Multiple platform build/check report for BioC 3.19 - BUILD results for methodical on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences"	4676
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences"	4414
merida1	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences"	4441
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences"	4417
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the methodical package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methodical.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methodical
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* checking for file ‘methodical/DESCRIPTION’ ... OK
* preparing ‘methodical’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘calculating_methylation_transcription_correlations.Rmd’ using rmarkdown
2024-03-01 20:52:36.741 R[64083:911520932] XType: com.apple.fonts is not accessible.
2024-03-01 20:52:36.742 R[64083:911520932] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘calculating_methylation_transcription_correlations.Rmd’

--- re-building ‘creating_a_methylation_rse_from_methylation_array_files.Rmd’ using rmarkdown
cg00000029	0.116312104399716
cg00000108	0.969526711446799
cg00000109	0.826436992652065
cg00000165	0.733559010754956
cg00000236	0.785472271122749
cg00000289	0.742592592839724
cg00000292	0.855404090862532
cg00000321	0.441818659689667
cg00000363	0.176755296206822
cg00000622	0.0130763174622271
--- finished re-building ‘creating_a_methylation_rse_from_methylation_array_files.Rmd’

--- re-building ‘identifying_tmrs.Rmd’ using rmarkdown
--- finished re-building ‘identifying_tmrs.Rmd’

--- re-building ‘working_with_meth_rses.Rmd’ using rmarkdown

Quitting from lines 147-162 [unnamed-chunk-6] (working_with_meth_rses.Rmd)
Error: processing vignette 'working_with_meth_rses.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘working_with_meth_rses.Rmd’

SUMMARY: processing the following file failed:
  ‘working_with_meth_rses.Rmd’

Error: Vignette re-building failed.
Execution halted

BUILD results for methodical on merida1

Summary

Command output