.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.950][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:18:59.952][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:18:59.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.954][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.956][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:18:59.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:18:59.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.962][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:18:59.967][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:18:59.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.971][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:18:59.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:18:59.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.981][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-09 05:18:59.983][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.986][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.988][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-09 05:18:59.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:18:59.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:18:59.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:18:59.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:18:59.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:18:59.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:00.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:00.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:00.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:00.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.014][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:00.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:00.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.021][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:00.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:00.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.027][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:00.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:00.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.033][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:00.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:00.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.040][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:00.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:00.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.046][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:00.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:00.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:00.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:00.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:00.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:00.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:00.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:00.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:00.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:00.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:00.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:00.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:00.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:00.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:00.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:00.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:00.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:00.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:00.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:00.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:00.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:00.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:00.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:00.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:00.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:00.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:00.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:00.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:00.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:00.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:00.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:00.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.152][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:00.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:00.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.158][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:00.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:00.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.165][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:00.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:00.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:00.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:00.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.191][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:00.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:00.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:00.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:00.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:00.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:00.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:00.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:00.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:00.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:00.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.238][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:00.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:00.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.244][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:00.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:00.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.250][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:00.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:00.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:00.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:00.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:00.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:00.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:00.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:00.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:00.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:00.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:00.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:00.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:00.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:00.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.306][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.312][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.317][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:00.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:00.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:00.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:00.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.334][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:00.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:00.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.340][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-09 05:19:00.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.363][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-09 05:19:00.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:00.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.406][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:00.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:00.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.411][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:00.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:00.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:00.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:00.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.422][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:00.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:00.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:00.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:00.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:00.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:00.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:00.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:00.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:00.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:00.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:00.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:00.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:00.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:00.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:00.462][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-09 05:19:00.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-09 05:19:00.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-09 05:19:00.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-09 05:19:00.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-09 05:19:00.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-09 05:19:00.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-09 05:19:00.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-09 05:19:00.490][biodb::testThat]
biodb.INFO [2024-05-09 05:19:00.491][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-09 05:19:00.492][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:00.494][biodb::testThat]
biodb.TRACE[2024-05-09 05:19:00.498][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.499][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.502][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:00.504][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-05-09 05:19:00.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:00.561][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-05-09 05:19:00.563][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-05-09 05:19:00.564][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-09 05:19:00.565][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-09 05:19:00.568][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:00.577][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:00.580][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-09 05:19:00.582][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:00.583][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-09 05:19:00.585][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-09 05:19:00.587][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-09 05:19:00.588][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-09 05:19:00.590][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-09 05:19:00.591][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-09 05:19:00.592][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-09 05:19:00.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.607][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:00.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:00.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:00.618][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-09 05:19:00.620][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-09 05:19:00.621][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-05-09 05:19:00.637][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:00.639][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:00.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.642][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:00.643][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-05-09 05:19:00.659][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:00.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:00.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.665][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:00.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:00.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.671][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:00.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:00.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:00.681][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-05-09 05:19:00.768][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-09 05:19:00.769][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-05-09 05:19:00.771][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-05-09 05:19:00.793][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:00.795][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:00.797][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-09 05:19:00.799][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:00.801][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-09 05:19:00.824][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-09 05:19:00.825][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-09 05:19:00.827][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-09 05:19:00.828][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-09 05:19:00.829][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-09 05:19:00.831][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-09 05:19:00.833][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:00.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:00.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.838][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:00.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:00.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.844][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:00.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:00.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.849][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:00.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:00.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:00.854][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-09 05:19:00.856][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-09 05:19:00.857][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-05-09 05:19:00.872][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.873][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.876][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:00.877][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-05-09 05:19:00.892][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.898][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.903][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:00.912][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-05-09 05:19:00.914][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-05-09 05:19:00.916][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-05-09 05:19:00.917][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-05-09 05:19:00.919][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:00.921][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:00.923][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-09 05:19:00.925][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:00.926][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-09 05:19:00.928][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-09 05:19:00.930][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-09 05:19:00.931][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-09 05:19:00.932][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-09 05:19:00.934][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-09 05:19:00.935][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-09 05:19:00.945][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.950][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.956][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:00.961][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:00.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:00.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:00.966][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-09 05:19:00.968][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-09 05:19:00.969][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-05-09 05:19:00.988][biodb::testThat]
biodb.INFO [2024-05-09 05:19:00.989][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-05-09 05:19:00.991][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:00.992][biodb::testThat]
biodb.TRACE[2024-05-09 05:19:01.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:01.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:01.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:01.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:01.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:01.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:01.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:01.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:01.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:01.035][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-05-09 05:19:01.037][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-09 05:19:01.038][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-09 05:19:01.040][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:01.042][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:01.044][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-09 05:19:01.046][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:01.047][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-09 05:19:01.049][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-09 05:19:01.050][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-09 05:19:01.051][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-09 05:19:01.053][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-09 05:19:01.054][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-09 05:19:01.055][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-09 05:19:01.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:01.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:01.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:01.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:01.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:01.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:01.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:01.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:01.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:01.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:01.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:01.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:01.080][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-09 05:19:01.081][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-05-09 05:19:01.100][biodb::testThat]
biodb.INFO [2024-05-09 05:19:01.102][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-05-09 05:19:01.103][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:01.104][biodb::testThat]
biodb.TRACE[2024-05-09 05:19:01.139][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-09 05:19:01.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-09 05:19:01.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:01.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-09 05:19:01.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-09 05:19:01.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:01.150][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-09 05:19:01.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-09 05:19:01.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:01.155][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-09 05:19:01.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-09 05:19:01.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:01.219][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-09 05:19:01.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-09 05:19:01.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:01.225][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-09 05:19:01.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-09 05:19:01.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:01.230][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-09 05:19:01.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-09 05:19:01.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:01.235][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-09 05:19:01.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-09 05:19:01.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:01.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-09 05:19:01.253][biodb::testThat]
biodb.INFO [2024-05-09 05:19:01.254][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-09 05:19:01.256][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:01.257][biodb::testThat]
biodb.INFO [2024-05-09 05:19:01.267][biodb::testThat]
biodb.INFO [2024-05-09 05:19:01.269][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-09 05:19:01.270][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:01.271][biodb::testThat]
biodb.INFO [2024-05-09 05:19:01.281][biodb::testThat]
biodb.INFO [2024-05-09 05:19:01.283][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-09 05:19:01.284][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:01.285][biodb::testThat]
biodb.DEBUG[2024-05-09 05:19:01.290][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-05-09 05:19:08.895][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-05-09 05:19:09.427][biodb::testThat]
biodb.INFO [2024-05-09 05:19:09.429][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-09 05:19:09.431][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:09.433][biodb::testThat]
biodb.DEBUG[2024-05-09 05:19:11.304][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-05-09 05:19:11.803][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:11.927][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:11.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:11.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:11.933][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:11.936][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:11.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:11.940][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:11.942][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:11.944][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:11.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:11.948][ef$get] fields variable is a list.
biodb.INFO [2024-05-09 05:19:11.951][biodb::testThat]
biodb.INFO [2024-05-09 05:19:11.954][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-05-09 05:19:11.955][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:11.958][biodb::testThat]
biodb.DEBUG[2024-05-09 05:19:11.961][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-05-09 05:19:12.061][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-09 05:19:12.063][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:12.065][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-09 05:19:12.089][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-05-09 05:19:12.091][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-09 05:19:12.093][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-09 05:19:12.094][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-09 05:19:12.104][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:12.106][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-09 05:19:12.108][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-09 05:19:12.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-09 05:19:12.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:12.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:12.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-09 05:19:12.126][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:12.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:12.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.131][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:12.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:12.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:12.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:12.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:12.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:12.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:12.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:12.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:12.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:12.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:12.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:12.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:12.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:12.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:12.169][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-05-09 05:19:12.170][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-05-09 05:19:12.193][biodb::testThat]
biodb.INFO [2024-05-09 05:19:12.195][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-05-09 05:19:12.196][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:12.197][biodb::testThat]
biodb.DEBUG[2024-05-09 05:19:12.208][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-05-09 05:19:12.209][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-05-09 05:19:12.211][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-09 05:19:12.213][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:12.215][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-09 05:19:12.217][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-05-09 05:19:12.219][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-09 05:19:12.221][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-09 05:19:12.222][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-09 05:19:12.224][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:12.226][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-09 05:19:12.227][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-09 05:19:12.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-09 05:19:12.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:12.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:12.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-09 05:19:12.244][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:12.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:12.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.290][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:12.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:12.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:12.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:12.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:12.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:12.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:12.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:12.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:12.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:12.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:12.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:12.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:12.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:12.328][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-05-09 05:19:12.329][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-05-09 05:19:12.331][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-05-09 05:19:12.348][biodb::testThat]
biodb.INFO [2024-05-09 05:19:12.349][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-05-09 05:19:12.350][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:12.352][biodb::testThat]
biodb.INFO [2024-05-09 05:19:12.382][biodb::testThat]
biodb.INFO [2024-05-09 05:19:12.383][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-05-09 05:19:12.385][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:12.386][biodb::testThat]
biodb.DEBUG[2024-05-09 05:19:12.389][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:12.391][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:12.393][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-09 05:19:12.395][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:12.396][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-09 05:19:12.398][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-09 05:19:12.399][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-09 05:19:12.400][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-09 05:19:12.402][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-05-09 05:19:12.412][biodb::testThat]
biodb.INFO [2024-05-09 05:19:12.413][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-05-09 05:19:12.414][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:12.416][biodb::testThat]
biodb.DEBUG[2024-05-09 05:19:12.419][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:12.421][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:12.422][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-09 05:19:12.424][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:12.426][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-09 05:19:12.427][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-09 05:19:12.429][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-09 05:19:12.430][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-09 05:19:12.431][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-05-09 05:19:12.452][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:12.453][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:12.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.456][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.457][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:12.459][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:12.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.461][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:12.462][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:12.464][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:12.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:12.466][ef$get] fields variable is a list.
biodb.INFO [2024-05-09 05:19:12.468][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-09 05:19:12.469][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-09 05:19:12.481][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-09 05:19:12.482][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-09 05:19:12.484][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:12.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:12.486][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.488][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-09 05:19:12.494][biodb::testContext]
biodb.INFO [2024-05-09 05:19:12.496][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-09 05:19:12.497][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-05-09 05:19:12.498][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-09 05:19:12.499][biodb::testContext]
biodb.INFO [2024-05-09 05:19:12.504][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-09 05:19:12.507][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-05-09 05:19:12.511][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-09 05:19:12.513][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-09 05:19:12.514][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-09 05:19:12.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.519][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-09 05:19:12.520][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-09 05:19:12.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.525][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-09 05:19:12.527][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-09 05:19:12.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.532][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-09 05:19:12.533][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-09 05:19:12.534][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-09 05:19:12.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.539][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-09 05:19:12.540][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-09 05:19:12.542][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-09 05:19:12.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.547][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-09 05:19:12.548][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-09 05:19:12.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.553][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-09 05:19:12.554][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-09 05:19:12.555][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-09 05:19:12.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.560][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-09 05:19:12.562][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-09 05:19:12.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.567][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-09 05:19:12.568][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-09 05:19:12.569][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-09 05:19:12.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.574][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-09 05:19:12.576][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-09 05:19:12.577][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-09 05:19:12.578][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-09 05:19:12.580][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-09 05:19:12.581][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-09 05:19:12.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.595][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-09 05:19:12.597][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-09 05:19:12.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.602][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-09 05:19:12.603][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-09 05:19:12.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.608][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-09 05:19:12.609][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-09 05:19:12.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.614][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-09 05:19:12.616][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-09 05:19:12.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.621][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-09 05:19:12.622][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-09 05:19:12.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.627][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-09 05:19:12.629][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-09 05:19:12.633][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-09 05:19:12.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.638][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-09 05:19:12.640][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-09 05:19:12.641][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-09 05:19:12.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.646][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-09 05:19:12.649][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:12.650][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-09 05:19:12.651][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.653][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:19:12.654][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.655][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-09 05:19:12.657][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:12.658][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:19:12.659][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-09 05:19:12.661][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:19:12.662][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.663][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-09 05:19:12.665][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:19:12.666][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.667][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.669][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-09 05:19:12.669][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-09 05:19:12.669][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-09 05:19:12.669][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-09 05:19:12.669][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-09 05:19:12.670][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-09 05:19:12.671][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:12.672][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:12.674][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:19:12.675][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:12.676][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:12.677][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:19:12.679][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.680][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:19:12.681][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:19:12.682][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:12.684][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.685][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-09 05:19:12.688][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:12.689][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-09 05:19:12.690][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.692][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:19:12.693][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.694][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-09 05:19:12.696][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:12.697][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:19:12.698][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-09 05:19:12.700][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:19:12.701][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.702][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-09 05:19:12.704][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:19:12.705][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.706][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.708][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-09 05:19:12.708][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-09 05:19:12.708][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-09 05:19:12.708][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-09 05:19:12.708][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-09 05:19:12.709][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-09 05:19:12.710][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:12.711][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:12.713][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:19:12.714][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:12.715][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:12.716][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:19:12.718][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.719][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:19:12.720][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:19:12.721][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:12.723][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.724][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-09 05:19:12.727][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.728][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-09 05:19:12.730][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.731][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:19:12.732][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.734][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-09 05:19:12.735][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:12.745][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:19:12.746][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-09 05:19:12.748][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:19:12.749][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:12.751][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-09 05:19:12.752][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:19:12.753][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.755][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.756][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.757][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-09 05:19:12.759][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:12.760][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:12.761][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:19:12.762][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:12.764][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:12.765][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:19:12.766][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.768][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:19:12.769][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:19:12.770][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:12.771][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.773][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-09 05:19:12.775][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.777][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-09 05:19:12.778][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.779][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:19:12.781][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.782][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-09 05:19:12.783][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:12.785][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:19:12.786][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-09 05:19:12.787][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:19:12.789][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:12.790][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-09 05:19:12.791][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:19:12.793][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.794][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:12.795][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.797][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-09 05:19:12.798][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:12.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:12.801][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:19:12.802][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:12.803][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:12.804][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:19:12.806][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.807][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:19:12.808][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:19:12.809][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:12.811][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:12.813][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-09 05:19:12.814][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:12.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:12.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:12.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:12.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:12.926][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-09 05:19:12.928][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-09 05:19:12.930][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-09 05:19:12.932][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-09 05:19:12.934][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-09 05:19:12.936][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-09 05:19:12.938][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-09 05:19:12.940][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-09 05:19:12.942][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-09 05:19:12.943][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-09 05:19:12.945][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-09 05:19:12.947][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-09 05:19:12.949][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-09 05:19:12.951][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-09 05:19:12.953][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-09 05:19:12.955][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-09 05:19:12.957][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-09 05:19:12.959][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-09 05:19:12.961][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-09 05:19:12.963][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-09 05:19:12.965][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-09 05:19:12.966][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-09 05:19:12.968][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-09 05:19:12.970][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-09 05:19:12.972][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-09 05:19:12.974][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-09 05:19:12.976][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-09 05:19:12.978][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-09 05:19:12.980][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-09 05:19:12.982][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-09 05:19:12.983][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-09 05:19:12.985][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-09 05:19:12.987][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-09 05:19:12.989][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-09 05:19:12.991][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-09 05:19:12.993][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-09 05:19:12.995][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-09 05:19:12.997][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-09 05:19:12.999][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-09 05:19:13.000][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-09 05:19:13.002][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-09 05:19:13.004][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-09 05:19:13.006][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-09 05:19:13.008][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-09 05:19:13.010][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-09 05:19:13.012][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-09 05:19:13.014][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-09 05:19:13.016][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-09 05:19:13.018][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-09 05:19:13.020][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-09 05:19:13.022][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-09 05:19:13.024][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-09 05:19:13.034][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-09 05:19:13.037][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-09 05:19:13.039][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-09 05:19:13.040][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-09 05:19:13.042][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-09 05:19:13.044][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-09 05:19:13.046][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-09 05:19:13.048][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-09 05:19:13.050][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-09 05:19:13.052][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-09 05:19:13.054][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-09 05:19:13.056][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-09 05:19:13.058][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-09 05:19:13.060][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-09 05:19:13.062][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-09 05:19:13.064][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-09 05:19:13.066][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-09 05:19:13.067][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-09 05:19:13.070][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-09 05:19:13.072][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-09 05:19:13.074][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-09 05:19:13.075][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-09 05:19:13.077][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-09 05:19:13.079][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-09 05:19:13.081][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-09 05:19:13.083][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-09 05:19:13.085][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-09 05:19:13.087][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-09 05:19:13.089][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-09 05:19:13.091][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-09 05:19:13.093][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-09 05:19:13.095][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-09 05:19:13.097][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-09 05:19:13.098][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-09 05:19:13.099][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.102][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:13.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:13.254][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-09 05:19:13.256][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-09 05:19:13.258][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:13.260][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-09 05:19:13.261][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:13.262][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:19:13.263][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:13.265][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-09 05:19:13.266][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:13.267][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:19:13.269][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-09 05:19:13.270][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:19:13.271][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:13.273][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-09 05:19:13.274][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-09 05:19:13.275][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-09 05:19:13.277][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:13.278][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-09 05:19:13.278][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-09 05:19:13.278][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-09 05:19:13.279][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-09 05:19:13.281][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:13.282][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:13.283][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:19:13.284][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:13.285][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:13.287][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:19:13.288][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-09 05:19:13.288][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-09 05:19:13.290][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:19:13.291][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:19:13.292][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:13.294][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:13.296][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-09 05:19:13.298][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-09 05:19:13.300][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-09 05:19:13.302][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-09 05:19:13.304][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-09 05:19:13.309][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-09 05:19:13.310][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-09 05:19:13.321][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-09 05:19:13.323][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-09 05:19:13.325][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:19:13.326][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:19:13.328][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-09 05:19:13.329][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-09 05:19:13.331][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-09 05:19:13.331][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-09 05:19:13.332][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:19:13.333][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:19:13.334][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-09 05:19:13.336][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-09 05:19:13.337][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-09 05:19:13.339][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-09 05:19:13.341][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:19:13.342][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:19:13.344][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-09 05:19:13.346][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:19:13.347][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-09 05:19:13.349][biodb::testThat]
biodb.INFO [2024-05-09 05:19:13.350][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-05-09 05:19:13.351][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:13.353][biodb::testThat]
biodb.DEBUG[2024-05-09 05:19:13.358][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:13.360][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:13.362][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-09 05:19:13.364][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:13.365][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-09 05:19:13.367][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-09 05:19:13.368][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-09 05:19:13.370][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-09 05:19:13.371][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-09 05:19:13.375][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-05-09 05:19:13.382][biodb::testThat]
biodb.INFO [2024-05-09 05:19:13.384][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-05-09 05:19:13.385][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:13.386][biodb::testThat]
biodb.DEBUG[2024-05-09 05:19:13.389][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-05-09 05:19:13.390][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-09 05:19:13.393][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:13.394][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-09 05:19:13.397][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-05-09 05:19:13.399][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-09 05:19:13.402][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-05-09 05:19:13.403][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-09 05:19:13.405][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-09 05:19:13.407][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-09 05:19:13.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-09 05:19:13.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:13.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:13.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:13.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:13.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:13.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-09 05:19:13.426][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:13.427][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:13.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.430][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:13.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:13.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.438][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:13.439][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:13.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.442][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.443][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:13.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:13.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.449][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:13.450][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:13.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.453][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.455][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:13.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:13.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.461][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:13.462][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:13.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.465][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.467][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:13.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:13.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:13.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:13.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.487][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:13.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:13.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.495][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:13.497][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:13.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.500][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:13.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:13.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.508][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:13.510][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:13.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.512][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.514][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:13.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:13.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:13.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:13.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.524][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:13.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:13.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.531][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:13.533][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:13.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.535][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:13.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:13.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.543][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:13.545][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:13.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.559][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:13.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:13.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.587][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:13.591][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:13.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.596][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:13.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.609][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:13.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:13.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:13.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:13.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:13.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:13.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.633][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:13.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:13.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:13.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:13.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.651][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:13.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:13.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.663][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:13.666][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:13.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.670][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:13.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:13.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.682][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:13.684][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:13.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.688][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.691][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:13.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:13.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.701][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:13.703][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:13.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.802][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:13.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:13.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.815][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-09 05:19:13.817][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:13.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.821][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.824][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-09 05:19:13.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:13.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:13.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:13.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:13.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:13.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:13.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:13.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.860][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:13.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:13.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.868][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:13.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:13.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.876][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:13.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:13.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.885][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:13.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:13.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.892][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:13.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:13.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.899][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:13.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:13.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:13.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:13.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:13.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:13.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:13.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:13.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:13.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:13.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:13.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:13.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:13.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:13.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:13.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:13.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:13.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:13.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:13.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:13.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:13.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:13.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:13.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:13.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:13.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:13.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:13.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:13.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:13.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:13.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:13.998][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:13.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:14.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.004][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:14.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:14.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:14.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:14.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:14.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:14.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.021][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:14.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:14.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:14.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:14.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:14.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:14.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:14.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:14.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:14.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:14.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.067][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:14.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:14.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.073][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:14.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:14.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.079][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:14.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:14.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:14.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:14.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:14.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:14.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:14.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:14.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:14.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:14.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:14.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:14.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:14.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:14.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:14.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:14.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:14.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:14.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:14.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:14.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.143][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:14.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:14.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.148][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:14.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:14.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.154][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:14.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:14.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:14.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:14.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.165][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:14.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:14.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:14.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:14.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.176][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-09 05:19:14.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.199][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-09 05:19:14.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:14.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:14.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:14.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:14.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:14.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:14.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:14.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:14.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:14.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:14.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:14.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.233][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:14.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:14.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.239][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:14.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:14.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:14.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:14.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:14.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:14.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:14.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:14.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:14.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:14.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:14.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:14.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:14.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:14.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:14.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:14.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:14.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:14.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:14.297][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-05-09 05:19:14.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:14.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:14.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:14.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:14.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:14.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:14.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:14.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-09 05:19:14.325][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-09 05:19:14.327][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-09 05:19:14.328][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-09 05:19:14.330][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-09 05:19:14.331][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:14.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:14.333][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.336][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-09 05:19:14.342][biodb::testContext]
biodb.INFO [2024-05-09 05:19:14.344][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-09 05:19:14.345][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-05-09 05:19:14.346][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-09 05:19:14.348][biodb::testContext]
biodb.INFO [2024-05-09 05:19:14.353][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-09 05:19:14.355][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-05-09 05:19:14.360][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-09 05:19:14.361][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-09 05:19:14.363][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-09 05:19:14.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.368][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-09 05:19:14.369][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-09 05:19:14.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.374][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-09 05:19:14.376][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-09 05:19:14.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.381][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-09 05:19:14.382][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-09 05:19:14.384][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-09 05:19:14.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.389][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-09 05:19:14.390][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-09 05:19:14.392][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-09 05:19:14.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.397][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-09 05:19:14.398][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-09 05:19:14.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.403][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-09 05:19:14.405][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-09 05:19:14.406][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-09 05:19:14.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.411][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-09 05:19:14.413][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-09 05:19:14.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.418][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-09 05:19:14.419][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-09 05:19:14.421][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-09 05:19:14.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.426][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-09 05:19:14.427][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-09 05:19:14.429][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-09 05:19:14.430][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-09 05:19:14.432][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-09 05:19:14.442][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-09 05:19:14.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.447][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-09 05:19:14.448][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-09 05:19:14.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.453][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-09 05:19:14.454][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-09 05:19:14.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.459][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-09 05:19:14.461][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-09 05:19:14.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.465][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-09 05:19:14.467][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-09 05:19:14.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.472][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-09 05:19:14.473][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-09 05:19:14.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.478][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-09 05:19:14.479][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-09 05:19:14.484][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-09 05:19:14.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.489][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-09 05:19:14.491][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-09 05:19:14.492][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-09 05:19:14.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.497][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-09 05:19:14.500][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:14.501][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-09 05:19:14.502][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.504][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:19:14.505][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.506][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-09 05:19:14.508][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:14.509][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:19:14.510][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-09 05:19:14.512][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:19:14.513][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.514][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-09 05:19:14.516][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:19:14.517][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.518][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.520][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-09 05:19:14.520][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-09 05:19:14.520][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-09 05:19:14.520][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-09 05:19:14.520][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-09 05:19:14.521][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-09 05:19:14.522][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:14.524][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:14.525][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:19:14.526][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:14.527][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:14.529][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:19:14.530][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.531][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:19:14.533][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:19:14.534][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:14.535][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.537][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-09 05:19:14.539][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:14.541][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-09 05:19:14.542][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.543][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:19:14.545][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.546][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-09 05:19:14.547][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:14.549][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:19:14.550][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-09 05:19:14.551][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:19:14.553][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.554][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-09 05:19:14.555][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:19:14.557][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.558][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.559][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-09 05:19:14.559][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-09 05:19:14.559][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-09 05:19:14.559][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-09 05:19:14.559][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-09 05:19:14.561][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-09 05:19:14.562][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:14.563][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:14.564][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:19:14.566][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:14.567][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:14.568][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:19:14.569][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.571][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:19:14.572][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:19:14.573][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:14.575][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.576][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-09 05:19:14.587][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.589][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-09 05:19:14.590][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.591][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:19:14.593][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.594][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-09 05:19:14.595][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:14.597][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:19:14.598][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-09 05:19:14.599][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:19:14.601][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:14.602][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-09 05:19:14.603][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:19:14.605][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.606][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.608][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.609][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-09 05:19:14.610][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:14.611][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:14.613][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:19:14.614][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:14.615][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:14.616][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:19:14.618][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.619][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:19:14.620][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:19:14.622][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:14.623][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.624][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-09 05:19:14.627][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.628][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-09 05:19:14.630][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.631][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:19:14.632][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.634][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-09 05:19:14.635][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:14.636][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:19:14.638][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-09 05:19:14.639][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:19:14.640][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:14.642][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-09 05:19:14.643][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:19:14.644][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.646][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:14.647][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.648][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-09 05:19:14.650][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:14.651][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:14.652][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:19:14.653][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:14.655][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:14.656][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:19:14.657][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.658][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:19:14.660][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:19:14.661][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:14.662][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:14.664][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-09 05:19:14.665][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.777][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-09 05:19:14.779][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-09 05:19:14.781][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-09 05:19:14.783][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-09 05:19:14.785][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-09 05:19:14.787][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-09 05:19:14.788][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-09 05:19:14.790][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-09 05:19:14.792][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-09 05:19:14.794][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-09 05:19:14.796][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-09 05:19:14.798][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-09 05:19:14.800][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-09 05:19:14.801][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-09 05:19:14.803][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-09 05:19:14.805][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-09 05:19:14.807][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-09 05:19:14.809][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-09 05:19:14.811][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-09 05:19:14.813][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-09 05:19:14.815][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-09 05:19:14.817][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-09 05:19:14.819][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-09 05:19:14.821][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-09 05:19:14.823][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-09 05:19:14.825][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-09 05:19:14.827][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-09 05:19:14.828][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-09 05:19:14.830][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-09 05:19:14.832][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-09 05:19:14.834][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-09 05:19:14.836][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-09 05:19:14.838][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-09 05:19:14.840][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-09 05:19:14.842][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-09 05:19:14.844][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-09 05:19:14.846][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-09 05:19:14.848][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-09 05:19:14.850][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-09 05:19:14.852][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-09 05:19:14.854][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-09 05:19:14.864][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-09 05:19:14.866][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-09 05:19:14.868][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-09 05:19:14.870][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-09 05:19:14.872][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-09 05:19:14.874][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-09 05:19:14.876][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-09 05:19:14.878][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-09 05:19:14.880][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-09 05:19:14.882][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-09 05:19:14.884][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-09 05:19:14.886][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-09 05:19:14.887][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-09 05:19:14.889][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-09 05:19:14.891][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-09 05:19:14.893][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-09 05:19:14.895][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-09 05:19:14.897][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-09 05:19:14.899][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-09 05:19:14.901][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-09 05:19:14.903][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-09 05:19:14.905][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-09 05:19:14.907][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-09 05:19:14.909][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-09 05:19:14.911][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-09 05:19:14.913][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-09 05:19:14.915][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-09 05:19:14.917][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-09 05:19:14.919][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-09 05:19:14.921][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-09 05:19:14.923][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-09 05:19:14.925][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-09 05:19:14.927][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-09 05:19:14.929][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-09 05:19:14.931][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-09 05:19:14.933][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-09 05:19:14.936][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-09 05:19:14.938][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-09 05:19:14.940][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-09 05:19:14.942][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-09 05:19:14.944][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-09 05:19:14.946][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-09 05:19:14.948][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-09 05:19:14.950][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-09 05:19:14.951][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-09 05:19:14.953][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.955][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:14.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:14.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:14.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:14.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:14.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:14.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:14.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:14.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:14.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:14.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:14.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:14.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:14.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:14.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:14.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:15.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:15.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:15.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:15.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:15.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:15.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:15.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:15.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:15.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:15.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:15.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.106][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-09 05:19:15.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.115][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-09 05:19:15.117][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-09 05:19:15.120][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:15.121][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-09 05:19:15.122][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:15.124][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-09 05:19:15.125][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:15.127][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-09 05:19:15.128][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:15.129][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-09 05:19:15.131][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-09 05:19:15.132][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-09 05:19:15.133][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:15.135][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-09 05:19:15.136][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-09 05:19:15.138][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-09 05:19:15.139][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-09 05:19:15.141][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-09 05:19:15.141][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-09 05:19:15.141][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-09 05:19:15.150][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-09 05:19:15.152][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:15.153][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:15.154][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-09 05:19:15.156][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-09 05:19:15.157][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-09 05:19:15.158][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-09 05:19:15.160][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-09 05:19:15.160][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-09 05:19:15.161][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:19:15.162][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:19:15.163][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-09 05:19:15.165][self$setPropertyValue]
biodb.DEBUG[2024-05-09 05:19:15.166][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-09 05:19:15.168][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-09 05:19:15.170][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-09 05:19:15.172][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-09 05:19:15.174][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-09 05:19:15.179][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-09 05:19:15.180][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-09 05:19:15.182][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-09 05:19:15.184][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-09 05:19:15.186][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:19:15.187][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:19:15.189][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-09 05:19:15.190][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-09 05:19:15.191][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-09 05:19:15.191][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-09 05:19:15.193][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-09 05:19:15.194][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-09 05:19:15.195][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-09 05:19:15.196][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-09 05:19:15.198][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-09 05:19:15.200][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-09 05:19:15.201][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:19:15.202][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:19:15.204][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-09 05:19:15.206][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-09 05:19:15.207][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-09 05:19:15.209][biodb::testThat]
biodb.INFO [2024-05-09 05:19:15.210][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2024-05-09 05:19:15.212][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-09 05:19:15.213][biodb::testThat]
biodb.DEBUG[2024-05-09 05:19:15.216][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-09 05:19:15.217][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-05-09 05:19:15.218][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-05-09 05:19:15.223][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:15.224][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:15.226][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-09 05:19:15.228][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:15.229][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-09 05:19:15.231][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-09 05:19:15.233][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-09 05:19:15.234][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-09 05:19:15.235][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-09 05:19:15.237][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-09 05:19:15.238][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-05-09 05:19:15.240][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-05-09 05:19:15.242][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-09 05:19:15.244][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:15.246][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-09 05:19:15.248][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-05-09 05:19:15.250][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-09 05:19:15.252][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-05-09 05:19:15.254][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-09 05:19:15.256][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-09 05:19:15.257][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-09 05:19:15.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-09 05:19:15.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-09 05:19:15.278][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:15.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:15.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.282][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:15.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:15.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.288][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:15.298][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:15.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.301][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.303][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:15.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:15.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.308][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:15.310][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:15.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.312][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.314][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:15.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:15.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.319][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:15.321][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:15.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.323][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.325][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:15.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:15.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:15.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:15.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.335][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:15.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:15.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.342][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:15.344][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:15.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.346][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:15.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:15.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.354][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:15.356][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:15.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.358][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:15.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:15.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.366][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:15.367][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:15.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:15.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:15.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.377][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:15.379][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:15.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.381][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:15.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:15.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.389][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:15.390][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:15.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.393][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:15.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:15.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.400][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:15.401][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:15.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.404][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.406][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:15.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:15.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.411][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:15.413][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:15.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.415][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:15.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:15.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.424][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.427][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.442][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:15.444][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:15.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.447][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:15.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:15.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.454][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:15.456][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:15.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.458][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:15.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:15.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.465][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:15.467][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:15.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.469][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.471][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:15.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:15.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.476][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:15.478][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:15.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.480][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:15.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:15.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.488][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-09 05:19:15.489][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:15.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.492][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.494][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-09 05:19:15.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:15.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:15.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:15.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:15.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:15.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:15.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:15.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.516][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:15.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:15.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.522][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:15.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:15.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.528][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:15.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:15.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.533][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:15.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:15.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.539][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:15.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:15.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.544][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:15.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:15.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:15.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:15.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:15.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:15.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:15.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:15.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:15.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:15.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:15.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:15.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:15.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:15.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:15.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:15.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:15.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:15.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:15.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:15.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:15.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:15.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:15.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:15.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:15.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:15.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:15.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:15.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:15.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:15.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:15.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.651][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:15.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.657][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:15.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.664][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:15.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:15.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:15.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:15.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:15.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:15.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:15.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:15.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:15.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:15.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:15.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:15.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:15.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.724][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:15.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:15.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.730][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:15.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:15.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.736][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:15.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:15.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:15.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:15.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:15.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:15.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:15.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:15.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:15.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:15.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:15.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:15.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:15.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:15.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:15.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:15.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:15.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:15.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:15.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:15.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.800][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:15.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:15.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.805][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:15.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:15.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.811][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:15.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:15.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:15.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:15.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:15.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:15.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:15.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:15.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.832][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-09 05:19:15.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.854][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-09 05:19:15.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:15.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:15.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:15.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:15.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:15.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:15.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:15.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:15.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:15.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:15.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:15.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.888][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:15.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.902][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:15.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:15.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:15.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:15.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.914][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:15.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:15.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:15.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:15.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:15.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:15.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:15.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:15.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:15.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:15.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:15.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:15.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:15.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:15.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:15.952][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-09 05:19:15.954][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:15.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:15.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.959][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:15.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:15.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.965][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:15.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:15.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:15.971][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:15.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:15.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:15.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:15.977][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-09 05:19:15.978][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-09 05:19:15.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-09 05:19:15.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:15.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:15.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:15.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:15.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:15.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:15.993][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-05-09 05:19:15.995][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-09 05:19:15.997][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:15.999][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-09 05:19:16.002][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-05-09 05:19:16.003][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-09 05:19:16.005][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-05-09 05:19:16.007][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-09 05:19:16.053][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-09 05:19:16.055][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-09 05:19:16.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-09 05:19:16.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:16.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:16.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:16.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:16.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:16.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-09 05:19:16.073][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:16.075][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:16.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.077][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:16.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:16.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.085][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:16.086][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:16.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.089][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.090][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:16.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:16.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.096][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:16.097][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:16.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.100][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.102][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:16.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:16.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.107][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:16.109][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:16.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.111][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.113][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:16.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:16.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:16.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:16.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.123][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:16.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.130][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:16.131][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:16.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.134][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:16.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:16.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.141][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:16.142][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:16.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.145][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.147][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:16.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:16.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:16.154][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:16.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.156][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:16.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:16.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.163][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:16.165][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:16.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.167][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:16.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:16.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.174][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:16.176][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:16.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:16.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:16.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.185][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:16.187][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:16.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.198][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:16.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:16.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.205][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:16.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:16.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.209][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:16.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:16.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.220][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.227][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:16.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:16.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.231][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:16.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:16.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.238][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:16.240][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:16.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.242][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:16.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:16.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.249][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.251][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.253][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.255][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.260][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:16.261][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:16.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.264][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:16.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:16.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.271][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-09 05:19:16.272][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:16.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.275][ef$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.276][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-09 05:19:16.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:16.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:16.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:16.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:16.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:16.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:16.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:16.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.297][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:16.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:16.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.302][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:16.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:16.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.307][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-09 05:19:16.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-09 05:19:16.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.313][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:16.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:16.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.318][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:16.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:16.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.323][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-09 05:19:16.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-09 05:19:16.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:16.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:16.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:16.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:16.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-09 05:19:16.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-09 05:19:16.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:16.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:16.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:16.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:16.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:16.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-09 05:19:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:16.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:16.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:16.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:16.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:16.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-09 05:19:16.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:16.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:16.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:16.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:16.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:16.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-09 05:19:16.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:16.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:16.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:16.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:16.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:16.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-09 05:19:16.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.418][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.423][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.428][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:16.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:16.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.444][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:16.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:16.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-09 05:19:16.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-09 05:19:16.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:16.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:16.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:16.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:16.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-09 05:19:16.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-09 05:19:16.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.512][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:16.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:16.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.518][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:16.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:16.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.524][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:16.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-09 05:19:16.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:16.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:16.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:16.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:16.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:16.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-09 05:19:16.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:16.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:16.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:16.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:16.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:16.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:16.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:16.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:16.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:16.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:16.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:16.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-09 05:19:16.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.582][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:16.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:16.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.588][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:16.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:16.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.593][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-09 05:19:16.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:16.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:16.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:16.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:16.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.610][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-09 05:19:16.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-09 05:19:16.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.616][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-09 05:19:16.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.638][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-09 05:19:16.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-09 05:19:16.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:16.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:16.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:16.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:16.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:16.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:16.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:16.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:16.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-09 05:19:16.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-09 05:19:16.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.684][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:16.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:16.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.690][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:16.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:16.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:16.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:16.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.701][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:16.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-09 05:19:16.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:16.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:16.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:16.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:16.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:16.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:16.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:16.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:16.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:16.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:16.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-09 05:19:16.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-09 05:19:16.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:16.742][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-05-09 05:19:16.743][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.749][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.755][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.761][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:16.766][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-09 05:19:16.768][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-05-09 05:19:16.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-09 05:19:16.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:16.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:16.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:16.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:16.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:16.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:16.790][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-09 05:19:16.791][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-05-09 05:19:16.793][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-05-09 05:19:16.795][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:16.797][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:16.799][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-09 05:19:16.801][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:16.802][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-09 05:19:16.833][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-09 05:19:16.835][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-09 05:19:16.836][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-09 05:19:16.838][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-09 05:19:16.839][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-09 05:19:16.840][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-09 05:19:16.843][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.848][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.853][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.864][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.870][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:16.881][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-09 05:19:16.882][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-09 05:19:16.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-09 05:19:16.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:16.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:16.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:16.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:16.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:16.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-09 05:19:16.897][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.903][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.908][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.914][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.919][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.925][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.930][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:16.936][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-05-09 05:19:16.937][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-09 05:19:16.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-09 05:19:16.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:16.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:16.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:16.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:16.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:16.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-09 05:19:16.967][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-09 05:19:16.968][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-05-09 05:19:16.970][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-05-09 05:19:16.972][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:16.974][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:16.976][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-09 05:19:16.978][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-09 05:19:16.979][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-09 05:19:16.981][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-09 05:19:16.983][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-09 05:19:16.984][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-09 05:19:16.985][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-09 05:19:16.987][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-09 05:19:16.988][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-09 05:19:16.991][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:16.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:16.996][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:16.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:16.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:17.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:17.002][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:17.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:17.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:17.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:17.008][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:17.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:17.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:17.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:17.013][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:17.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:17.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:17.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:17.019][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:17.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:17.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:17.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:17.025][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:17.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:17.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:17.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:17.030][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-05-09 05:19:17.031][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-05-09 05:19:17.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-09 05:19:17.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:17.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:17.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:17.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:17.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:17.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-09 05:19:17.047][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:17.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:17.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:17.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:17.053][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:17.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:17.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:17.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:17.059][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:17.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:17.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:17.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:17.064][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:17.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:17.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:17.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:17.070][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:17.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:17.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:17.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:17.076][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:17.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:17.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:17.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-09 05:19:17.081][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-09 05:19:17.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-09 05:19:17.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-09 05:19:17.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-09 05:19:17.087][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-09 05:19:17.088][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-09 05:19:17.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-09 05:19:17.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:17.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:17.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:17.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:17.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:17.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-09 05:19:17.120][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-09 05:19:17.122][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-09 05:19:17.133][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-09 05:19:17.135][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-09 05:19:17.136][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-09 05:19:17.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-09 05:19:17.138][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-09 05:19:17.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-09 05:19:17.141][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-09 05:19:17.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
12.211 0.806 23.332