Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-06-14 14:37 -0400 (Fri, 14 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4757 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4491 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 486/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.12.0 (landing page) Oluwafemi Olusoji
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: cyanoFilter |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings cyanoFilter_1.12.0.tar.gz |
StartedAt: 2024-06-12 22:08:25 -0400 (Wed, 12 Jun 2024) |
EndedAt: 2024-06-12 22:10:39 -0400 (Wed, 12 Jun 2024) |
EllapsedTime: 134.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings cyanoFilter_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/cyanoFilter.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘cyanoFilter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cyanoFilter’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cyanoFilter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed gateFunc 8.476 0.369 6.97 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘cyanoFilter’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 0.829 | 0.017 | 0.846 | |
PhytoFilter | 0.51 | 0.02 | 0.53 | |
PhytopFilter | 0.519 | 0.011 | 0.531 | |
accTest | 0.310 | 0.005 | 0.314 | |
accuracy | 0.314 | 0.019 | 0.333 | |
cellmargin | 0.263 | 0.001 | 0.263 | |
clusterExtract | 0.665 | 0.008 | 0.672 | |
clusterExtractp | 0.710 | 0.047 | 0.759 | |
debrisNc | 0.279 | 0.020 | 0.299 | |
fullFlowframe-MarginEvents-method | 0.412 | 0.009 | 0.420 | |
fullFlowframe-PhytopFilter-method | 0.488 | 0.000 | 0.488 | |
fullFlowframe | 0.241 | 0.000 | 0.240 | |
gateFunc | 8.476 | 0.369 | 6.970 | |
ggpairsDens | 2.853 | 0.080 | 2.933 | |
ggplotDens | 0.726 | 0.044 | 0.770 | |
ggplotDens2 | 0.697 | 0.048 | 0.745 | |
goodfcs | 0.036 | 0.008 | 0.044 | |
is.DebrisFilter | 0.000 | 0.000 | 0.001 | |
is.MarginEvents | 0.000 | 0.000 | 0.001 | |
is.PhytopFilter | 0 | 0 | 0 | |
is.flowFrame | 0 | 0 | 0 | |
is.flowSet | 0.000 | 0.001 | 0.000 | |
lnTrans | 0.181 | 0.000 | 0.181 | |
newFlowframe | 0.169 | 0.048 | 0.216 | |
nona | 0.085 | 0.000 | 0.084 | |
noneg | 0.129 | 0.016 | 0.145 | |
oneDgate | 0.482 | 0.052 | 0.534 | |
pairsPlot | 1.760 | 0.036 | 1.797 | |
pigmentGate | 0.214 | 0.060 | 0.274 | |
reducedFlowframe-MarginEvents-method | 0.239 | 0.016 | 0.254 | |
reducedFlowframe | 0.255 | 0.008 | 0.263 | |
retain | 0.014 | 0.000 | 0.014 | |
rowNumbers | 0.182 | 0.036 | 0.218 | |
summaries-DebrisFilter-method | 0.242 | 0.004 | 0.246 | |
summaries-MarginEvents-method | 0.245 | 0.008 | 0.253 | |
summaries-PhytopFilter-method | 0.787 | 0.032 | 0.819 | |
summaries | 0.260 | 0.028 | 0.288 | |