Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-06-18 17:59 -0400 (Tue, 18 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4758 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4492 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4464 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4464 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1375/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
multicrispr 1.14.0 (landing page) Aditya Bhagwat
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the multicrispr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/multicrispr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: multicrispr |
Version: 1.14.0 |
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:multicrispr.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings multicrispr_1.14.0.tar.gz |
StartedAt: 2024-06-17 07:34:24 -0400 (Mon, 17 Jun 2024) |
EndedAt: 2024-06-17 07:46:31 -0400 (Mon, 17 Jun 2024) |
EllapsedTime: 727.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: multicrispr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:multicrispr.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings multicrispr_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/multicrispr.Rcheck' * using R version 4.4.0 (2024-04-24 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'multicrispr/DESCRIPTION' ... OK * this is package 'multicrispr' version '1.14.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'multicrispr' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed add_genome_matches 13.75 9.53 66.80 score_ontargets 16.82 4.03 21.17 find_primespacers 16.60 2.21 19.11 find_spacers 10.87 3.48 14.70 up_flank 11.11 2.30 13.82 add_target_matches 7.73 3.11 14.29 plot_intervals 7.91 2.91 11.00 extend_for_pe 8.28 1.50 10.26 add_seq 2.95 2.85 7.74 extract_matchranges 2.86 2.36 5.58 add_inverse_strand 2.44 2.40 5.29 index_targets 1.84 2.53 5.25 index_genome 1.17 0.09 19.49 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
multicrispr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL multicrispr ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'multicrispr' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multicrispr)
multicrispr.Rcheck/tests/testthat.Rout
R version 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(multicrispr) > > test_check("multicrispr") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ] > > proc.time() user system elapsed 15.73 15.73 31.84
multicrispr.Rcheck/multicrispr-Ex.timings
name | user | system | elapsed | |
add_genome_matches | 13.75 | 9.53 | 66.80 | |
add_inverse_strand | 2.44 | 2.40 | 5.29 | |
add_seq | 2.95 | 2.85 | 7.74 | |
add_target_matches | 7.73 | 3.11 | 14.29 | |
bed_to_granges | 0.71 | 2.01 | 3.16 | |
char_to_granges | 0.70 | 0.07 | 0.80 | |
double_flank | 2.28 | 1.79 | 4.12 | |
extend_for_pe | 8.28 | 1.50 | 10.26 | |
extend_pe_to_gg | 0.64 | 0.06 | 0.70 | |
extract_matchranges | 2.86 | 2.36 | 5.58 | |
extract_subranges | 0.51 | 0.00 | 0.51 | |
find_gg | 0.94 | 0.20 | 1.16 | |
find_primespacers | 16.60 | 2.21 | 19.11 | |
find_spacers | 10.87 | 3.48 | 14.70 | |
genes_to_granges | 3.84 | 0.63 | 4.75 | |
gr2dt | 0.16 | 0.00 | 0.15 | |
has_been_indexed | 0 | 0 | 0 | |
index_genome | 1.17 | 0.09 | 19.49 | |
index_targets | 1.84 | 2.53 | 5.25 | |
plot_intervals | 7.91 | 2.91 | 11.00 | |
plot_karyogram | 1.15 | 2.56 | 4.20 | |
score_ontargets | 16.82 | 4.03 | 21.17 | |
up_flank | 11.11 | 2.30 | 13.82 | |
write_ranges | 0.18 | 0.01 | 0.22 | |