| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-06-11 14:40 -0400 (Tue, 11 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4757 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4491 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4522 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4468 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1627/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| psichomics 1.30.0 (landing page) Nuno Saraiva-Agostinho
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the psichomics package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/psichomics.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: psichomics |
| Version: 1.30.0 |
| Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data psichomics |
| StartedAt: 2024-06-09 19:04:23 -0400 (Sun, 09 Jun 2024) |
| EndedAt: 2024-06-09 19:05:59 -0400 (Sun, 09 Jun 2024) |
| EllapsedTime: 96.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data psichomics
###
##############################################################################
##############################################################################
* checking for file ‘psichomics/DESCRIPTION’ ... OK
* preparing ‘psichomics’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘AS_events_preparation.Rmd’ using rmarkdown
--- finished re-building ‘AS_events_preparation.Rmd’
--- re-building ‘CLI_tutorial.Rmd’ using rmarkdown
Quitting from lines 76-84 [TCGA options] (CLI_tutorial.Rmd)
Error: processing vignette 'CLI_tutorial.Rmd' failed with diagnostics:
lexical error: invalid char in json text.
<!DOCTYPE html PUBLIC "-//W3C//
(right here) ------^
--- failed re-building ‘CLI_tutorial.Rmd’
--- re-building ‘GUI_tutorial.Rmd’ using rmarkdown
--- finished re-building ‘GUI_tutorial.Rmd’
--- re-building ‘custom_data.Rmd’ using rmarkdown
--- finished re-building ‘custom_data.Rmd’
SUMMARY: processing the following file failed:
‘CLI_tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted