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This page was generated on 2024-08-06 17:41 -0400 (Tue, 06 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4756 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4490 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4519 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4468 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2158/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
tidySpatialExperiment 1.0.0 (landing page) William Hutchison
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | NA | |||||||||
To the developers/maintainers of the tidySpatialExperiment package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tidySpatialExperiment.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: tidySpatialExperiment |
Version: 1.0.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:tidySpatialExperiment.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings tidySpatialExperiment_1.0.0.tar.gz |
StartedAt: 2024-08-05 13:15:15 -0400 (Mon, 05 Aug 2024) |
EndedAt: 2024-08-05 13:26:13 -0400 (Mon, 05 Aug 2024) |
EllapsedTime: 658.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: tidySpatialExperiment.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:tidySpatialExperiment.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings tidySpatialExperiment_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/tidySpatialExperiment.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘tidySpatialExperiment/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘tidySpatialExperiment’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘tidySpatialExperiment’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘S4Vectors:::disableValidity’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE select_helper: no visible global function definition for ‘all_of’ join_features,SpatialExperiment: no visible binding for global variable ‘index’ Undefined global functions or variables: all_of index * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed aggregate_cells 10.306 0.388 11.554 right_join 6.001 0.073 6.998 left_join 5.392 0.059 6.277 inner_join 5.366 0.059 6.200 unnest 5.341 0.052 5.986 sample_n 5.276 0.061 6.073 join_features 5.239 0.076 6.540 rename 5.221 0.057 5.733 bind_cols 5.095 0.080 5.668 nest 5.079 0.051 5.743 bind_rows 5.050 0.066 5.974 ggplot 5.048 0.068 5.634 filter 5.030 0.061 5.571 plot_ly 4.958 0.121 5.658 count 4.993 0.059 5.437 arrange 4.948 0.057 5.402 mutate 4.947 0.051 5.658 unite 4.899 0.052 5.503 pivot_longer 4.871 0.052 5.487 separate 4.855 0.059 5.806 ellipse 4.852 0.057 5.429 group_by 4.853 0.053 5.601 rectangle 4.853 0.052 5.488 extract 4.847 0.055 5.272 formatting 4.820 0.058 5.332 slice 4.805 0.049 5.498 distinct 4.745 0.054 5.376 pull 4.737 0.058 5.374 as_tibble 4.734 0.057 5.180 glimpse 4.720 0.069 5.641 rowwise 4.710 0.050 5.439 select 4.628 0.048 5.334 summarise 4.625 0.051 5.272 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.19-bioc/meat/tidySpatialExperiment.Rcheck/00check.log’ for details.
tidySpatialExperiment.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL tidySpatialExperiment ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘tidySpatialExperiment’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidySpatialExperiment)
tidySpatialExperiment.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(tidySpatialExperiment) Loading required package: SpatialExperiment Loading required package: SingleCellExperiment Loading required package: SummarizedExperiment Loading required package: MatrixGenerics Loading required package: matrixStats Attaching package: 'MatrixGenerics' The following objects are masked from 'package:matrixStats': colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, colCounts, colCummaxs, colCummins, colCumprods, colCumsums, colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, colWeightedMeans, colWeightedMedians, colWeightedSds, colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, rowWeightedMads, rowWeightedMeans, rowWeightedMedians, rowWeightedSds, rowWeightedVars Loading required package: GenomicRanges Loading required package: stats4 Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Attaching package: 'S4Vectors' The following object is masked from 'package:utils': findMatches The following objects are masked from 'package:base': I, expand.grid, unname Loading required package: IRanges Loading required package: GenomeInfoDb Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Attaching package: 'Biobase' The following object is masked from 'package:MatrixGenerics': rowMedians The following objects are masked from 'package:matrixStats': anyMissing, rowMedians Loading required package: tidySingleCellExperiment Attaching package: 'tidySpatialExperiment' The following object is masked from 'package:tidySingleCellExperiment': unnest_single_cell_experiment > > test_check("tidySpatialExperiment") rd10xV> dir <- system.file( rd10xV+ file.path("extdata", "10xVisium"), rd10xV+ package = "SpatialExperiment") rd10xV> sample_ids <- c("section1", "section2") rd10xV> samples <- file.path(dir, sample_ids, "outs") rd10xV> list.files(samples[1]) [1] "raw_feature_bc_matrix" "spatial" rd10xV> list.files(file.path(samples[1], "spatial")) [1] "scalefactors_json.json" "tissue_lowres_image.png" [3] "tissue_positions_list.csv" rd10xV> file.path(samples[1], "raw_feature_bc_matrix") [1] "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/SpatialExperiment/extdata/10xVisium/section1/outs/raw_feature_bc_matrix" rd10xV> (spe <- read10xVisium(samples, sample_ids, rd10xV+ type = "sparse", data = "raw", rd10xV+ images = "lowres", load = FALSE)) # A SpatialExperiment-tibble abstraction: 99 × 7 # [90mFeatures=50 | Cells=99 | Assays=counts[0m .cell in_tissue array_row array_col sample_id pxl_col_in_fullres <chr> <lgl> <int> <int> <chr> <int> 1 AAACAACGAATAGTTC-1 FALSE 0 16 section1 2312 2 AAACAAGTATCTCCCA-1 TRUE 50 102 section1 8230 3 AAACAATCTACTAGCA-1 TRUE 3 43 section1 4170 4 AAACACCAATAACTGC-1 TRUE 59 19 section1 2519 5 AAACAGAGCGACTCCT-1 TRUE 14 94 section1 7679 6 AAACAGCTTTCAGAAG-1 FALSE 43 9 section1 1831 7 AAACAGGGTCTATATT-1 FALSE 47 13 section1 2106 8 AAACAGTGTTCCTGGG-1 FALSE 73 43 section1 4170 9 AAACATGGTGAGAGGA-1 FALSE 62 0 section1 1212 10 AAACATTTCCCGGATT-1 FALSE 61 97 section1 7886 # ℹ 89 more rows # ℹ 1 more variable: pxl_row_in_fullres <int> rd10xV> # base directory 'outs/' from Space Ranger can also be omitted rd10xV> samples2 <- file.path(dir, sample_ids) rd10xV> (spe2 <- read10xVisium(samples2, sample_ids, rd10xV+ type = "sparse", data = "raw", rd10xV+ images = "lowres", load = FALSE)) # A SpatialExperiment-tibble abstraction: 99 × 7 # [90mFeatures=50 | Cells=99 | Assays=counts[0m .cell in_tissue array_row array_col sample_id pxl_col_in_fullres <chr> <lgl> <int> <int> <chr> <int> 1 AAACAACGAATAGTTC-1 FALSE 0 16 section1 2312 2 AAACAAGTATCTCCCA-1 TRUE 50 102 section1 8230 3 AAACAATCTACTAGCA-1 TRUE 3 43 section1 4170 4 AAACACCAATAACTGC-1 TRUE 59 19 section1 2519 5 AAACAGAGCGACTCCT-1 TRUE 14 94 section1 7679 6 AAACAGCTTTCAGAAG-1 FALSE 43 9 section1 1831 7 AAACAGGGTCTATATT-1 FALSE 47 13 section1 2106 8 AAACAGTGTTCCTGGG-1 FALSE 73 43 section1 4170 9 AAACATGGTGAGAGGA-1 FALSE 62 0 section1 1212 10 AAACATTTCCCGGATT-1 FALSE 61 97 section1 7886 # ℹ 89 more rows # ℹ 1 more variable: pxl_row_in_fullres <int> rd10xV> # tabulate number of spots mapped to tissue rd10xV> cd <- colData(spe) rd10xV> table( rd10xV+ in_tissue = cd$in_tissue, rd10xV+ sample_id = cd$sample_id) sample_id in_tissue section1 section2 FALSE 28 27 TRUE 22 22 rd10xV> # view available images rd10xV> imgData(spe) DataFrame with 2 rows and 4 columns sample_id image_id data scaleFactor <character> <character> <list> <numeric> 1 section1 lowres #### 0.0510334 2 section2 lowres #### 0.0510334 rd10xV> dir <- system.file( rd10xV+ file.path("extdata", "10xVisium"), rd10xV+ package = "SpatialExperiment") rd10xV> sample_ids <- c("section1", "section2") rd10xV> samples <- file.path(dir, sample_ids, "outs") rd10xV> list.files(samples[1]) [1] "raw_feature_bc_matrix" "spatial" rd10xV> list.files(file.path(samples[1], "spatial")) [1] "scalefactors_json.json" "tissue_lowres_image.png" [3] "tissue_positions_list.csv" rd10xV> file.path(samples[1], "raw_feature_bc_matrix") [1] "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/SpatialExperiment/extdata/10xVisium/section1/outs/raw_feature_bc_matrix" rd10xV> (spe <- read10xVisium(samples, sample_ids, rd10xV+ type = "sparse", data = "raw", rd10xV+ images = "lowres", load = FALSE)) # A SpatialExperiment-tibble abstraction: 99 × 7 # [90mFeatures=50 | Cells=99 | Assays=counts[0m .cell in_tissue array_row array_col sample_id pxl_col_in_fullres <chr> <lgl> <int> <int> <chr> <int> 1 AAACAACGAATAGTTC-1 FALSE 0 16 section1 2312 2 AAACAAGTATCTCCCA-1 TRUE 50 102 section1 8230 3 AAACAATCTACTAGCA-1 TRUE 3 43 section1 4170 4 AAACACCAATAACTGC-1 TRUE 59 19 section1 2519 5 AAACAGAGCGACTCCT-1 TRUE 14 94 section1 7679 6 AAACAGCTTTCAGAAG-1 FALSE 43 9 section1 1831 7 AAACAGGGTCTATATT-1 FALSE 47 13 section1 2106 8 AAACAGTGTTCCTGGG-1 FALSE 73 43 section1 4170 9 AAACATGGTGAGAGGA-1 FALSE 62 0 section1 1212 10 AAACATTTCCCGGATT-1 FALSE 61 97 section1 7886 # ℹ 89 more rows # ℹ 1 more variable: pxl_row_in_fullres <int> rd10xV> # base directory 'outs/' from Space Ranger can also be omitted rd10xV> samples2 <- file.path(dir, sample_ids) rd10xV> (spe2 <- read10xVisium(samples2, sample_ids, rd10xV+ type = "sparse", data = "raw", rd10xV+ images = "lowres", load = FALSE)) # A SpatialExperiment-tibble abstraction: 99 × 7 # [90mFeatures=50 | Cells=99 | Assays=counts[0m .cell in_tissue array_row array_col sample_id pxl_col_in_fullres <chr> <lgl> <int> <int> <chr> <int> 1 AAACAACGAATAGTTC-1 FALSE 0 16 section1 2312 2 AAACAAGTATCTCCCA-1 TRUE 50 102 section1 8230 3 AAACAATCTACTAGCA-1 TRUE 3 43 section1 4170 4 AAACACCAATAACTGC-1 TRUE 59 19 section1 2519 5 AAACAGAGCGACTCCT-1 TRUE 14 94 section1 7679 6 AAACAGCTTTCAGAAG-1 FALSE 43 9 section1 1831 7 AAACAGGGTCTATATT-1 FALSE 47 13 section1 2106 8 AAACAGTGTTCCTGGG-1 FALSE 73 43 section1 4170 9 AAACATGGTGAGAGGA-1 FALSE 62 0 section1 1212 10 AAACATTTCCCGGATT-1 FALSE 61 97 section1 7886 # ℹ 89 more rows # ℹ 1 more variable: pxl_row_in_fullres <int> rd10xV> # tabulate number of spots mapped to tissue rd10xV> cd <- colData(spe) rd10xV> table( rd10xV+ in_tissue = cd$in_tissue, rd10xV+ sample_id = cd$sample_id) sample_id in_tissue section1 section2 FALSE 28 27 TRUE 22 22 rd10xV> # view available images rd10xV> imgData(spe) DataFrame with 2 rows and 4 columns sample_id image_id data scaleFactor <character> <character> <list> <numeric> 1 section1 lowres #### 0.0510334 2 section2 lowres #### 0.0510334 rd10xV> dir <- system.file( rd10xV+ file.path("extdata", "10xVisium"), rd10xV+ package = "SpatialExperiment") rd10xV> sample_ids <- c("section1", "section2") rd10xV> samples <- file.path(dir, sample_ids, "outs") rd10xV> list.files(samples[1]) [1] "raw_feature_bc_matrix" "spatial" rd10xV> list.files(file.path(samples[1], "spatial")) [1] "scalefactors_json.json" "tissue_lowres_image.png" [3] "tissue_positions_list.csv" rd10xV> file.path(samples[1], "raw_feature_bc_matrix") [1] "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/SpatialExperiment/extdata/10xVisium/section1/outs/raw_feature_bc_matrix" rd10xV> (spe <- read10xVisium(samples, sample_ids, rd10xV+ type = "sparse", data = "raw", rd10xV+ images = "lowres", load = FALSE)) # A SpatialExperiment-tibble abstraction: 99 × 7 # [90mFeatures=50 | Cells=99 | Assays=counts[0m .cell in_tissue array_row array_col sample_id pxl_col_in_fullres <chr> <lgl> <int> <int> <chr> <int> 1 AAACAACGAATAGTTC-1 FALSE 0 16 section1 2312 2 AAACAAGTATCTCCCA-1 TRUE 50 102 section1 8230 3 AAACAATCTACTAGCA-1 TRUE 3 43 section1 4170 4 AAACACCAATAACTGC-1 TRUE 59 19 section1 2519 5 AAACAGAGCGACTCCT-1 TRUE 14 94 section1 7679 6 AAACAGCTTTCAGAAG-1 FALSE 43 9 section1 1831 7 AAACAGGGTCTATATT-1 FALSE 47 13 section1 2106 8 AAACAGTGTTCCTGGG-1 FALSE 73 43 section1 4170 9 AAACATGGTGAGAGGA-1 FALSE 62 0 section1 1212 10 AAACATTTCCCGGATT-1 FALSE 61 97 section1 7886 # ℹ 89 more rows # ℹ 1 more variable: pxl_row_in_fullres <int> rd10xV> # base directory 'outs/' from Space Ranger can also be omitted rd10xV> samples2 <- file.path(dir, sample_ids) rd10xV> (spe2 <- read10xVisium(samples2, sample_ids, rd10xV+ type = "sparse", data = "raw", rd10xV+ images = "lowres", load = FALSE)) # A SpatialExperiment-tibble abstraction: 99 × 7 # [90mFeatures=50 | Cells=99 | Assays=counts[0m .cell in_tissue array_row array_col sample_id pxl_col_in_fullres <chr> <lgl> <int> <int> <chr> <int> 1 AAACAACGAATAGTTC-1 FALSE 0 16 section1 2312 2 AAACAAGTATCTCCCA-1 TRUE 50 102 section1 8230 3 AAACAATCTACTAGCA-1 TRUE 3 43 section1 4170 4 AAACACCAATAACTGC-1 TRUE 59 19 section1 2519 5 AAACAGAGCGACTCCT-1 TRUE 14 94 section1 7679 6 AAACAGCTTTCAGAAG-1 FALSE 43 9 section1 1831 7 AAACAGGGTCTATATT-1 FALSE 47 13 section1 2106 8 AAACAGTGTTCCTGGG-1 FALSE 73 43 section1 4170 9 AAACATGGTGAGAGGA-1 FALSE 62 0 section1 1212 10 AAACATTTCCCGGATT-1 FALSE 61 97 section1 7886 # ℹ 89 more rows # ℹ 1 more variable: pxl_row_in_fullres <int> rd10xV> # tabulate number of spots mapped to tissue rd10xV> cd <- colData(spe) rd10xV> table( rd10xV+ in_tissue = cd$in_tissue, rd10xV+ sample_id = cd$sample_id) sample_id in_tissue section1 section2 FALSE 28 27 TRUE 22 22 rd10xV> # view available images rd10xV> imgData(spe) DataFrame with 2 rows and 4 columns sample_id image_id data scaleFactor <character> <character> <list> <numeric> 1 section1 lowres #### 0.0510334 2 section2 lowres #### 0.0510334 [ FAIL 0 | WARN 3 | SKIP 0 | PASS 38 ] [ FAIL 0 | WARN 3 | SKIP 0 | PASS 38 ] > > proc.time() user system elapsed 47.441 1.844 56.426
tidySpatialExperiment.Rcheck/tidySpatialExperiment-Ex.timings
name | user | system | elapsed | |
aggregate_cells | 10.306 | 0.388 | 11.554 | |
arrange | 4.948 | 0.057 | 5.402 | |
as_tibble | 4.734 | 0.057 | 5.180 | |
bind_cols | 5.095 | 0.080 | 5.668 | |
bind_rows | 5.050 | 0.066 | 5.974 | |
count | 4.993 | 0.059 | 5.437 | |
distinct | 4.745 | 0.054 | 5.376 | |
ellipse | 4.852 | 0.057 | 5.429 | |
extract | 4.847 | 0.055 | 5.272 | |
filter | 5.030 | 0.061 | 5.571 | |
formatting | 4.820 | 0.058 | 5.332 | |
ggplot | 5.048 | 0.068 | 5.634 | |
glimpse | 4.720 | 0.069 | 5.641 | |
group_by | 4.853 | 0.053 | 5.601 | |
inner_join | 5.366 | 0.059 | 6.200 | |
join_features | 5.239 | 0.076 | 6.540 | |
left_join | 5.392 | 0.059 | 6.277 | |
mutate | 4.947 | 0.051 | 5.658 | |
nest | 5.079 | 0.051 | 5.743 | |
pivot_longer | 4.871 | 0.052 | 5.487 | |
plot_ly | 4.958 | 0.121 | 5.658 | |
pull | 4.737 | 0.058 | 5.374 | |
rectangle | 4.853 | 0.052 | 5.488 | |
rename | 5.221 | 0.057 | 5.733 | |
right_join | 6.001 | 0.073 | 6.998 | |
rowwise | 4.710 | 0.050 | 5.439 | |
sample_n | 5.276 | 0.061 | 6.073 | |
select | 4.628 | 0.048 | 5.334 | |
separate | 4.855 | 0.059 | 5.806 | |
slice | 4.805 | 0.049 | 5.498 | |
summarise | 4.625 | 0.051 | 5.272 | |
tbl_format_header | 0.000 | 0.000 | 0.001 | |
unite | 4.899 | 0.052 | 5.503 | |
unnest | 5.341 | 0.052 | 5.986 | |