Back to Long Tests report for BioC 3.19

This page was generated on 2024-03-02 23:55:03 -0500 (Sat, 02 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4676
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4414
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4441
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 6/31HostnameOS / ArchCHECK
biodbChebi 1.9.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-03-02 09:55:01 -0500 (Sat, 02 Mar 2024)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: 6eb1625
git_last_commit_date: 2023-10-24 11:36:37 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK  
palomino3Windows Server 2022 Datacenter / x64  OK  
merida1macOS 12.7.1 Monterey / x86_64  OK  

CHECK results for biodbChebi on merida1


To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbChebi
Version: 1.9.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.9.0.tar.gz
StartedAt: 2024-03-02 16:02:20 -0500 (Sat, 02 Mar 2024)
EndedAt: 2024-03-02 16:06:55 -0500 (Sat, 02 Mar 2024)
EllapsedTime: 275.6 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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Type 'contributors()' for more information and
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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-03-02 16:03:05.818][biodb::testContext]
biodb.INFO [2024-03-02 16:03:05.822][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 16:03:05.823][biodb::testContext] Test context - Generic long tests
biodb.INFO [2024-03-02 16:03:05.825][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 16:03:05.826][biodb::testContext]
biodb.INFO [2024-03-02 16:03:05.834][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.11.0.
biodb.DEBUG[2024-03-02 16:03:05.837][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-02 16:03:06.680][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 16:03:06.681][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-02 16:03:06.683][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-02 16:03:06.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.687][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-02 16:03:06.715][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-02 16:03:06.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.721][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-02 16:03:06.722][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-02 16:03:06.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.727][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-02 16:03:06.729][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-02 16:03:06.730][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-02 16:03:06.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.747][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-02 16:03:06.749][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-02 16:03:06.750][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-02 16:03:06.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.757][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-02 16:03:06.758][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-02 16:03:06.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.764][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-02 16:03:06.765][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-02 16:03:06.767][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-02 16:03:06.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.772][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-02 16:03:06.774][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-02 16:03:06.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.779][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-02 16:03:06.781][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-02 16:03:06.782][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-02 16:03:06.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.788][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-02 16:03:06.789][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-02 16:03:06.791][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-02 16:03:06.792][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-02 16:03:06.803][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-02 16:03:06.804][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-02 16:03:06.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.809][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-02 16:03:06.810][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-02 16:03:06.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.814][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-02 16:03:06.816][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-02 16:03:06.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.820][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-02 16:03:06.821][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-02 16:03:06.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.825][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-02 16:03:06.827][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-02 16:03:06.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.834][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-02 16:03:06.857][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-02 16:03:06.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:06.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:06.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:06.861][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-02 16:03:06.863][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-02 16:03:07.769][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-02 16:03:07.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:07.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:07.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:07.773][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-02 16:03:07.775][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-02 16:03:07.776][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-02 16:03:07.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:07.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:07.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:07.783][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-02 16:03:07.823][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:07.843][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-02 16:03:07.844][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.846][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 16:03:07.847][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.848][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 16:03:07.849][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:07.850][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 16:03:07.851][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 16:03:07.853][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 16:03:07.854][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.855][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-02 16:03:07.856][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 16:03:07.857][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.858][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.860][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 16:03:07.860][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 16:03:07.860][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 16:03:07.860][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 16:03:07.860][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 16:03:07.861][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 16:03:07.862][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 16:03:07.863][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 16:03:07.864][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 16:03:07.865][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 16:03:07.866][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 16:03:07.867][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 16:03:07.869][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.870][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 16:03:07.871][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 16:03:07.872][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:07.873][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.874][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-02 16:03:07.877][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:07.878][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 16:03:07.879][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.880][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 16:03:07.881][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.882][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 16:03:07.884][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:07.885][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 16:03:07.886][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 16:03:07.887][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 16:03:07.888][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.889][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-02 16:03:07.891][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 16:03:07.892][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.893][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.894][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 16:03:07.894][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 16:03:07.894][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 16:03:07.894][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 16:03:07.894][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 16:03:07.895][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 16:03:07.896][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 16:03:07.898][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 16:03:07.899][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 16:03:07.900][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 16:03:07.901][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 16:03:07.902][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 16:03:07.903][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.904][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 16:03:07.905][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 16:03:07.906][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:07.908][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.909][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-02 16:03:07.911][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.912][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-02 16:03:07.913][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.915][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 16:03:07.916][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.917][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 16:03:07.920][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:07.921][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 16:03:07.922][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 16:03:07.924][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 16:03:07.925][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:07.926][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-02 16:03:07.927][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 16:03:07.928][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.930][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.931][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.932][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 16:03:07.933][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 16:03:07.934][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 16:03:07.936][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 16:03:07.937][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 16:03:07.938][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 16:03:07.939][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 16:03:07.940][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.941][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 16:03:07.942][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 16:03:07.944][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:07.945][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.946][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-02 16:03:07.948][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.950][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 16:03:07.951][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.952][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 16:03:07.953][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.954][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 16:03:07.956][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:07.957][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 16:03:07.958][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 16:03:07.959][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 16:03:07.961][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:07.962][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-02 16:03:07.963][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 16:03:07.964][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.965][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:07.967][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.968][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 16:03:07.969][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 16:03:07.970][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 16:03:07.971][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 16:03:07.972][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 16:03:07.974][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 16:03:07.975][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 16:03:07.976][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.977][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 16:03:07.978][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 16:03:07.980][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:07.981][self$setPropertyValue]
biodb.DEBUG[2024-03-02 16:03:07.990][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 16:03:07.991][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:07.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:07.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:07.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:07.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:07.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:07.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:07.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.085][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-02 16:03:08.090][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-02 16:03:08.091][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-02 16:03:08.093][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-02 16:03:08.096][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-02 16:03:08.097][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-02 16:03:08.099][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-02 16:03:08.103][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-02 16:03:08.105][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-02 16:03:08.106][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-02 16:03:08.108][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-02 16:03:08.109][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-02 16:03:08.111][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-02 16:03:08.113][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-02 16:03:08.114][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-02 16:03:08.116][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 16:03:08.118][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-02 16:03:08.119][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-02 16:03:08.121][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-02 16:03:08.123][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-02 16:03:08.124][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-02 16:03:08.126][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-02 16:03:08.128][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-02 16:03:08.129][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-02 16:03:08.131][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-02 16:03:08.133][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-02 16:03:08.134][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-02 16:03:08.136][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-02 16:03:08.138][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-02 16:03:08.139][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-02 16:03:08.141][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-02 16:03:08.143][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-02 16:03:08.144][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-02 16:03:08.146][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-02 16:03:08.148][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-02 16:03:08.149][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-02 16:03:08.151][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-02 16:03:08.153][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-02 16:03:08.156][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-02 16:03:08.158][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-02 16:03:08.159][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-02 16:03:08.161][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-02 16:03:08.163][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-02 16:03:08.164][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-02 16:03:08.166][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-02 16:03:08.167][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-02 16:03:08.169][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-02 16:03:08.171][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-02 16:03:08.172][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-02 16:03:08.174][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-02 16:03:08.176][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-02 16:03:08.177][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-02 16:03:08.179][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-02 16:03:08.180][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-02 16:03:08.182][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-02 16:03:08.184][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-02 16:03:08.185][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-02 16:03:08.187][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-02 16:03:08.189][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-02 16:03:08.190][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-02 16:03:08.192][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-02 16:03:08.193][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-02 16:03:08.195][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-02 16:03:08.197][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-02 16:03:08.198][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-02 16:03:08.200][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-02 16:03:08.202][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-02 16:03:08.203][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-02 16:03:08.205][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-02 16:03:08.207][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-02 16:03:08.210][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-02 16:03:08.212][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-02 16:03:08.213][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-02 16:03:08.216][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-02 16:03:08.218][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-02 16:03:08.220][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-02 16:03:08.221][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-02 16:03:08.223][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-02 16:03:08.225][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-02 16:03:08.226][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-02 16:03:08.228][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-02 16:03:08.230][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-02 16:03:08.231][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-02 16:03:08.239][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-02 16:03:08.241][initialize] This is biodb version 1.11.0.
biodb.DEBUG[2024-03-02 16:03:08.245][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 16:03:08.250][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.252][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 16:03:08.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:08.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:08.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:08.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:08.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:08.408][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2024-03-02 16:03:08.420][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-03-02 16:03:08.423][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:08.424][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-02 16:03:08.425][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:08.427][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 16:03:08.428][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:08.429][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 16:03:08.430][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:08.431][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-03-02 16:03:08.432][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 16:03:08.434][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 16:03:08.435][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:08.436][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-03-02 16:03:08.437][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 16:03:08.439][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-03-02 16:03:08.439][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-03-02 16:03:08.439][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-03-02 16:03:08.439][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-03-02 16:03:08.439][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-03-02 16:03:08.439][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-03-02 16:03:08.439][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-03-02 16:03:08.439][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-03-02 16:03:08.439][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-03-02 16:03:08.439][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-03-02 16:03:08.439][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-03-02 16:03:08.440][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 16:03:08.442][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 16:03:08.442][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 16:03:08.442][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 16:03:08.443][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-02 16:03:08.444][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 16:03:08.445][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 16:03:08.446][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 16:03:08.448][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 16:03:08.450][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 16:03:08.452][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 16:03:08.453][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:08.453][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-03-02 16:03:08.454][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 16:03:08.455][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 16:03:08.456][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 16:03:08.458][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-03-02 16:03:08.458][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-03-02 16:03:08.465][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-02 16:03:08.467][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-02 16:03:08.469][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-03-02 16:03:08.471][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-02 16:03:08.473][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-02 16:03:08.474][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-02 16:03:08.498][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-03-02 16:03:08.500][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-03-02 16:03:08.505][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-03-02 16:03:08.510][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-03-02 16:03:08.515][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 16:03:08.516][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 16:03:08.517][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-03-02 16:03:08.519][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-03-02 16:03:08.530][biodb::testThat]
biodb.INFO [2024-03-02 16:03:08.538][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-03-02 16:03:08.539][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:03:08.540][biodb::testThat]
biodb.TRACE[2024-03-02 16:03:08.544][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-03-02 16:03:08.546][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:08.549][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:08.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:08.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:08.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:09.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:09.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:09.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:09.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:09.573][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:09.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:09.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.577][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:09.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:09.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.599][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:09.600][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:09.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.605][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.639][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:09.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:09.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.644][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:09.645][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:09.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.648][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:09.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:09.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:09.655][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:09.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.658][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:09.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:09.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.666][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:09.667][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:09.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.672][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:09.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:09.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.678][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:09.680][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:09.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.682][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.683][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:09.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:09.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.688][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:09.689][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:09.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.692][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.693][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:09.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:09.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:09.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:09.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.702][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:09.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:09.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.708][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:09.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:09.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.712][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:09.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:09.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.718][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:09.719][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:09.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.722][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:09.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:09.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.728][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:09.729][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:09.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:09.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:09.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:09.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:09.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:09.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:09.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:09.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:09.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:09.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:09.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:09.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:09.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:09.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:09.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:09.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:09.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:09.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:09.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:09.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:09.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:09.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:09.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:09.838][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-03-02 16:03:09.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:09.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:09.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:09.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:09.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:09.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:09.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:09.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:09.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:09.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:09.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:09.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:09.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 16:03:09.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 16:03:09.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.907][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 16:03:09.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 16:03:09.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 16:03:09.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 16:03:09.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:09.917][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 16:03:09.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 16:03:09.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:09.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:10.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:10.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:10.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:10.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:10.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:10.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:10.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:10.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:10.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:10.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:10.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:10.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:10.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:10.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:10.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:10.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:10.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:10.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:10.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:10.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.330][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:10.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:10.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.334][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:10.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:10.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.375][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:10.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:10.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:10.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:10.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:10.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:10.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:10.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.408][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:10.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:10.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.411][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:10.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:10.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:10.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:10.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:10.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:10.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.438][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:10.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:10.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.443][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:10.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:10.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.447][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:10.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:10.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:10.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:10.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:10.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:10.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:10.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:10.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.482][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:10.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:10.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.485][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:10.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:10.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:10.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:10.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:10.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:10.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:10.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:10.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.522][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:10.523][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:10.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.525][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:10.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:10.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.547][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:10.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:10.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.551][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:10.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.557][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:10.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:10.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.563][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:10.567][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:10.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.569][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.570][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:10.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:10.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.586][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:10.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:10.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.591][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:10.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:10.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.596][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:10.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:10.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.601][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:10.603][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:10.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.605][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.606][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:10.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:10.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.621][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:10.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:10.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.626][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:10.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:10.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.631][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:10.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:10.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.637][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:10.639][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:10.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.641][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.642][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:10.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:10.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:10.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:10.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:10.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:10.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:10.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:10.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.695][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:10.697][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:10.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.701][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:10.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:10.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:10.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:10.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:10.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:10.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:10.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:10.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.732][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:10.733][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:10.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.735][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:10.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:10.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:10.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:10.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:10.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:10.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:10.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:10.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:10.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:10.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.778][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:10.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:10.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.795][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:10.796][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:10.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.798][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.804][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:10.806][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:10.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.809][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.814][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:10.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:10.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.818][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:10.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:10.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.829][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:10.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:10.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.839][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.845][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:10.847][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:10.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.849][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.855][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:10.856][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:10.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.858][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.865][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:10.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:10.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.868][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.874][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:10.875][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:10.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.878][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.911][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:10.912][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:10.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.914][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.921][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:10.923][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:10.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:10.925][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:10.947][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2024-03-02 16:03:10.998][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:11.000][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:11.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:11.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:11.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:11.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:11.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:11.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:11.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:11.016][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.019][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.053][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:11.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:11.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.057][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:11.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:11.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.064][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:11.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:11.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:11.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:11.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.075][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:11.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:11.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.079][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:11.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:11.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.086][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:11.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:11.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.090][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:11.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.096][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:11.097][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:11.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.099][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.101][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:11.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:11.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.106][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:11.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:11.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.109][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.111][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:11.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:11.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.116][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:11.117][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:11.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.119][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:11.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:11.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.125][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:11.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:11.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.129][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:11.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:11.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.136][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:11.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:11.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.141][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.142][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:11.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:11.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.149][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:11.151][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:11.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.153][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.155][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:11.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:11.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:11.215][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2024-03-02 16:03:11.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:11.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:11.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:11.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:11.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:11.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:11.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:11.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:11.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:11.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:11.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:11.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.278][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 16:03:11.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 16:03:11.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.283][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 16:03:11.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 16:03:11.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.288][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 16:03:11.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 16:03:11.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.292][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 16:03:11.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 16:03:11.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.781][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.784][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:11.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:11.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.821][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:11.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:11.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:11.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:11.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:11.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:11.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:11.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.857][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:11.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:11.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.861][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:11.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:11.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:11.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:11.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:11.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:11.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:11.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:11.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.914][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:11.916][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:11.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.918][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:11.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:11.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.943][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:11.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:11.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:11.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:11.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:11.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:11.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.957][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:11.958][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:11.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.960][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.961][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:11.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:11.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:11.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:11.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:11.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:11.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:11.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:11.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:11.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:11.998][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:11.999][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:12.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.001][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:12.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:12.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.031][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.032][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.035][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:12.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:12.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.063][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:12.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.069][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:12.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:12.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.077][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:12.078][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:12.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.080][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.084][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:12.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:12.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.099][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.114][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.115][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.117][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.119][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.139][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.143][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.148][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.153][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.154][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.157][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:12.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:12.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:12.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:12.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:12.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:12.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:12.196][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:12.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.198][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:12.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:12.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.230][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.231][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.233][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.271][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.277][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.293][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.297][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.302][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:12.304][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:12.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.306][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.312][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:12.313][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:12.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.315][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.321][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.322][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.325][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.334][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.339][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.340][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.343][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.348][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.352][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:12.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:12.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.366][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.372][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.373][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.381][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.388][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:12.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:12.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.393][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:12.401][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:12.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.404][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.412][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2024-03-02 16:03:12.413][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:12.415][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:12.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:12.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:12.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:12.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:12.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:12.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:12.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:12.430][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.432][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.434][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.442][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:12.446][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:12.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.449][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.450][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:12.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:12.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.456][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:12.457][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:12.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.460][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.462][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:12.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:12.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.468][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.472][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.478][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.480][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.482][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.489][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.491][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.494][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.496][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.501][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:12.503][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.505][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.506][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:12.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:12.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:12.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.515][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:12.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:12.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.523][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:12.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:12.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.529][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:12.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:12.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.539][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:12.541][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.543][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.544][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:12.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:12.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.549][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:12.551][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:12.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.553][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:12.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:12.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:12.610][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2024-03-02 16:03:12.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:12.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 16:03:12.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 16:03:12.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.658][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 16:03:12.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 16:03:12.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.663][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 16:03:12.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 16:03:12.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.670][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 16:03:12.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 16:03:12.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:12.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.838][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.839][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.844][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:12.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:12.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:12.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:12.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:12.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:12.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:12.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:12.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.877][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:12.878][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:12.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.881][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:12.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:12.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.912][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.913][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.916][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:12.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:12.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.956][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.957][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.961][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:12.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.979][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.983][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.988][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.993][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.994][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:12.996][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:12.997][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:12.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:13.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:13.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:13.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:13.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:13.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:13.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:13.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.031][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:13.032][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:13.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.034][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:13.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:13.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:13.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:13.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:13.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:13.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:13.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:13.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.078][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:13.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:13.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.081][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:13.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:13.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:13.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:13.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.106][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:13.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:13.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.113][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:13.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:13.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.118][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:13.120][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:13.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.122][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:13.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:13.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.139][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:13.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:13.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.145][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:13.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:13.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.151][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:13.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:13.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.156][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:13.158][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:13.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.161][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.162][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:13.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:13.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:13.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:13.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:13.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:13.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:13.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:13.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.208][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:13.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:13.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.216][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:13.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:13.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:13.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:13.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:13.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:13.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.248][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:13.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:13.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.251][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:13.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:13.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.294][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:13.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:13.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.298][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.304][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:13.305][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:13.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.309][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.319][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:13.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:13.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.323][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.329][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:13.330][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:13.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.332][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:13.340][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:13.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.342][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.348][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:13.351][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:13.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.353][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.383][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:13.385][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:13.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.387][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.398][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:13.401][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:13.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.403][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.409][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:03:13.413][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:13.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.415][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.424][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:13.425][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:13.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.427][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:13.435][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:13.436][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:13.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:13.438][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 16:03:13.450][biodb::testThat]
biodb.INFO [2024-03-02 16:03:13.451][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-03-02 16:03:13.453][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:03:13.454][biodb::testThat]
biodb.DEBUG[2024-03-02 16:03:13.457][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2024-03-02 16:03:13.465][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-03-02 16:03:13.581][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.INFO [2024-03-02 16:03:13.587][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649" for "chebi-0c5076ac2a43d16dbce503a44b09f649".
biodb.TRACE[2024-03-02 16:03:13.589][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-03-02 16:03:13.590][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:13.591][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:13.593][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:13.594][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:13.595][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:13.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:13.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:13.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:13.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:13.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:13.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:13.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:13.656][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2024-03-02 16:03:13.687][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:13.688][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:13.689][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2024-03-02 16:03:20.412][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2024-03-02 16:03:20.876][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:20.879][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2024-03-02 16:03:21.136][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.DEBUG[2024-03-02 16:03:21.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:21.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:21.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:21.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:21.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:21.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:21.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:21.469][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.DEBUG[2024-03-02 16:03:21.488][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:21.490][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:21.509][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.TRACE[2024-03-02 16:03:21.878][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
biodb.DEBUG[2024-03-02 16:03:22.248][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:22.250][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.content"
biodb.TRACE[2024-03-02 16:03:22.427][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.request"
biodb.DEBUG[2024-03-02 16:03:22.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:22.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:22.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:22.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:22.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:22.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:22.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:22.482][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.DEBUG[2024-03-02 16:03:22.490][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:22.492][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:22.493][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.TRACE[2024-03-02 16:03:22.864][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
biodb.DEBUG[2024-03-02 16:03:23.233][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:23.236][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.content"
biodb.TRACE[2024-03-02 16:03:23.317][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.request"
biodb.TRACE[2024-03-02 16:03:23.321][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml"
biodb.DEBUG[2024-03-02 16:03:23.853][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:23.855][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-03-02 16:03:23.856][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:23.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:23.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:23.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:23.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:23.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:23.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:23.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:23.898][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:23.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:23.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.902][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:23.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:23.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.909][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:23.910][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:23.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.912][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.914][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:23.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:23.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.919][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:23.920][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:23.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.923][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:23.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:23.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:23.931][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:23.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.933][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:23.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:23.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:23.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:23.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.969][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:23.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:23.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.975][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:23.976][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:23.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.979][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.980][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:23.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:23.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.986][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:23.987][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:23.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.989][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.991][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:23.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:23.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:23.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:23.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:23.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:23.999][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:24.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:24.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.005][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:24.007][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:24.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.009][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:24.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:24.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.015][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:24.017][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:24.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.043][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:24.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:24.051][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:24.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.053][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:24.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:24.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:24.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:24.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:24.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:24.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:24.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:24.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:24.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:24.125][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.129][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.136][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:24.137][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:24.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.140][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.141][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:24.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:24.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.147][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:24.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:24.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.152][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:24.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:24.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:24.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:24.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.162][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:24.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:24.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:24.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:24.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.172][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:24.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:24.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.186][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:24.188][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:24.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.190][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.195][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:24.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:24.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.202][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:24.203][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:24.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.210][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.212][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:24.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:24.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:24.218][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:24.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.221][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:24.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:24.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.227][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:24.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:24.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:24.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:24.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.239][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:24.241][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:24.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.244][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:24.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:24.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.250][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:24.251][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:24.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.254][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:24.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:24.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:24.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:24.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:24.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:24.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:24.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:24.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:24.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:24.332][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.333][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.335][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.342][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:24.344][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:24.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.346][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.348][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:24.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:24.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.366][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:24.367][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:24.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.369][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:24.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:24.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.376][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:24.377][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:24.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.379][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:24.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:24.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.385][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:24.387][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:24.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.389][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:24.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:24.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.396][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:24.397][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:24.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.400][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.401][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:24.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:24.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.406][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:24.412][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:24.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.414][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.415][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:24.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:24.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:24.423][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:24.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.425][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:24.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:24.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.434][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:24.438][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:24.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.440][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:24.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:24.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.447][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:24.448][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:24.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.451][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.452][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:24.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.458][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:24.459][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:24.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.462][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:24.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:24.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:24.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:24.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:24.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:24.557][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2024-03-02 16:03:24.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 16:03:24.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 16:03:24.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 16:03:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 16:03:24.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 16:03:24.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 16:03:24.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 16:03:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 16:03:24.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 16:03:24.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 16:03:24.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 16:03:24.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 16:03:24.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 16:03:24.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 16:03:24.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 16:03:24.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 16:03:24.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 16:03:24.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 16:03:24.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 16:03:24.635][biodb::testThat]
biodb.INFO [2024-03-02 16:03:24.637][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-03-02 16:03:24.638][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:03:24.639][biodb::testThat]
biodb.TRACE[2024-03-02 16:03:24.642][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:24.644][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:24.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.646][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:24.648][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-03-02 16:03:24.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:24.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:24.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:24.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:24.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:24.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:24.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:24.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:24.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:24.718][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-03-02 16:03:24.721][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-03-02 16:03:24.725][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:24.726][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:24.728][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.TRACE[2024-03-02 16:03:25.095][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl).
biodb.DEBUG[2024-03-02 16:03:25.556][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:25.559][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content"
biodb.TRACE[2024-03-02 16:03:25.854][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.request"
biodb.DEBUG[2024-03-02 16:03:26.138][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:03:26.148][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:26.149][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:26.152][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:03:26.654][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:03:27.155][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:27.162][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2024-03-02 16:03:27.337][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2024-03-02 16:03:27.417][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-03-02 16:03:27.435][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:27.436][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:27.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.439][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.440][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:27.441][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:27.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.444][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 16:03:27.449][biodb::testThat]
biodb.INFO [2024-03-02 16:03:27.450][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-03-02 16:03:27.451][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:03:27.452][biodb::testThat]
biodb.TRACE[2024-03-02 16:03:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:27.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:27.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:27.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:27.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:27.587][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:03:27.591][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:03:27.611][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-02 16:03:27.613][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:03:27.615][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-03-02 16:03:27.655][biodb::testThat]
biodb.INFO [2024-03-02 16:03:27.656][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-03-02 16:03:27.658][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:03:27.659][biodb::testThat]
biodb.TRACE[2024-03-02 16:03:27.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:27.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:27.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:27.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:27.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:27.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:27.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:27.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:27.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:27.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:27.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:27.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:27.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.722][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 16:03:27.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 16:03:27.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.727][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 16:03:27.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 16:03:27.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 16:03:27.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 16:03:27.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 16:03:27.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 16:03:27.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:27.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:27.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:27.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:27.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:27.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:27.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:27.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:27.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:27.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:27.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:27.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:27.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 16:03:27.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 16:03:27.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.815][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 16:03:27.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 16:03:27.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 16:03:27.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 16:03:27.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:27.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 16:03:27.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 16:03:27.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:27.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 16:03:27.999][biodb::testThat]
biodb.INFO [2024-03-02 16:03:28.001][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-03-02 16:03:28.002][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:03:28.003][biodb::testThat]
biodb.INFO [2024-03-02 16:03:28.018][biodb::testThat]
biodb.INFO [2024-03-02 16:03:28.020][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-03-02 16:03:28.021][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:03:28.022][biodb::testThat]
biodb.INFO [2024-03-02 16:03:28.042][biodb::testThat]
biodb.INFO [2024-03-02 16:03:28.045][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-03-02 16:03:28.046][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:03:28.048][biodb::testThat]
biodb.DEBUG[2024-03-02 16:03:28.052][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-03-02 16:03:28.574][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-03-02 16:03:29.417][biodb::testThat]
biodb.INFO [2024-03-02 16:03:29.418][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-03-02 16:03:29.420][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:03:29.421][biodb::testThat]
biodb.DEBUG[2024-03-02 16:03:29.831][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-03-02 16:03:30.265][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:30.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:30.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:30.268][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:30.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:30.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:30.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:30.273][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 16:03:30.275][biodb::testThat]
biodb.INFO [2024-03-02 16:03:30.276][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-03-02 16:03:30.278][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:03:30.279][biodb::testThat]
biodb.TRACE[2024-03-02 16:03:30.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:30.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:30.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:30.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:30.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:30.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:30.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:30.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:30.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:30.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:30.410][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:03:30.414][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:03:30.420][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-02 16:03:30.422][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:03:30.432][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-03-02 16:03:30.511][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:03:30.515][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:03:30.516][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-02 16:03:30.518][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:03:30.520][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-03-02 16:03:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:03:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:03:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:30.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:30.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:30.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:30.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:30.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:30.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:30.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:30.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:30.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:30.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:30.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:30.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:30.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:30.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:30.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:30.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:30.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:30.611][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:03:30.636][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:30.657][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:30.660][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:03:31.031][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:03:31.404][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:31.408][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content"
biodb.TRACE[2024-03-02 16:03:31.455][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.request"
biodb.DEBUG[2024-03-02 16:03:31.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:31.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:31.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:31.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:31.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:31.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:31.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:31.505][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-03-02 16:03:31.566][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:31.568][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-03-02 16:03:31.569][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:31.571][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:31.572][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:31.573][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:31.574][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:31.575][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:31.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:31.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:31.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:31.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:31.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:31.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:31.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:31.633][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2024-03-02 16:03:31.637][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:31.638][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:31.640][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2024-03-02 16:03:32.011][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2024-03-02 16:03:32.381][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:32.396][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2024-03-02 16:03:32.401][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2024-03-02 16:03:32.404][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2024-03-02 16:03:32.406][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:32.408][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:32.409][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:32.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:32.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:32.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:32.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:32.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:32.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:32.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:32.426][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:32.427][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:32.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.430][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:32.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:32.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.438][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:32.439][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:32.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.441][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.443][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:32.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:32.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.448][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:32.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:32.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.451][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:32.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:32.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.458][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:32.460][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:32.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.462][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:32.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:32.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.469][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:32.470][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:32.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.472][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:32.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:32.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.479][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:32.480][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:32.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.482][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.484][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:32.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:32.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.487][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.489][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:32.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:32.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.494][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:32.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:32.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.497][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:32.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:32.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.505][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:32.506][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:32.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.511][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:32.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:32.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.518][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:32.520][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:32.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.522][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.524][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:32.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:32.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.529][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:32.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:32.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.533][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:32.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:32.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:32.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:32.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:32.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:32.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:32.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:32.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:32.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:32.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:32.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:32.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:32.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:32.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:32.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:32.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:32.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:32.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:32.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:32.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:32.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:32.598][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-03-02 16:03:32.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:32.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:32.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:32.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:32.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:32.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:32.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:32.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:32.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:32.630][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:03:32.634][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:32.635][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:32.638][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:03:33.013][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:03:33.384][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:33.387][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content"
biodb.TRACE[2024-03-02 16:03:33.392][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.request"
biodb.DEBUG[2024-03-02 16:03:33.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:33.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:33.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:33.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:33.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:33.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:33.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:33.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:33.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:33.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:33.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:33.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:33.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:33.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:33.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:33.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:33.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:33.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:33.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:33.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:33.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:33.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:33.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:33.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:33.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:33.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:33.457][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-03-02 16:03:33.459][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:33.461][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-03-02 16:03:33.462][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:33.463][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:33.465][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:33.466][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:33.468][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:33.469][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:33.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:33.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:33.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:33.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:33.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:33.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:33.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:33.494][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2024-03-02 16:03:33.498][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:33.499][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:33.500][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2024-03-02 16:03:33.872][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2024-03-02 16:03:34.241][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:34.244][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2024-03-02 16:03:34.290][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2024-03-02 16:03:34.321][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2024-03-02 16:03:34.349][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:34.354][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:34.355][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:34.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:34.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:34.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:34.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:34.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:34.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:34.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:34.371][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:34.373][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:34.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.375][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:34.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:34.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.381][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:34.383][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:34.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.385][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.387][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:34.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:34.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.392][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:34.393][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:34.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.396][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:34.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:34.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:34.404][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:34.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.406][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:34.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:34.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.417][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:34.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:34.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.420][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:34.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:34.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.427][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:34.428][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:34.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.430][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.432][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:34.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.435][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.437][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:34.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.442][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:34.443][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:34.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.445][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:34.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:34.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.451][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:34.453][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:34.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.455][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:34.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.462][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:34.463][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:34.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.466][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.468][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:34.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:34.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.474][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:34.475][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:34.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.480][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:34.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:34.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:34.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:34.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:34.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:34.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:34.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:34.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:34.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:34.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:34.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:34.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:34.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:34.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:34.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:34.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:34.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:34.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:34.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:34.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:34.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:34.545][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-03-02 16:03:34.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:34.583][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:03:34.587][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:03:34.588][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-02 16:03:34.590][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:03:34.593][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-03-02 16:03:34.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:34.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:34.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:34.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:34.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:34.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:34.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:34.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:34.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:34.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:34.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:34.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:34.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:34.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:34.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:34.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:34.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:34.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:34.640][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-03-02 16:03:34.641][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:34.643][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-03-02 16:03:34.645][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:34.646][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:34.647][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:34.648][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:34.652][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:34.653][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:34.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:34.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:34.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:34.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:34.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:34.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:34.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:34.693][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2024-03-02 16:03:34.697][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:34.698][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:34.699][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2024-03-02 16:03:35.068][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2024-03-02 16:03:35.444][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:35.447][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2024-03-02 16:03:35.500][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2024-03-02 16:03:35.662][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2024-03-02 16:03:35.664][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:35.666][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:35.667][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:35.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:35.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:35.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:35.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:35.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:35.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:35.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:35.687][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:35.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:35.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.691][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:35.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:35.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.697][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:35.698][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:35.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.701][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.702][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:35.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:35.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.706][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:35.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:35.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.711][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.713][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:35.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:35.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.718][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:35.719][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:35.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.721][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.723][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:35.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:35.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.726][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.728][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:35.729][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:35.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.731][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.733][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:35.734][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:35.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.736][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:35.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:35.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.746][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:35.748][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:35.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.750][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.751][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:35.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:35.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.756][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:35.757][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:35.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.760][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:35.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:35.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:35.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:35.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:35.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:35.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:35.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:35.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:35.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:35.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:35.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:35.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:35.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:35.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:35.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:35.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:35.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:35.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:35.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:35.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:35.819][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-03-02 16:03:35.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:35.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:35.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:35.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:35.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:35.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:35.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:35.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:35.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:35.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:35.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:35.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:35.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:35.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:35.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:35.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:35.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:35.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:35.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:35.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:35.857][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-03-02 16:03:35.859][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:35.860][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-03-02 16:03:35.862][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:35.866][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:35.867][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:35.868][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:35.870][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:35.871][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:35.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:35.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:35.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:35.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:35.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:35.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:35.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:35.899][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2024-03-02 16:03:35.902][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:35.903][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:35.905][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2024-03-02 16:03:36.283][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2024-03-02 16:03:36.653][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:36.655][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2024-03-02 16:03:37.018][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2024-03-02 16:03:37.183][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2024-03-02 16:03:37.231][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:37.233][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:37.234][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:37.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:37.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:37.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:37.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:37.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:37.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:37.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:37.251][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:37.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:37.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.255][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:37.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:37.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.261][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:37.263][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:37.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.265][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.267][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:37.268][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:37.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.274][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:37.278][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:37.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.281][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.283][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:37.284][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:37.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.287][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.288][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:37.290][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:37.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.292][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.293][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:37.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:37.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.297][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.298][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:37.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:37.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.302][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.308][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:37.312][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:37.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.314][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:37.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:37.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.322][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:37.323][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:37.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.325][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:37.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:37.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.338][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:37.339][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:37.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.342][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:37.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:37.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:37.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:37.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:37.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:37.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:37.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:37.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:37.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:37.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:37.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:37.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:37.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:37.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:37.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:37.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:37.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:37.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:37.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:37.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:37.410][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-03-02 16:03:37.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:37.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:37.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:37.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:37.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:37.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:37.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:37.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:37.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:37.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:37.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:37.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:37.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:37.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:37.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:37.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:37.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:37.451][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-03-02 16:03:37.452][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:37.454][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-03-02 16:03:37.455][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:37.457][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:37.458][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:37.459][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:37.461][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:37.462][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:37.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:37.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:37.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:37.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:37.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:37.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:37.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:37.490][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2024-03-02 16:03:37.493][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:37.494][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:37.496][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2024-03-02 16:03:37.870][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2024-03-02 16:03:38.240][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:38.243][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2024-03-02 16:03:38.416][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2024-03-02 16:03:38.420][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2024-03-02 16:03:38.422][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:38.424][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:38.425][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:38.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:38.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:38.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:38.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:38.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:38.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:38.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:38.446][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:38.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:38.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.450][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:38.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:38.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.457][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:38.458][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:38.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.460][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.462][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:38.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:38.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.465][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.467][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:38.468][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:38.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.470][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.472][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:38.473][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:38.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.476][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.477][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:38.479][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:38.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.481][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.482][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:38.484][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:38.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.486][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.487][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:38.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:38.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.491][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.493][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:38.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:38.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.497][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:38.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.504][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:38.505][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:38.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.508][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.509][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:38.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:38.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.515][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:38.516][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:38.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.519][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:38.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:38.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:38.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:38.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:38.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:38.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:38.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:38.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:38.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:38.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:38.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:38.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:38.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:38.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:38.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:38.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:38.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:38.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:38.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:38.571][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-03-02 16:03:38.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:38.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:38.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:38.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:38.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:38.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:38.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:38.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:38.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:38.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:38.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:38.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:38.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:38.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:38.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:38.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:38.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:38.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:38.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:38.616][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-03-02 16:03:38.617][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:38.620][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-03-02 16:03:38.621][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:38.623][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:38.625][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:38.626][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:38.627][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:38.630][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:38.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:38.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:38.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:38.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:38.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:38.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:38.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:38.648][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2024-03-02 16:03:38.651][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:38.653][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:38.654][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2024-03-02 16:03:39.030][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2024-03-02 16:03:39.404][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:39.407][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2024-03-02 16:03:39.411][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2024-03-02 16:03:39.506][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2024-03-02 16:03:39.632][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:39.634][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:39.635][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:39.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:39.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:39.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:39.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:39.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:39.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:39.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:39.651][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:39.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:39.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.655][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:39.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:39.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.661][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:39.662][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:39.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.665][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:39.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:39.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.671][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:39.672][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:39.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.675][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:39.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:39.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:39.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.685][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:39.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:39.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.692][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:39.693][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:39.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.695][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:39.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:39.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.702][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:39.703][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:39.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.705][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.707][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:39.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:39.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.712][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:39.717][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:39.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.722][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.724][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:39.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:39.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:39.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:39.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:39.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:39.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.739][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:39.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:39.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.742][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:39.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:39.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.749][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:39.750][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:39.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.753][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.754][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:39.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:39.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.759][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:39.760][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:39.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.763][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:39.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:39.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:39.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:39.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:39.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:39.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:39.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:39.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:39.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:39.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:39.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:39.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:39.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:39.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:39.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:39.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:39.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:39.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:39.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:39.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:39.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:39.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:39.818][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-03-02 16:03:39.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:39.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:39.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:39.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:39.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:39.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:39.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:39.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:39.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:39.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:39.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:39.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:39.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:39.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:39.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:39.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:39.846][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-03-02 16:03:39.847][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:39.849][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-03-02 16:03:39.851][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:39.852][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:39.853][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:39.854][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:39.856][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:39.857][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:39.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:39.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:39.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:39.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:39.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:39.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:39.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:39.873][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2024-03-02 16:03:39.881][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:39.882][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:39.884][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2024-03-02 16:03:40.259][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2024-03-02 16:03:40.632][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:40.634][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2024-03-02 16:03:40.639][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2024-03-02 16:03:40.642][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2024-03-02 16:03:40.644][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:40.645][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:40.646][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:40.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:40.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:40.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:40.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:40.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:40.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:40.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:40.663][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:40.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:40.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.666][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:40.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:40.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.673][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:40.674][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:40.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.676][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.678][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:40.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:40.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.683][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:40.684][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:40.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.686][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:40.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:40.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.693][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:40.694][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:40.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.696][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.703][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:40.704][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:40.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.706][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:40.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:40.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.713][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:40.714][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:40.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.718][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:40.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:40.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.723][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:40.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:40.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.726][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.728][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:40.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:40.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.733][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:40.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:40.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.736][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:40.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.743][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:40.744][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:40.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.746][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:40.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:40.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.753][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:40.754][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:40.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.756][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.758][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:40.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:40.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.763][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:40.764][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:40.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.766][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:40.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:40.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:40.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:40.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:40.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:40.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:40.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:40.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:40.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:40.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:40.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:40.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:40.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:40.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:40.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:40.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:40.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:40.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:40.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:40.829][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-03-02 16:03:40.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:40.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:40.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:40.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:40.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:40.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:40.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:40.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:40.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:40.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:40.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:40.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:40.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:40.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:40.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:40.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:40.857][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-03-02 16:03:40.858][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:40.860][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-03-02 16:03:40.862][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:40.863][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:40.864][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:40.866][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:40.867][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:40.868][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:40.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:40.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:40.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:40.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:40.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:40.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:40.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:40.885][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2024-03-02 16:03:40.888][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:40.889][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:40.891][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2024-03-02 16:03:41.262][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2024-03-02 16:03:41.633][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:41.636][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2024-03-02 16:03:41.640][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2024-03-02 16:03:41.643][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2024-03-02 16:03:41.645][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:41.647][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:41.648][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:41.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:41.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:41.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:41.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:41.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:41.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:41.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:41.676][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:41.683][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:41.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.685][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:41.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:41.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.692][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:41.693][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:41.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.695][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.697][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:41.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:41.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.711][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:41.713][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:41.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.717][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:41.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:41.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:41.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:41.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.730][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:41.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:41.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.737][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:41.738][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:41.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.740][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:41.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:41.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:41.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:41.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.750][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.752][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:41.753][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:41.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.755][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.757][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:41.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:41.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:41.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:41.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.765][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:41.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:41.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.772][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:41.773][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:41.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.775][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:41.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:41.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.782][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:41.783][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:41.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.785][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:41.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:41.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.791][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:41.793][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:41.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.795][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:41.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:41.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:41.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:41.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:41.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:41.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:41.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:41.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:41.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:41.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:41.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:41.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:41.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:41.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:41.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:41.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:41.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:41.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:41.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:41.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:41.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:41.849][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-03-02 16:03:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:41.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:41.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:41.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:41.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:41.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:41.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:41.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:41.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:41.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:41.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:41.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:41.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:41.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:41.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:41.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:41.883][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-03-02 16:03:41.884][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:41.886][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-03-02 16:03:41.888][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:41.889][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:41.890][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:41.891][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:41.893][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:41.894][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:41.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:41.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:41.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:41.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:41.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:41.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:41.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:41.910][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2024-03-02 16:03:41.913][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:41.915][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:41.916][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2024-03-02 16:03:42.285][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2024-03-02 16:03:42.654][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:42.656][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2024-03-02 16:03:42.661][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2024-03-02 16:03:42.664][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2024-03-02 16:03:42.666][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:42.667][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:42.669][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:42.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:42.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:42.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:42.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:42.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:42.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:42.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:42.685][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:42.687][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:42.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.689][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:42.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:42.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.698][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:42.704][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:42.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.706][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.708][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:42.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.722][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:42.731][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:42.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.735][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:42.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:42.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:42.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:42.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.745][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:42.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:42.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:42.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:42.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.755][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:42.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:42.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.762][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:42.763][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:42.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.765][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.767][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:42.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:42.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.770][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.772][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.777][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:42.778][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:42.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.781][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:42.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.794][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:42.796][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:42.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.798][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:42.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.805][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:42.807][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:42.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.809][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.810][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:42.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:42.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.815][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:42.817][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:42.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.819][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:42.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:42.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:42.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:42.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:42.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:42.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:42.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:42.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:42.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:42.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:42.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:42.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:42.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:42.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:42.875][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-03-02 16:03:42.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:42.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:42.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:42.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:42.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:42.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:42.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:42.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:42.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:42.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:42.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:42.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:42.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:42.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:42.904][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-03-02 16:03:42.905][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:42.907][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-03-02 16:03:42.909][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:42.910][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:42.911][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:42.913][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:42.914][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:42.915][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:42.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:42.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:42.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:42.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:42.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:42.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:42.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:42.932][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2024-03-02 16:03:42.935][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:42.937][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:42.938][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2024-03-02 16:03:43.311][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2024-03-02 16:03:43.682][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:43.685][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2024-03-02 16:03:43.689][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2024-03-02 16:03:43.700][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2024-03-02 16:03:43.702][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:43.704][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:43.705][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:43.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:43.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:43.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:43.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:43.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:43.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:43.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:43.721][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:43.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:43.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.724][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:43.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:43.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.731][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:43.732][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:43.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.734][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.736][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:43.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:43.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.741][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:43.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:43.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.745][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:43.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:43.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:43.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:43.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.754][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:43.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:43.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:43.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:43.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.764][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:43.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:43.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.771][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:43.772][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:43.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.774][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.776][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:43.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:43.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.779][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.786][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:43.787][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:43.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.789][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:43.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:43.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.796][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:43.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:43.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.799][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:43.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:43.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.806][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:43.807][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:43.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.810][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.811][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:43.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:43.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.816][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:43.818][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:43.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.820][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:43.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:43.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:43.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:43.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:43.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:43.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:43.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:43.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:43.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:43.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:43.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:43.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:43.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:43.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:43.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:43.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:43.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:43.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:43.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:43.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:43.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:43.881][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-03-02 16:03:43.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:43.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:43.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:43.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:43.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:43.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:43.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:43.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:43.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:43.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:43.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:43.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:43.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:43.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:43.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:43.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:43.910][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-03-02 16:03:43.911][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:43.913][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-03-02 16:03:43.915][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:43.916][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:43.917][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:43.919][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:43.921][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:43.922][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:43.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:43.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:43.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:43.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:43.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:43.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:43.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:43.939][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2024-03-02 16:03:43.942][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:43.944][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:43.946][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2024-03-02 16:03:44.325][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2024-03-02 16:03:44.694][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:44.697][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2024-03-02 16:03:44.701][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2024-03-02 16:03:44.705][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2024-03-02 16:03:44.730][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:44.732][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:44.733][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:44.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:44.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:44.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:44.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:44.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:44.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:44.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:44.749][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:44.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:44.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.753][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:44.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:44.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.759][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:44.760][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:44.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.763][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.764][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:44.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:44.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.769][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:44.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:44.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.773][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:44.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:44.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:44.781][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:44.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.783][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:44.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:44.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:44.800][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:44.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.802][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:44.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:44.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.809][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:44.810][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:44.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.812][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.814][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:44.815][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:44.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.818][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.819][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:44.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:44.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:44.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:44.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.828][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:44.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:44.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.834][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:44.835][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:44.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.838][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:44.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:44.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.844][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:44.846][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:44.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.848][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.849][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:44.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:44.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.854][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:44.856][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:44.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.858][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:44.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:44.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:44.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:44.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:44.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:44.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:44.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:44.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:44.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:44.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:44.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:44.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:44.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:44.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:44.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:44.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:44.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:44.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:44.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:44.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:44.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:44.914][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-03-02 16:03:44.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:44.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:44.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:44.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:44.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:44.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:44.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:44.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:44.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:44.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:44.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:44.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:44.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:44.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:44.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:44.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:44.943][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-03-02 16:03:44.944][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:44.946][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-03-02 16:03:44.948][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:44.954][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:44.955][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:44.957][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:44.958][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:44.959][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:44.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:44.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:44.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:44.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:44.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:44.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:44.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:44.975][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2024-03-02 16:03:44.979][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:44.980][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:44.982][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2024-03-02 16:03:45.356][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2024-03-02 16:03:45.733][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:45.735][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2024-03-02 16:03:45.763][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2024-03-02 16:03:45.767][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2024-03-02 16:03:45.769][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:45.771][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:45.772][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:45.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:45.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:45.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:45.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:45.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:45.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:45.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:45.789][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:45.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:45.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.792][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:45.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:45.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.799][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:45.800][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:45.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.802][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:45.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:45.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.809][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:45.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:45.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.813][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:45.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:45.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.819][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:45.820][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:45.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.823][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:45.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:45.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:45.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:45.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.833][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:45.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.840][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:45.841][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:45.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.843][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.845][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:45.846][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:45.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.848][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.855][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:45.856][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:45.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.858][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:45.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:45.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.865][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:45.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:45.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.868][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:45.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:45.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.875][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:45.877][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:45.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.879][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.880][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:45.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:45.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.893][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:45.895][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:45.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.897][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:45.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:45.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:45.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:45.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:45.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:45.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:45.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:45.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:45.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:45.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:45.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:45.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:45.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:45.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:45.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:45.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:45.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:45.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:45.951][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-03-02 16:03:45.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:45.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:45.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:45.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:45.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:45.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:45.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:45.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:45.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:45.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:45.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:45.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:45.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:45.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:45.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:45.979][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-03-02 16:03:45.981][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:45.983][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-03-02 16:03:45.984][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:45.985][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:45.987][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:45.988][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:45.989][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:45.990][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:45.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:45.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:45.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:46.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:46.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:46.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:46.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:46.006][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2024-03-02 16:03:46.009][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:46.011][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:46.012][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2024-03-02 16:03:46.382][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2024-03-02 16:03:46.752][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:46.755][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2024-03-02 16:03:46.759][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2024-03-02 16:03:46.787][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2024-03-02 16:03:46.789][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:46.790][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:46.792][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:46.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:46.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:46.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:46.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:46.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:46.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:46.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:46.818][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:46.819][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:46.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.822][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:46.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:46.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.828][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:46.829][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:46.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.832][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.833][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:46.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:46.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.838][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:46.839][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:46.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.842][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:46.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:46.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.848][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:46.849][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:46.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.852][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.853][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:46.855][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:46.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.857][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:46.860][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:46.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.862][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.863][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:46.865][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:46.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.867][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.868][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:46.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.873][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:46.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:46.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.877][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:46.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:46.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.883][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:46.885][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:46.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.887][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:46.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:46.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.893][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:46.895][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:46.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.897][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.898][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:46.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:46.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.903][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:46.904][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:46.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.907][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:46.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:46.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:46.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:46.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:46.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:46.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:46.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:46.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:46.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:46.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:46.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:46.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:46.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:46.956][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-03-02 16:03:46.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:46.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:46.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:46.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:46.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:46.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:46.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:46.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:46.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:46.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:46.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:46.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:46.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:46.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:46.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:46.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:46.989][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-03-02 16:03:46.990][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:46.992][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-03-02 16:03:46.993][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:46.994][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:46.996][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:46.997][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:46.998][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:46.999][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:47.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:47.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:47.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:47.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:47.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:47.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:47.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:47.015][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2024-03-02 16:03:47.019][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:47.020][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:47.022][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2024-03-02 16:03:47.393][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2024-03-02 16:03:47.762][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:47.765][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2024-03-02 16:03:47.769][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2024-03-02 16:03:47.772][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2024-03-02 16:03:47.774][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:47.775][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:47.777][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:47.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:47.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:47.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:47.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:47.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:47.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:47.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:47.793][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:47.794][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:47.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.796][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:47.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:47.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.802][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:47.804][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:47.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.806][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:47.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:47.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.812][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:47.813][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:47.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.816][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:47.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:47.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:47.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:47.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.826][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.827][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:47.828][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:47.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.831][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.832][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:47.833][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:47.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.836][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.837][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:47.838][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:47.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.841][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.842][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:47.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:47.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.847][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:47.848][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:47.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.851][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:47.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:47.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.857][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:47.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:47.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.861][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:47.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:47.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.876][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:47.877][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:47.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.879][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.881][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:47.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:47.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.886][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:47.887][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:47.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.889][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:47.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:47.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:47.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:47.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:47.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:47.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:47.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:47.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:47.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:47.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:47.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:47.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:47.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:47.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:47.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:47.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:47.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:47.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:47.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:47.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:47.940][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-03-02 16:03:47.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:47.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:47.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:47.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:47.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:47.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:47.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:47.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:47.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:47.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:47.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:47.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:47.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:47.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:47.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:47.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:47.968][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-03-02 16:03:47.970][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:47.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-03-02 16:03:47.973][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:47.974][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:47.976][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:47.977][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:47.978][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:47.979][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:47.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:47.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:47.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:47.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:47.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:47.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:47.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:47.996][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2024-03-02 16:03:47.999][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:48.000][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:48.002][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2024-03-02 16:03:48.379][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2024-03-02 16:03:48.751][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:48.753][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2024-03-02 16:03:48.759][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2024-03-02 16:03:48.762][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2024-03-02 16:03:48.764][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:48.766][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:48.767][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:48.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:48.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:48.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:48.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:48.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:48.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:48.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:48.792][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:48.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:48.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.796][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:48.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.802][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:48.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:48.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.806][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:48.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:48.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.812][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:48.814][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:48.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.816][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:48.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:48.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:48.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:48.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.826][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:48.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:48.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:48.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:48.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.836][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:48.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:48.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.843][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:48.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:48.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.846][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.848][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:48.849][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:48.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.852][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.853][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:48.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:48.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.858][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:48.860][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:48.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.862][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:48.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:48.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.868][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:48.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:48.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.872][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:48.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:48.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.879][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:48.880][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:48.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.882][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.884][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:48.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:48.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:48.890][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:48.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.893][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:48.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:48.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:48.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:48.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:48.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:48.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:48.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:48.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:48.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:48.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:48.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:48.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:48.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:48.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:48.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:48.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:48.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:48.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:48.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:48.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:48.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:48.956][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-03-02 16:03:48.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:48.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:48.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:48.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:48.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:48.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:48.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:48.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:48.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:48.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:48.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:48.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:48.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:48.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:48.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:48.984][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-03-02 16:03:48.985][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:48.987][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-03-02 16:03:48.989][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:48.990][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:48.991][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:48.993][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:48.994][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:48.995][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:48.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:48.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:49.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:49.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:49.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:49.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:49.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:49.011][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2024-03-02 16:03:49.014][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:49.016][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:49.018][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2024-03-02 16:03:49.387][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2024-03-02 16:03:49.757][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:49.760][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2024-03-02 16:03:49.764][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2024-03-02 16:03:49.768][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2024-03-02 16:03:49.770][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:49.771][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:49.772][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:49.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:49.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:49.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:49.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:49.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:49.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:49.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:49.789][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:49.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:49.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.792][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:49.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:49.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.798][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:49.800][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:49.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.802][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.803][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:49.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:49.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.808][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:49.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:49.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.812][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:49.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:49.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:49.820][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:49.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.822][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:49.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:49.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.828][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:49.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:49.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.832][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:49.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:49.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.838][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:49.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:49.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.850][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.852][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:49.853][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:49.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.856][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:49.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:49.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:49.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:49.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.867][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:49.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:49.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.873][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:49.874][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:49.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.876][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:49.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.883][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:49.884][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:49.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.887][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:49.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:49.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.893][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:49.894][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:49.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.896][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:49.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:49.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:49.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:49.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:49.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:49.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:49.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:49.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:49.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:49.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:49.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:49.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:49.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:49.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:49.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:49.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:49.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:49.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:49.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:49.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:49.951][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-03-02 16:03:49.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:49.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:49.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:49.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:49.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:49.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:49.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:49.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:49.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:49.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:49.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:49.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:49.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:49.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:49.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:49.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:49.979][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-03-02 16:03:49.980][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:49.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-03-02 16:03:49.984][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:49.985][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:49.986][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:49.987][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:49.989][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:49.990][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:49.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:49.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:49.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:50.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:50.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:50.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:50.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:50.011][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2024-03-02 16:03:50.014][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:50.015][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:50.017][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2024-03-02 16:03:50.391][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2024-03-02 16:03:50.761][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:50.763][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2024-03-02 16:03:50.768][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2024-03-02 16:03:50.771][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2024-03-02 16:03:50.773][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:50.774][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:50.776][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:50.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:50.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:50.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:50.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:50.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:50.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:50.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:50.792][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:50.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:50.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.796][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:50.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:50.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.802][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:50.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:50.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.806][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:50.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:50.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.812][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:50.813][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:50.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.816][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:50.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:50.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:50.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:50.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.826][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:50.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:50.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:50.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:50.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.837][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:50.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.843][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:50.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:50.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.847][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.848][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:50.850][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:50.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.852][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.853][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:50.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:50.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.858][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:50.860][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:50.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.862][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:50.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:50.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.869][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:50.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:50.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.872][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:50.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:50.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.879][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:50.880][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:50.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.882][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.884][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:50.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:50.890][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:50.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.893][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:50.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:50.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:50.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:50.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:50.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:50.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:50.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:50.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:50.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:50.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:50.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:50.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:50.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:50.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:50.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:50.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:50.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:50.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:50.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:50.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:50.956][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-03-02 16:03:50.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:50.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:50.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:50.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:50.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:50.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:50.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:50.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:50.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:50.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:50.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:50.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:50.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:50.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:50.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:50.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:50.985][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-03-02 16:03:50.987][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:50.989][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-03-02 16:03:50.990][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:50.991][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:50.993][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:50.994][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:50.995][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:50.996][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:50.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:51.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:51.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:51.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:51.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:51.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:51.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:51.012][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2024-03-02 16:03:51.016][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:51.017][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:51.019][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2024-03-02 16:03:51.390][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2024-03-02 16:03:51.759][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:51.762][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2024-03-02 16:03:51.767][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2024-03-02 16:03:51.770][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2024-03-02 16:03:51.772][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:51.774][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:51.775][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:51.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:51.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:51.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:51.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:51.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:51.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:51.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:51.791][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:51.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:51.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.795][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:51.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:51.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.801][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:51.802][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:51.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.805][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.813][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:51.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:51.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.819][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:51.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:51.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.823][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:51.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:51.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.829][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:51.830][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:51.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.833][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:51.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:51.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.839][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:51.841][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:51.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.843][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:51.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.849][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:51.851][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:51.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.853][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.855][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:51.856][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:51.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.858][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.860][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:51.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.865][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:51.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:51.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.868][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:51.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:51.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.875][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:51.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:51.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.878][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:51.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.885][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:51.886][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:51.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.889][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.890][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:51.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:51.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.895][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:51.896][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:51.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.899][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:51.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:51.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:51.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:51.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:51.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:51.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:51.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:51.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:51.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:51.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:51.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:51.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:51.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:51.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:51.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:51.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:51.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:51.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:51.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:51.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:51.955][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-03-02 16:03:51.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:51.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:51.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:51.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:51.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:51.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:51.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:51.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:51.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:51.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:51.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:51.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:51.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:51.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:51.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:51.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:51.989][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-03-02 16:03:51.990][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:51.992][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-03-02 16:03:51.994][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:51.995][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:51.996][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:51.998][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:51.999][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:52.000][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:52.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:52.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:52.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:52.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:52.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:52.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:52.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:52.016][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2024-03-02 16:03:52.020][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:52.021][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:52.023][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2024-03-02 16:03:52.400][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2024-03-02 16:03:52.774][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:52.777][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2024-03-02 16:03:52.781][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2024-03-02 16:03:52.784][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2024-03-02 16:03:52.786][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:52.787][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:52.789][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:52.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:52.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:52.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:52.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:52.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:52.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:52.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:52.805][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:52.807][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:52.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.809][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:52.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:52.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.815][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:52.817][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:52.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.819][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:52.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:52.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.825][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:52.827][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:52.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.829][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:52.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:52.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.835][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:52.837][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:52.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.839][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:52.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:52.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:52.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:52.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.849][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:52.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:52.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.855][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:52.857][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:52.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.859][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.860][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:52.862][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:52.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.864][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.865][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:52.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:52.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:52.872][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:52.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.874][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:52.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.889][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:52.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:52.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.892][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.899][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:52.900][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:52.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.902][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:52.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:52.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:52.910][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:52.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.912][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:52.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:52.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:52.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:52.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:52.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:52.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:52.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:52.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:52.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:52.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:52.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:52.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:52.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:52.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:52.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:52.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:52.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:52.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:52.967][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-03-02 16:03:52.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:52.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:52.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:52.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:52.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:52.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:52.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:52.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:52.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:52.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:52.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:52.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:52.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:52.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:52.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:52.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:52.995][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-03-02 16:03:52.996][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:52.998][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-03-02 16:03:53.000][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:53.001][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:53.002][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:53.004][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:53.005][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:53.006][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:53.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:53.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:53.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:53.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:53.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:53.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:53.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:53.023][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.DEBUG[2024-03-02 16:03:53.026][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:53.027][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:53.029][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.TRACE[2024-03-02 16:03:53.403][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655).
biodb.DEBUG[2024-03-02 16:03:53.789][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:53.791][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.content"
biodb.TRACE[2024-03-02 16:03:53.803][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.request"
biodb.TRACE[2024-03-02 16:03:53.848][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml"
biodb.DEBUG[2024-03-02 16:03:53.850][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:53.852][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:53.853][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:53.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:53.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:53.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:53.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:53.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:53.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:53.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:53.869][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:53.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:53.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.872][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:53.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:53.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.879][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:53.880][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:53.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.883][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.884][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:53.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:53.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.889][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:53.891][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:53.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.893][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:53.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:53.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.900][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:53.901][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:53.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.903][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:53.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:53.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.910][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:53.911][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:53.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.913][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:53.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.920][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:53.921][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:53.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.923][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.925][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:53.926][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:53.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.929][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.930][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:53.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:53.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:53.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:53.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.939][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:53.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:53.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.945][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:53.947][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:53.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.949][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:53.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:53.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.956][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:53.957][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:53.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.959][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.961][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:53.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:53.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.966][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:53.967][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:53.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.969][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:53.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:53.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:53.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:53.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:53.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:53.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:53.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:53.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:53.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:53.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:53.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:53.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:53.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:54.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:54.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:54.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:54.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:54.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:54.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:54.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:54.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:54.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:54.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:54.031][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-03-02 16:03:54.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:54.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:54.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:54.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:54.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:54.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:54.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:54.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:54.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:54.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:54.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:54.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:54.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:54.060][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-03-02 16:03:54.061][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:54.063][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-03-02 16:03:54.065][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:54.066][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:54.067][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:54.069][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:54.070][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:54.071][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:54.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:54.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:54.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:54.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:54.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:54.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:54.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:54.088][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.DEBUG[2024-03-02 16:03:54.091][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:54.092][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:54.094][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.TRACE[2024-03-02 16:03:54.464][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045).
biodb.DEBUG[2024-03-02 16:03:54.833][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:54.836][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.content"
biodb.TRACE[2024-03-02 16:03:54.882][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.request"
biodb.TRACE[2024-03-02 16:03:54.885][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml"
biodb.DEBUG[2024-03-02 16:03:54.923][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:54.925][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:54.926][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:54.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:54.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:54.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:54.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:54.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:54.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:54.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:54.943][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:54.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:54.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:54.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:54.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.953][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:54.954][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:54.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.957][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.958][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:54.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:54.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.963][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:54.964][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:54.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.967][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:54.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:54.983][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:54.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.985][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:54.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:54.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:54.993][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:54.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:54.996][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:54.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:55.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.002][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:55.003][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:55.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.006][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.007][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:55.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.011][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.012][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:55.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.017][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.019][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.021][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.028][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:55.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:55.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:55.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:55.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.038][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:55.039][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:55.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.042][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.043][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:55.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:55.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.048][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:55.049][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:55.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:55.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:55.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:55.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:55.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:55.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:55.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:55.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:55.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:55.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:55.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:55.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:55.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:55.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:55.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.108][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-03-02 16:03:55.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.152][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:03:55.156][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:03:55.158][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-02 16:03:55.159][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:03:55.161][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-03-02 16:03:55.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:55.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:55.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:55.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:55.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:55.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:55.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:55.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:55.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:55.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:55.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:55.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:55.847][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:03:55.852][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:55.853][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:55.855][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:03:56.228][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:03:56.601][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:56.603][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content"
biodb.TRACE[2024-03-02 16:03:56.631][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.request"
biodb.DEBUG[2024-03-02 16:03:56.635][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:03:56.640][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:56.641][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:56.643][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:03:57.014][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:03:57.392][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:57.395][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content"
biodb.TRACE[2024-03-02 16:03:57.435][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.request"
biodb.DEBUG[2024-03-02 16:03:57.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:57.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:57.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:57.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:57.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:57.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:57.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:57.452][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-03-02 16:03:57.454][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:57.455][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-03-02 16:03:57.457][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:57.458][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:57.460][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:57.461][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:57.462][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:57.463][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:57.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:57.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:57.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:57.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:57.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:57.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:57.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:57.480][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2024-03-02 16:03:57.483][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:57.484][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:57.496][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2024-03-02 16:03:57.880][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2024-03-02 16:03:58.256][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:58.259][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2024-03-02 16:03:58.263][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2024-03-02 16:03:58.266][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2024-03-02 16:03:58.268][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:58.269][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:58.271][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:58.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:58.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:58.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:58.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:58.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:58.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:58.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:58.286][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:58.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:58.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.290][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:58.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.296][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:58.298][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:58.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.300][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.301][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:58.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:58.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.306][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:58.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:58.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.310][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:58.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:58.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:58.318][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:58.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.320][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:58.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:58.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:58.328][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:58.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.330][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:58.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:58.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.336][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:58.338][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:58.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.340][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.341][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:58.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:58.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.346][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:58.348][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:58.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.350][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.351][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:58.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:58.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.356][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.358][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.360][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.366][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:58.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:58.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.370][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:58.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:58.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.376][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:58.378][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:58.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.380][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:58.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.386][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:58.388][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:58.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.390][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:58.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:58.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:58.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:58.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:58.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:58.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:58.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:58.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:58.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:58.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:58.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:58.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:58.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:58.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:58.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:58.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:58.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:58.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:58.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:58.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:58.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:58.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:58.453][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-03-02 16:03:58.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:58.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:58.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:58.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:58.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:58.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:58.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:58.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:58.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:58.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:58.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:58.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:58.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:58.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:58.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:58.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:58.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:58.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:58.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:58.510][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-03-02 16:03:58.511][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:03:58.513][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-03-02 16:03:58.515][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:03:58.516][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:03:58.517][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:03:58.518][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:03:58.520][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:03:58.521][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:03:58.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:58.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:58.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:58.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:58.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:58.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:58.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:03:58.538][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2024-03-02 16:03:58.541][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:03:58.542][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:03:58.544][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2024-03-02 16:03:58.927][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2024-03-02 16:03:59.295][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:03:59.298][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2024-03-02 16:03:59.322][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2024-03-02 16:03:59.325][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2024-03-02 16:03:59.327][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:03:59.329][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:03:59.330][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:03:59.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:59.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:59.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:59.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:59.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:59.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:59.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:59.483][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:59.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:59.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.487][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:59.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:59.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.493][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:59.494][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:59.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.496][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.498][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:03:59.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:03:59.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.502][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:59.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:59.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.506][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.507][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:03:59.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:03:59.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.512][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:59.513][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:59.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.515][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:03:59.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:03:59.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.522][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:59.523][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:59.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.525][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:03:59.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:03:59.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.531][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:59.533][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:03:59.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.535][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.536][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:59.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:59.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.540][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.541][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:03:59.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:03:59.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.547][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.549][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.555][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:59.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:59.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.559][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:03:59.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:03:59.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.565][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:59.566][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:59.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.568][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:03:59.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:03:59.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.575][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:59.576][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:59.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.578][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:03:59.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:03:59.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:59.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:59.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:59.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:59.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:59.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:59.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:03:59.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:03:59.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:59.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:59.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:59.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:59.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:59.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:59.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:59.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:59.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:59.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:59.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:03:59.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:03:59.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:59.632][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-03-02 16:03:59.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:59.677][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:03:59.682][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:03:59.684][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-02 16:03:59.686][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:03:59.688][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-03-02 16:03:59.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:59.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:59.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:59.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:59.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:59.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:59.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:59.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:59.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:59.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:59.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:59.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:59.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:59.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:59.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:59.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:59.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:59.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:59.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:59.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:59.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:59.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:59.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:59.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:59.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:59.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:59.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:59.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:59.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:59.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:59.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:59.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:59.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:59.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:59.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:59.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:59.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:59.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:59.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:59.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:59.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:59.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:59.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:59.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:59.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:59.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:59.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:59.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:59.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:59.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:59.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:59.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:59.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:59.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:59.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:59.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:59.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:59.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:59.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:59.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:59.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:59.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:59.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:59.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:03:59.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:03:59.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:03:59.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:03:59.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:03:59.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:03:59.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:03:59.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:03:59.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:03:59.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:03:59.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:03:59.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.340][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:00.344][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:00.346][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-02 16:04:00.347][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:00.353][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-03-02 16:04:00.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:00.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:00.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:00.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:00.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:00.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:00.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:00.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:00.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:00.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.954][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:00.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:00.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 16:04:00.968][biodb::testThat]
biodb.INFO [2024-03-02 16:04:00.970][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-03-02 16:04:00.971][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:04:00.972][biodb::testThat]
biodb.TRACE[2024-03-02 16:04:00.976][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:04:00.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:04:00.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.981][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:04:00.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:04:00.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.986][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:04:00.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:04:00.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:00.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:00.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:00.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:00.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:00.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:00.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:01.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:01.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:01.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:01.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:01.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:01.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:01.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:01.067][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:01.071][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:01.073][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-03-02 16:04:01.074][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:01.076][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-03-02 16:04:01.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:01.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:01.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:01.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:01.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:01.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:01.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:01.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:01.108][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:01.112][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:01.113][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-03-02 16:04:01.115][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:01.116][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-03-02 16:04:01.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:01.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:01.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:01.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:01.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:01.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:01.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:01.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:01.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:01.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:01.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:01.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:01.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:01.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:01.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:01.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:01.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:01.176][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:01.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:01.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:01.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:01.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:01.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:01.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:01.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:01.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.204][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:01.205][private$selectFields]
biodb.TRACE[2024-03-02 16:04:01.206][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:01.207][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:01.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:01.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.210][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.213][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.217][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.218][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:01.220][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:01.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.224][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.225][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:01.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.251][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-03-02 16:04:01.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:01.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:01.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:01.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:01.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:01.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:01.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.274][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:01.275][private$selectFields]
biodb.TRACE[2024-03-02 16:04:01.276][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:01.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:01.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:01.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.283][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.288][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:01.290][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:01.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.295][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.296][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:01.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:04:01.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:01.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:01.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:01.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:01.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:01.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:01.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:01.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:01.335][private$selectFields]
biodb.TRACE[2024-03-02 16:04:01.336][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:01.337][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:01.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:01.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.343][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.348][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:01.350][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:01.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.355][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.356][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:01.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:01.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:01.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:01.372][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-03-02 16:04:01.373][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:01.374][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:04:01.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:01.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:01.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:01.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:01.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:01.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:01.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:01.392][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:01.396][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:01.397][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:01.400][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:04:01.769][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:04:02.138][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:02.140][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2024-03-02 16:04:02.218][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2024-03-02 16:04:02.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:02.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:02.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:02.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:02.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:02.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:02.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:02.234][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2024-03-02 16:04:02.235][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:02.237][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2024-03-02 16:04:02.239][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:02.240][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:02.242][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:02.243][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:02.244][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:02.245][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:02.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:02.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:02.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:02.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:02.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:02.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:02.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:02.261][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2024-03-02 16:04:02.264][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:02.266][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:02.267][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2024-03-02 16:04:02.642][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2024-03-02 16:04:03.014][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:03.017][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2024-03-02 16:04:03.021][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2024-03-02 16:04:03.025][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2024-03-02 16:04:03.027][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:03.029][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:03.031][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:03.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:03.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:03.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:03.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:03.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:03.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:03.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:03.048][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:03.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:03.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:03.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:03.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.059][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:03.060][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:03.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.062][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.064][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:03.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:03.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.069][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:03.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:03.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.072][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.074][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:03.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:03.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.079][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:03.080][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:03.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.083][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:03.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:03.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.089][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:03.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:03.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:03.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:03.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.099][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:03.101][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:03.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.103][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.104][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:03.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:03.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.108][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:03.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:03.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.115][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:03.116][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:03.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.118][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:03.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:03.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.125][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:03.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:03.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.129][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:03.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:03.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.136][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:03.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:03.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.139][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:03.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:03.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.156][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:03.157][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:03.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.159][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:03.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:03.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:03.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:03.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:03.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:03.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:03.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:03.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:03.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:03.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:03.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:03.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:03.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:03.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:03.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:03.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:03.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:03.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:03.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:03.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:03.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:03.212][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2024-03-02 16:04:03.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:03.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:03.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:03.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:03.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:03.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:03.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:03.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:03.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:03.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:03.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:03.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:03.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:03.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:03.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:03.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:03.240][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2024-03-02 16:04:03.241][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:03.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2024-03-02 16:04:03.245][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:03.246][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:03.247][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:03.248][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:03.250][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:03.251][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:03.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:03.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:03.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:03.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:03.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:03.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:03.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:03.266][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2024-03-02 16:04:03.270][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:03.271][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:03.272][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2024-03-02 16:04:03.641][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2024-03-02 16:04:04.015][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:04.018][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2024-03-02 16:04:04.022][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2024-03-02 16:04:04.025][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2024-03-02 16:04:04.027][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:04.028][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:04.029][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:04.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:04.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:04.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:04.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:04.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:04.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:04.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:04.045][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:04.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:04.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:04.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:04.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.055][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:04.056][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:04.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.060][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:04.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:04.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.065][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:04.066][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:04.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:04.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:04.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.075][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:04.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:04.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.078][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:04.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:04.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:04.086][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:04.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.088][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:04.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:04.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:04.096][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:04.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.098][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.099][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:04.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:04.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.103][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.104][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:04.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.109][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:04.110][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:04.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.113][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:04.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:04.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.119][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:04.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:04.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.122][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:04.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:04.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.129][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:04.130][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:04.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.132][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.134][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:04.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:04.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.138][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:04.140][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:04.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.142][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:04.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:04.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:04.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:04.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:04.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:04.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:04.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:04.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:04.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:04.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:04.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:04.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:04.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:04.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:04.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:04.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:04.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:04.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:04.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:04.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:04.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:04.196][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2024-03-02 16:04:04.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:04.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:04.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:04.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:04.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:04.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:04.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:04.213][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:04.217][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:04.218][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:04.220][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:04:04.592][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:04:04.961][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:04.963][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2024-03-02 16:04:04.968][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2024-03-02 16:04:04.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:04.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:04.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:04.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:04.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:04.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:04.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:04.985][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2024-03-02 16:04:04.986][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:04.988][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2024-03-02 16:04:04.990][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:04.991][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:04.992][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:04.994][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:04.995][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:04.996][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:04.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:05.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:05.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:05.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:05.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:05.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:05.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:05.012][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2024-03-02 16:04:05.016][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:05.017][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:05.019][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2024-03-02 16:04:05.388][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2024-03-02 16:04:05.851][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:05.854][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2024-03-02 16:04:05.871][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2024-03-02 16:04:05.874][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2024-03-02 16:04:05.876][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:05.878][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:05.879][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:05.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:05.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:05.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:05.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:05.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:05.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:05.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:05.895][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:05.896][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:05.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.898][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:05.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:05.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.905][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:05.906][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:05.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.908][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:05.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.914][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:05.915][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:05.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.918][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:05.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:05.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.924][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:05.926][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:05.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.928][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:05.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:05.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.934][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:05.936][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:05.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.938][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:05.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:05.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.944][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:05.945][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:05.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.948][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.949][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:05.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:05.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.954][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:05.955][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:05.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.957][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.959][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:05.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:05.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.964][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:05.965][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:05.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.967][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:05.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:05.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.973][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:05.975][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:05.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.977][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:05.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:05.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.983][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:05.984][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:05.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.987][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.988][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:05.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:05.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.993][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:05.994][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:05.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:05.996][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:05.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:05.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:06.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:06.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:06.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:06.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:06.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:06.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:06.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:06.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:06.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:06.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:06.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:06.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:06.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:06.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:06.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:06.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:06.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:06.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:06.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:06.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:06.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:06.050][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2024-03-02 16:04:06.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:06.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:06.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:06.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:06.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:06.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:06.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:06.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:06.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:06.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:06.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:06.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:06.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:06.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:06.079][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2024-03-02 16:04:06.080][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:06.082][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2024-03-02 16:04:06.083][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:06.085][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:06.086][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:06.087][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:06.088][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:06.089][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:06.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:06.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:06.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:06.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:06.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:06.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:06.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:06.106][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2024-03-02 16:04:06.109][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:06.110][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:06.112][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2024-03-02 16:04:06.482][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2024-03-02 16:04:06.858][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:06.860][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2024-03-02 16:04:06.865][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2024-03-02 16:04:06.868][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2024-03-02 16:04:06.870][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:06.871][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:06.873][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:06.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:06.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:06.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:06.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:06.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:06.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:06.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:06.889][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:06.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:06.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.893][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:06.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:06.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.899][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:06.900][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:06.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.903][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:06.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:06.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.909][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:06.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:06.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.913][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:06.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:06.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.920][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:06.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:06.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.924][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:06.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:06.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:06.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:06.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.934][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:06.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:06.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.941][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:06.942][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:06.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.945][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.946][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:06.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:06.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.951][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:06.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:06.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.955][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.956][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:06.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:06.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.961][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:06.962][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:06.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.965][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:06.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:06.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.971][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:06.972][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:06.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.975][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:06.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:06.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.982][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:06.983][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:06.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.985][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.987][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:06.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:06.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.992][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:06.993][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:06.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:06.995][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:06.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:06.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:06.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:07.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:07.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:07.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:07.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:07.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:07.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:07.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:07.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:07.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:07.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:07.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:07.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:07.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:07.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:07.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:07.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:07.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:07.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:07.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:07.084][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2024-03-02 16:04:07.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:07.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:07.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:07.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:07.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:07.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:07.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:07.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:07.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:07.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:07.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:07.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:07.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:07.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:07.112][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2024-03-02 16:04:07.114][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:07.116][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2024-03-02 16:04:07.117][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:07.119][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:07.120][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:07.121][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:07.122][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:07.123][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:07.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:07.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:07.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:07.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:07.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:07.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:07.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:07.140][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2024-03-02 16:04:07.143][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:07.144][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:07.146][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2024-03-02 16:04:07.519][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2024-03-02 16:04:07.894][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:07.897][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2024-03-02 16:04:07.934][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2024-03-02 16:04:07.938][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2024-03-02 16:04:07.940][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:07.941][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:07.942][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:07.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:07.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:07.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:07.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:07.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:07.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:07.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:07.959][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:07.960][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:07.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.962][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:07.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:07.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.969][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:07.970][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:07.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.972][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.974][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:07.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:07.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.979][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:07.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:07.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.982][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:07.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:07.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:07.990][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:07.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.992][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:07.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:07.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:07.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:07.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:08.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:08.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.003][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:08.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:08.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.009][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:08.010][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:08.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.013][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.014][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:08.015][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:08.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.018][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.019][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:08.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:08.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.024][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:08.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:08.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:08.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:08.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.034][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:08.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:08.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.038][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:08.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.045][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:08.046][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:08.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.048][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:08.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:08.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.055][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:08.056][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:08.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:08.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:08.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:08.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:08.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:08.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:08.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:08.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:08.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:08.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:08.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:08.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:08.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:08.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:08.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:08.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:08.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:08.114][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2024-03-02 16:04:08.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:08.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:08.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:08.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:08.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:08.161][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:08.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:08.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:08.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:08.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:08.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:08.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:08.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:08.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:08.217][private$selectFields]
biodb.TRACE[2024-03-02 16:04:08.218][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:08.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:08.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:08.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.232][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.237][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:08.240][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:08.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.244][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.246][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:08.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:04:08.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:08.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:08.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:08.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:08.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:08.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:08.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:08.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:08.287][private$selectFields]
biodb.TRACE[2024-03-02 16:04:08.288][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:08.289][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:08.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:08.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.295][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.300][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:08.302][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:08.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.307][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.308][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:08.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.323][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-03-02 16:04:08.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:08.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:08.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:08.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:08.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:08.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:08.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:08.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.347][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:08.348][private$selectFields]
biodb.TRACE[2024-03-02 16:04:08.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:08.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:08.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:08.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.356][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.361][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:08.363][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:08.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.368][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.369][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:08.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:08.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:08.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:08.385][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-03-02 16:04:08.386][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:08.387][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:04:08.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:08.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:08.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:08.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:08.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:08.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:08.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:08.404][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:08.408][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:08.410][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:08.412][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:04:08.788][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:04:09.160][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:09.162][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2024-03-02 16:04:09.167][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2024-03-02 16:04:09.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:09.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:09.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:09.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:09.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:09.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:09.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:09.184][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2024-03-02 16:04:09.185][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:09.187][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2024-03-02 16:04:09.188][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:09.190][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:09.191][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:09.192][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:09.193][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:09.195][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:09.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:09.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:09.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:09.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:09.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:09.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:09.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:09.211][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2024-03-02 16:04:09.214][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:09.216][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:09.217][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2024-03-02 16:04:09.596][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2024-03-02 16:04:09.972][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:09.974][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2024-03-02 16:04:09.978][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2024-03-02 16:04:09.982][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2024-03-02 16:04:09.983][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:09.985][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:09.986][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:09.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:09.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:09.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:09.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:09.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:09.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:10.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:10.002][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:10.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:10.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.006][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:10.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:10.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.012][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:10.013][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:10.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.016][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.017][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:10.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.022][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:10.023][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:10.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.026][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:10.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:10.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:10.034][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:10.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.036][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:10.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:10.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:10.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.046][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:10.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:10.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.052][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:10.053][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:10.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.055][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.057][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:10.058][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:10.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.060][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.062][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:10.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:10.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:10.068][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:10.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.070][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:10.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:10.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.077][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:10.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:10.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.080][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:10.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:10.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.087][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:10.089][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:10.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.093][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:10.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:10.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.098][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:10.100][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:10.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.102][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:10.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:10.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:10.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:10.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:10.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:10.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:10.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:10.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:10.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:10.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:10.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:10.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:10.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:10.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:10.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:10.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:10.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:10.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:10.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:10.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:10.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:10.167][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2024-03-02 16:04:10.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:10.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:10.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:10.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:10.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:10.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:10.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:10.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:10.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:10.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:10.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:10.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:10.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:10.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:10.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:10.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:10.195][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2024-03-02 16:04:10.196][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:10.198][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2024-03-02 16:04:10.199][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:10.200][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:10.202][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:10.203][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:10.204][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:10.205][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:10.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:10.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:10.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:10.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:10.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:10.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:10.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:10.221][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2024-03-02 16:04:10.224][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:10.226][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:10.227][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2024-03-02 16:04:10.601][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2024-03-02 16:04:10.980][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:10.982][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2024-03-02 16:04:10.986][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2024-03-02 16:04:10.989][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2024-03-02 16:04:10.991][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:10.993][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:10.994][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:10.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:10.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:10.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:11.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:11.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:11.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:11.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:11.010][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:11.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:11.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.014][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:11.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:11.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.020][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:11.021][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:11.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.023][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.025][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:11.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:11.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.030][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:11.031][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:11.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.033][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:11.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:11.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:11.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:11.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.044][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:11.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:11.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.050][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:11.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:11.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.054][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:11.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:11.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.060][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:11.061][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:11.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.064][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.065][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:11.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:11.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.069][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.070][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:11.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:11.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.075][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:11.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:11.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.079][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:11.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:11.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.085][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:11.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:11.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.089][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:11.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.095][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:11.097][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:11.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.099][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.101][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:11.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:11.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:11.107][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:11.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.109][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:11.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:11.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:11.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:11.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:11.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:11.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:11.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:11.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:11.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:11.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:11.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:11.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:11.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:11.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:11.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:11.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:11.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:11.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:11.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:11.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:11.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:11.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:11.165][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2024-03-02 16:04:11.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:11.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:11.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:11.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:11.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:11.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:11.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:11.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:11.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:11.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:11.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:11.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:11.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:11.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:11.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:11.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:11.193][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2024-03-02 16:04:11.194][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:11.196][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2024-03-02 16:04:11.198][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:11.199][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:11.200][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:11.202][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:11.203][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:11.204][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:11.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:11.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:11.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:11.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:11.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:11.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:11.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:11.220][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2024-03-02 16:04:11.223][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:11.225][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:11.226][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2024-03-02 16:04:11.604][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2024-03-02 16:04:11.979][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:11.981][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2024-03-02 16:04:11.985][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2024-03-02 16:04:11.988][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2024-03-02 16:04:11.990][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:11.991][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:11.993][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:11.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:11.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:11.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:12.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:12.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:12.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:12.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:12.009][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:12.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:12.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.012][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:12.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:12.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.018][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:12.020][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:12.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.022][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:12.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:12.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.029][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:12.030][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:12.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.032][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.034][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:12.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:12.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:12.050][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:12.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.053][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:12.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:12.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:12.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:12.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.062][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:12.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:12.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.069][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:12.070][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:12.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.072][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.074][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:12.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:12.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.077][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.079][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:12.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:12.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:12.085][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:12.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.087][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:12.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:12.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.093][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:12.094][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:12.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.097][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:12.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.103][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:12.104][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:12.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.107][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:12.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:12.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.113][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:12.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:12.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.116][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:12.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:12.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:12.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:12.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:12.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:12.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:12.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:12.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:12.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:12.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:12.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:12.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:12.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:12.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:12.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:12.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:12.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:12.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:12.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:12.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:12.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:12.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:12.170][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2024-03-02 16:04:12.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:12.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:12.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:12.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:12.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:12.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:12.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:12.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:12.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:12.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:12.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:12.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:12.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:12.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:12.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:12.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:12.198][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2024-03-02 16:04:12.199][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:12.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2024-03-02 16:04:12.203][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:12.204][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:12.205][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:12.207][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:12.208][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:12.209][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:12.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:12.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:12.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:12.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:12.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:12.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:12.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:12.225][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2024-03-02 16:04:12.228][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:12.229][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:12.231][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2024-03-02 16:04:12.607][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2024-03-02 16:04:12.981][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:12.984][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2024-03-02 16:04:12.989][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2024-03-02 16:04:12.993][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2024-03-02 16:04:12.996][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:12.998][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:13.000][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:13.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:13.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:13.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:13.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:13.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:13.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:13.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:13.018][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:13.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:13.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.021][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:13.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:13.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.028][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:13.029][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:13.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.033][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:13.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:13.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.038][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:13.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:13.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.042][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:13.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:13.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.048][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:13.050][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:13.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:13.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:13.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:13.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:13.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.062][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:13.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:13.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.069][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:13.070][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:13.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.072][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.074][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:13.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:13.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.078][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.079][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:13.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:13.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.084][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:13.085][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:13.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.088][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:13.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:13.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.094][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:13.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:13.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.098][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:13.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:13.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.105][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:13.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:13.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.108][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:13.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:13.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.115][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:13.116][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:13.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.119][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:13.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:13.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:13.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:13.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:13.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:13.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:13.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:13.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:13.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:13.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:13.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:13.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:13.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:13.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:13.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:13.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:13.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:13.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:13.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:13.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:13.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:13.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:13.175][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2024-03-02 16:04:13.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:13.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:13.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:13.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:13.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:13.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:13.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:13.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:13.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:13.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:13.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:13.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:13.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:13.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:13.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:13.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:13.212][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2024-03-02 16:04:13.214][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:13.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2024-03-02 16:04:13.217][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:13.218][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:13.220][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:13.221][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:13.222][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:13.223][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:13.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:13.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:13.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:13.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:13.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:13.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:13.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:13.239][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2024-03-02 16:04:13.243][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:13.244][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:13.246][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2024-03-02 16:04:13.620][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2024-03-02 16:04:13.990][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:13.992][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2024-03-02 16:04:13.996][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2024-03-02 16:04:13.999][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2024-03-02 16:04:14.001][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:14.003][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:14.004][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:14.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:14.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:14.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:14.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:14.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:14.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:14.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:14.019][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:14.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:14.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.023][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:14.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:14.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.029][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:14.030][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:14.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.032][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.034][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:14.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:14.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.039][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:14.040][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:14.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.042][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:14.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:14.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.048][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:14.050][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:14.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:14.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:14.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:14.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:14.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.061][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:14.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:14.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:14.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:14.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.072][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:14.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:14.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.077][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:14.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.082][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:14.083][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:14.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:14.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:14.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.092][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:14.093][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:14.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.095][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:14.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:14.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.101][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:14.103][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:14.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.105][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.106][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:14.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:14.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.111][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:14.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:14.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.115][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:14.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:14.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:14.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:14.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:14.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:14.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:14.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:14.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:14.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:14.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:14.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:14.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:14.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:14.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:14.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:14.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:14.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:14.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:14.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:14.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:14.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:14.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:14.168][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2024-03-02 16:04:14.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:14.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:14.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:14.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:14.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:14.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:14.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:14.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:14.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:14.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:14.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:14.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:14.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:14.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:14.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:14.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:14.196][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2024-03-02 16:04:14.197][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:14.199][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2024-03-02 16:04:14.201][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:14.202][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:14.203][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:14.204][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:14.206][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:14.207][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:14.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:14.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:14.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:14.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:14.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:14.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:14.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:14.223][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2024-03-02 16:04:14.226][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:14.227][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:14.229][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2024-03-02 16:04:14.608][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2024-03-02 16:04:14.984][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:14.986][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2024-03-02 16:04:14.991][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2024-03-02 16:04:14.994][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2024-03-02 16:04:14.996][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:14.997][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:14.999][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:15.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:15.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:15.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:15.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:15.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:15.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:15.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:15.015][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:15.016][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:15.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.018][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:15.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:15.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.024][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:15.026][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:15.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.029][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:15.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:15.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.034][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:15.036][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:15.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.038][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:15.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:15.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.044][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:15.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:15.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.048][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:15.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:15.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.054][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:15.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:15.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:15.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:15.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.064][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:15.065][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:15.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.069][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:15.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:15.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.073][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.074][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:15.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:15.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.079][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:15.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:15.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.082][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:15.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:15.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.089][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:15.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:15.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.092][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:15.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:15.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.110][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:15.111][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:15.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.113][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:15.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:15.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.119][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:15.121][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:15.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.123][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:15.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:15.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:15.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:15.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:15.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:15.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:15.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:15.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:15.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:15.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:15.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:15.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:15.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:15.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:15.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:15.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:15.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:15.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:15.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:15.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:15.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:15.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:15.177][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2024-03-02 16:04:15.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:15.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:15.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:15.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:15.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:15.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:15.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:15.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:15.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:15.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:15.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:15.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:15.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:15.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:15.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:15.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:15.206][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2024-03-02 16:04:15.207][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:15.209][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2024-03-02 16:04:15.210][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:15.211][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:15.213][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:15.214][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:15.215][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:15.216][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:15.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:15.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:15.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:15.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:15.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:15.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:15.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:15.232][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2024-03-02 16:04:15.236][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:15.237][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:15.239][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2024-03-02 16:04:15.612][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2024-03-02 16:04:15.986][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:15.989][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2024-03-02 16:04:15.994][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2024-03-02 16:04:15.997][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2024-03-02 16:04:15.999][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:16.001][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:16.002][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:16.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:16.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:16.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:16.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:16.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:16.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:16.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:16.018][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:16.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:16.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.022][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:16.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:16.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.028][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:16.029][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:16.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.033][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:16.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:16.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.038][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:16.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:16.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.041][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:16.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:16.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.048][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:16.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:16.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.051][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:16.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:16.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:16.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.061][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:16.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:16.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.067][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:16.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:16.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.072][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:16.073][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:16.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.077][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:16.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:16.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.082][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:16.083][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:16.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:16.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:16.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.092][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:16.093][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:16.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.095][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:16.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:16.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.102][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:16.103][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:16.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.105][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:16.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:16.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.111][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:16.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:16.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.115][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:16.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:16.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:16.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:16.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:16.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:16.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:16.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:16.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:16.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:16.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:16.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:16.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:16.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:16.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:16.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:16.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:16.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:16.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:16.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:16.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:16.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:16.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:16.169][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2024-03-02 16:04:16.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:16.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:16.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:16.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:16.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:16.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:16.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:16.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:16.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:16.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:16.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:16.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:16.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:16.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:16.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:16.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:16.197][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2024-03-02 16:04:16.198][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:16.200][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2024-03-02 16:04:16.202][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:16.203][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:16.204][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:16.205][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:16.207][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:16.208][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:16.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:16.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:16.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:16.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:16.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:16.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:16.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:16.224][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2024-03-02 16:04:16.228][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:16.229][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:16.231][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2024-03-02 16:04:16.606][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2024-03-02 16:04:16.978][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:16.981][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2024-03-02 16:04:16.985][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2024-03-02 16:04:16.988][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2024-03-02 16:04:16.990][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:17.001][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:17.003][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:17.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:17.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:17.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:17.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:17.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:17.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:17.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:17.019][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:17.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:17.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.022][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:17.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:17.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.028][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:17.030][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:17.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.032][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.033][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:17.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:17.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.038][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:17.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:17.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.042][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:17.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:17.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.048][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:17.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:17.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:17.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:17.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:17.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:17.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.061][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:17.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:17.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:17.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:17.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.072][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:17.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.077][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:17.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.082][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:17.083][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:17.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.086][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:17.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:17.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.092][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:17.093][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:17.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.095][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:17.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:17.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.102][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:17.103][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:17.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.105][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:17.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:17.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.111][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:17.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:17.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.115][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:17.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:17.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:17.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:17.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:17.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:17.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:17.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:17.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:17.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:17.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:17.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:17.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:17.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:17.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:17.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:17.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:17.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:17.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:17.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:17.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:17.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:17.169][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2024-03-02 16:04:17.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:17.185][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:17.189][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:17.191][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:17.193][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:04:17.576][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:04:17.947][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:17.950][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2024-03-02 16:04:17.955][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2024-03-02 16:04:17.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:17.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:17.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:17.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:17.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:17.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:17.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:17.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:17.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:17.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:17.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:17.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:17.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:17.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:17.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:17.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:17.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:17.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:18.000][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2024-03-02 16:04:18.001][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:18.003][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2024-03-02 16:04:18.005][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:18.006][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:18.007][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:18.008][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:18.010][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:18.011][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:18.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:18.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:18.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:18.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:18.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:18.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:18.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:18.027][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2024-03-02 16:04:18.030][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:18.031][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:18.033][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2024-03-02 16:04:18.433][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2024-03-02 16:04:18.809][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:18.811][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2024-03-02 16:04:18.816][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2024-03-02 16:04:18.819][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2024-03-02 16:04:18.821][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:18.822][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:18.824][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:18.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:18.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:18.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:18.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:18.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:18.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:18.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:18.840][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:18.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:18.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.843][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:18.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:18.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.850][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:18.851][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:18.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.853][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:18.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:18.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.860][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:18.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:18.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.863][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.865][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:18.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:18.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:18.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:18.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.873][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:18.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:18.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.880][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:18.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:18.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.883][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:18.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:18.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.890][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:18.891][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:18.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.893][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.895][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:18.896][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:18.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.899][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.900][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:18.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:18.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.905][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:18.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:18.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.909][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:18.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:18.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.915][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:18.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:18.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.919][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:18.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.936][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:18.937][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:18.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.940][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:18.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:18.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.946][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:18.947][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:18.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.950][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:18.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:18.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:18.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:18.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:18.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:18.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:18.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:18.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:18.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:18.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:18.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:18.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:18.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:18.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:18.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:18.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:18.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:18.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:18.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:18.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:18.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:18.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:19.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:19.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:19.004][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2024-03-02 16:04:19.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:19.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:19.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:19.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:19.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:19.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:19.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:19.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:19.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:19.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:19.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:19.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:19.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:19.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:19.033][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2024-03-02 16:04:19.034][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:19.036][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2024-03-02 16:04:19.038][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:19.039][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:19.040][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:19.041][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:19.043][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:19.044][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:19.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:19.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:19.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:19.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:19.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:19.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:19.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:19.059][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2024-03-02 16:04:19.063][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:19.064][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:19.066][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2024-03-02 16:04:19.442][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2024-03-02 16:04:19.816][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:19.819][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2024-03-02 16:04:19.823][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2024-03-02 16:04:19.826][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2024-03-02 16:04:19.828][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:19.829][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:19.831][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:19.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:19.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:19.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:19.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:19.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:19.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:19.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:19.847][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:19.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:19.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.851][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:19.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:19.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.857][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:19.859][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:19.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.861][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.862][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:19.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:19.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.867][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:19.869][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:19.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.871][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:19.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:19.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.878][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:19.879][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:19.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.881][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:19.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:19.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.888][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:19.889][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:19.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.891][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:19.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:19.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.898][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:19.899][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:19.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.901][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.903][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:19.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:19.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.906][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.908][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:19.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:19.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:19.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:19.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.916][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:19.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:19.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.922][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:19.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:19.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.926][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:19.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:19.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.932][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:19.934][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:19.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.936][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.937][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:19.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:19.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.942][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:19.944][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:19.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:19.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:19.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:19.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:19.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:19.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:19.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:19.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:19.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:19.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:19.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:19.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:19.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:19.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:19.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:19.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:19.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:19.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:19.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:19.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:19.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:19.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:19.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:19.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:19.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:20.000][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2024-03-02 16:04:20.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:20.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:20.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:20.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:20.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:20.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:20.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:20.016][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:20.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:20.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:20.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:20.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:20.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:20.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:20.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:20.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:20.041][private$selectFields]
biodb.TRACE[2024-03-02 16:04:20.042][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:20.043][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:20.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:20.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.053][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:20.056][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:20.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.060][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.062][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:20.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.085][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-03-02 16:04:20.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:20.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:20.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:20.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:20.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:20.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:20.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:20.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:20.109][private$selectFields]
biodb.TRACE[2024-03-02 16:04:20.110][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:20.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:20.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:20.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.117][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.121][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.122][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:20.124][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:20.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.128][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.129][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:20.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.145][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-03-02 16:04:20.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:20.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:20.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:20.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:20.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:20.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:20.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:20.169][private$selectFields]
biodb.TRACE[2024-03-02 16:04:20.170][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:20.171][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:20.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:20.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.177][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.181][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.183][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:20.184][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:20.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.188][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.189][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:20.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:20.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-03-02 16:04:20.206][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:20.207][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 16:04:20.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:20.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:20.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:20.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:20.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:20.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:20.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:20.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:20.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:20.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:20.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:20.359][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:20.363][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:20.364][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:20.367][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:04:20.745][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:04:21.115][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:21.118][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content"
biodb.TRACE[2024-03-02 16:04:21.123][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.request"
biodb.DEBUG[2024-03-02 16:04:21.127][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:21.132][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:21.133][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:21.135][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:04:21.511][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:04:21.891][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:21.894][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content"
biodb.TRACE[2024-03-02 16:04:21.899][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.request"
biodb.DEBUG[2024-03-02 16:04:21.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:21.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:21.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:21.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:21.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:21.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:21.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:21.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:21.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:21.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:21.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:21.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:21.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:21.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:21.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:21.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:21.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:21.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:21.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:21.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:21.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:21.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:21.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:21.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:21.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:21.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:21.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:21.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:21.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:21.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:21.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:21.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:21.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:21.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:21.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:21.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:21.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:21.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:21.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:21.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:21.995][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:21.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:21.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:21.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:22.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:22.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:22.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:22.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:22.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.019][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:22.020][private$selectFields]
biodb.TRACE[2024-03-02 16:04:22.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:22.022][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:22.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:22.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.033][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:22.035][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:22.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.040][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.041][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:22.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.056][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-03-02 16:04:22.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:22.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:22.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:22.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:22.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:22.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:22.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:22.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:22.121][private$selectFields]
biodb.TRACE[2024-03-02 16:04:22.122][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:22.123][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:22.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:22.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.129][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.134][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:22.149][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:22.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.153][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.155][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:22.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.170][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:04:22.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:22.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:22.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:22.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:22.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:22.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:22.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:22.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:22.195][private$selectFields]
biodb.TRACE[2024-03-02 16:04:22.196][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:22.197][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:22.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:22.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.203][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.207][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:22.210][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:22.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.214][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.215][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:22.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:22.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:22.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:22.231][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-03-02 16:04:22.233][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:22.234][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:04:22.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:22.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:22.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:22.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:22.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:22.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:22.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:22.251][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:22.255][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:22.256][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:22.258][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:04:22.642][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:04:23.018][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:23.021][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2024-03-02 16:04:23.026][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2024-03-02 16:04:23.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:23.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:23.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:23.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:23.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:23.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:23.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:23.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:23.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:23.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:23.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:23.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:23.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:23.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:23.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:23.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:23.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:23.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:23.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:23.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:23.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:23.071][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2024-03-02 16:04:23.072][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:23.074][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2024-03-02 16:04:23.075][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:23.077][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:23.078][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:23.079][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:23.080][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:23.081][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:23.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:23.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:23.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:23.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:23.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:23.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:23.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:23.098][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2024-03-02 16:04:23.101][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:23.102][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:23.104][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2024-03-02 16:04:23.474][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2024-03-02 16:04:23.853][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:23.861][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2024-03-02 16:04:23.865][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2024-03-02 16:04:23.868][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2024-03-02 16:04:23.870][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:23.871][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:23.872][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:23.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:23.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:23.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:23.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:23.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:23.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:23.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:23.888][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:23.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:23.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.892][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:23.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:23.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.898][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:23.899][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:23.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.902][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.903][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:23.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:23.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.908][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:23.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:23.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.912][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:23.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:23.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:23.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:23.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.922][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:23.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:23.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:23.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:23.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.931][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:23.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:23.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.938][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:23.939][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:23.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.941][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.943][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:23.944][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:23.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.948][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:23.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:23.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.952][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:23.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:23.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.956][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:23.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:23.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.962][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:23.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:23.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.966][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:23.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:23.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.972][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:23.973][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:23.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.976][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:23.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:23.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.982][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:23.983][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:23.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.985][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:23.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:23.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:23.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:23.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:23.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:23.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:23.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:23.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:24.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:24.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:24.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:24.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:24.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:24.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:24.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:24.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:24.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:24.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:24.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:24.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:24.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:24.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:24.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:24.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:24.041][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2024-03-02 16:04:24.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:24.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:24.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:24.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:24.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:24.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:24.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:24.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:24.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:24.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:24.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:24.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:24.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:24.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:24.069][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2024-03-02 16:04:24.070][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:24.072][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2024-03-02 16:04:24.074][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:24.075][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:24.077][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:24.078][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:24.079][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:24.080][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:24.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:24.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:24.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:24.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:24.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:24.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:24.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:24.096][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2024-03-02 16:04:24.100][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:24.101][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:24.103][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2024-03-02 16:04:24.476][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2024-03-02 16:04:24.855][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:24.858][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2024-03-02 16:04:24.862][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2024-03-02 16:04:24.865][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2024-03-02 16:04:24.867][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:24.868][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:24.870][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:24.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:24.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:24.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:24.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:24.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:24.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:24.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:24.886][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:24.887][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:24.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.889][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:24.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:24.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.895][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:24.897][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:24.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.899][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:24.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:24.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.905][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:24.907][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:24.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.909][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:24.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:24.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.916][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:24.917][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:24.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.919][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:24.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:24.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.925][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:24.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:24.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.929][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:24.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:24.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:24.937][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:24.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.939][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.940][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:24.942][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:24.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.944][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.945][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:24.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:24.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.950][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:24.951][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:24.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.954][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:24.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:24.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.960][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:24.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:24.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.964][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:24.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:24.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.970][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:24.971][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:24.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.974][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.975][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:24.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:24.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.980][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:24.981][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:24.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.983][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:24.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:24.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:24.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:24.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:24.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:24.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:24.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:24.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:25.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:25.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:25.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:25.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:25.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:25.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:25.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:25.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:25.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:25.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:25.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:25.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:25.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:25.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:25.045][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2024-03-02 16:04:25.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:25.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:25.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:25.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:25.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:25.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:25.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:25.061][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:25.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:25.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:25.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:25.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:25.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:25.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:25.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:25.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:25.086][private$selectFields]
biodb.TRACE[2024-03-02 16:04:25.087][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:25.088][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:25.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:25.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.094][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.099][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:25.101][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:25.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.106][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.107][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:25.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.123][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:04:25.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:25.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:25.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:25.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:25.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:25.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:25.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:25.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:25.147][private$selectFields]
biodb.TRACE[2024-03-02 16:04:25.148][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:25.149][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:25.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:25.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.155][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.160][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:25.162][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:25.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.167][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.168][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:25.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-03-02 16:04:25.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:25.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:25.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:25.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:25.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:25.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:25.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:25.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.210][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:25.211][private$selectFields]
biodb.TRACE[2024-03-02 16:04:25.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:25.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:25.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:25.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.220][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.224][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:25.227][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:25.228][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.232][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:25.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:25.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:25.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:25.251][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-03-02 16:04:25.253][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:25.254][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:04:25.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:25.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:25.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:25.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:25.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:25.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:25.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:25.271][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:25.276][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:25.277][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:25.280][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:04:25.656][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:04:26.026][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:26.028][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2024-03-02 16:04:26.033][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2024-03-02 16:04:26.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:26.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:26.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:26.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:26.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:26.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:26.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:26.050][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2024-03-02 16:04:26.051][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:26.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2024-03-02 16:04:26.055][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:26.056][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:26.057][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:26.058][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:26.060][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:26.061][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:26.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:26.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:26.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:26.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:26.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:26.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:26.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:26.076][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2024-03-02 16:04:26.080][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:26.081][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:26.083][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2024-03-02 16:04:26.456][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2024-03-02 16:04:26.830][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:26.833][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2024-03-02 16:04:26.837][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2024-03-02 16:04:26.841][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2024-03-02 16:04:26.843][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:26.844][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:26.845][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:26.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:26.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:26.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:26.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:26.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:26.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:26.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:26.862][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:26.863][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:26.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.865][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:26.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:26.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.872][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:26.873][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:26.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.875][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.877][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:26.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:26.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.882][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:26.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:26.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.885][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:26.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:26.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.892][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:26.893][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:26.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.895][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:26.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:26.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.912][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:26.913][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:26.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.915][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:26.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:26.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.922][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:26.923][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:26.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.925][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.927][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:26.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:26.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.932][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:26.933][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:26.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.935][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.936][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:26.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:26.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.941][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:26.943][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:26.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.945][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:26.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:26.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.951][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:26.953][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:26.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.955][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:26.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:26.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.961][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:26.963][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:26.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.965][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:26.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:26.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.971][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:26.972][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:26.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.975][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:26.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:26.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:26.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:26.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:26.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:26.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:26.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:26.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:26.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:27.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:27.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:27.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:27.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:27.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:27.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:27.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:27.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:27.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:27.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:27.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:27.029][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2024-03-02 16:04:27.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:27.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:27.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:27.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:27.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:27.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:27.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:27.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:27.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:27.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:27.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:27.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:27.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:27.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:27.057][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2024-03-02 16:04:27.058][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:27.060][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2024-03-02 16:04:27.061][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:27.063][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:27.064][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:27.065][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:27.066][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:27.068][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:27.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:27.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:27.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:27.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:27.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:27.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:27.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:27.084][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2024-03-02 16:04:27.087][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:27.088][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:27.090][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2024-03-02 16:04:27.465][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2024-03-02 16:04:27.841][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:27.844][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2024-03-02 16:04:27.848][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2024-03-02 16:04:27.852][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2024-03-02 16:04:27.854][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:27.855][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:27.857][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:27.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:27.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:27.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:27.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:27.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:27.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:27.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:27.873][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:27.874][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:27.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.876][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:27.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:27.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.883][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:27.884][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:27.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.886][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.888][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:27.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:27.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.893][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:27.894][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:27.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.896][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:27.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:27.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:27.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:27.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.906][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:27.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:27.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.913][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:27.914][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:27.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.916][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:27.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:27.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.923][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:27.924][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:27.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.926][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.928][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:27.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:27.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.932][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.933][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:27.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:27.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:27.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:27.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.942][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:27.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:27.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.948][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:27.949][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:27.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.952][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:27.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:27.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.958][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:27.960][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:27.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.962][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.963][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:27.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:27.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.968][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:27.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:27.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.972][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:27.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:27.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:27.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:27.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:27.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:27.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:27.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:27.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:27.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:27.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:27.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:27.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:27.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:28.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:28.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:28.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:28.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:28.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:28.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:28.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:28.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:28.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:28.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:28.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:28.027][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2024-03-02 16:04:28.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:28.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:28.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:28.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:28.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:28.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:28.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:28.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:28.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:28.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:28.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:28.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:28.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:28.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:28.064][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2024-03-02 16:04:28.065][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:28.067][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2024-03-02 16:04:28.069][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:28.070][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:28.071][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:28.072][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:28.074][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:28.075][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:28.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:28.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:28.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:28.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:28.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:28.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:28.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:28.091][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2024-03-02 16:04:28.094][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:28.095][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:28.097][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2024-03-02 16:04:28.471][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2024-03-02 16:04:28.847][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:28.850][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2024-03-02 16:04:28.854][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2024-03-02 16:04:28.857][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2024-03-02 16:04:28.859][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:28.861][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:28.862][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:28.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:28.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:28.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:28.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:28.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:28.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:28.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:28.878][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:28.879][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:28.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.882][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:28.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:28.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.888][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:28.889][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:28.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.891][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.893][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:28.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:28.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.898][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:28.899][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:28.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.901][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.903][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:28.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:28.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.908][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:28.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:28.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.911][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:28.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:28.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:28.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:28.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.921][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:28.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:28.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.928][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:28.929][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:28.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.931][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.933][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:28.934][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:28.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.936][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.938][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:28.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:28.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.943][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:28.944][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:28.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:28.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:28.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.953][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:28.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:28.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.956][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:28.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.963][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:28.964][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:28.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.966][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:28.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:28.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.973][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:28.974][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:28.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.976][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:28.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:28.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:28.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:28.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:28.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:28.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:28.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:28.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:28.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:28.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:28.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:29.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:29.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:29.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:29.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:29.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:29.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:29.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:29.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:29.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:29.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:29.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:29.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:29.032][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2024-03-02 16:04:29.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:29.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:29.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:29.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:29.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:29.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:29.049][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:29.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.076][private$selectFields]
biodb.TRACE[2024-03-02 16:04:29.077][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:29.078][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:29.079][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.081][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.084][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.089][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.092][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.098][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:29.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.114][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-03-02 16:04:29.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.139][private$selectFields]
biodb.TRACE[2024-03-02 16:04:29.140][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:29.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:29.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.147][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.152][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.154][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.159][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.160][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:29.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.177][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-03-02 16:04:29.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.202][private$selectFields]
biodb.TRACE[2024-03-02 16:04:29.203][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:29.204][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:29.206][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.223][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.228][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.230][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.231][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.235][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.236][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:29.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.252][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-03-02 16:04:29.253][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:29.254][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 16:04:29.265][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:29.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:29.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.270][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:29.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.275][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:29.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:29.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 16:04:29.284][biodb::testThat]
biodb.INFO [2024-03-02 16:04:29.285][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-03-02 16:04:29.286][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:04:29.287][biodb::testThat]
biodb.TRACE[2024-03-02 16:04:29.290][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:04:29.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:04:29.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.295][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:04:29.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:04:29.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.300][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:04:29.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:04:29.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:29.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:29.381][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:29.385][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:29.386][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-03-02 16:04:29.388][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:29.389][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-03-02 16:04:29.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:29.421][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:29.425][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:29.426][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-03-02 16:04:29.428][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:29.429][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-03-02 16:04:29.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:29.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:29.487][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:29.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.513][private$selectFields]
biodb.TRACE[2024-03-02 16:04:29.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:29.516][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:29.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.522][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.526][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.529][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.534][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.535][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:29.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-03-02 16:04:29.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.579][private$selectFields]
biodb.TRACE[2024-03-02 16:04:29.580][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:29.581][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:29.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.587][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.590][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.592][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.595][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.599][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.601][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:29.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.617][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:04:29.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.647][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.648][private$selectFields]
biodb.TRACE[2024-03-02 16:04:29.649][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:29.650][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:29.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.653][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.654][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.656][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.661][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.664][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.668][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.670][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:29.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.686][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-03-02 16:04:29.687][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:29.688][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:04:29.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:29.705][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:29.709][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:29.711][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-03-02 16:04:29.712][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:29.714][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-03-02 16:04:29.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:29.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:29.772][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:29.776][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:29.778][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-03-02 16:04:29.779][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:29.781][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-03-02 16:04:29.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:29.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:29.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:29.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:29.867][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:29.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.893][private$selectFields]
biodb.TRACE[2024-03-02 16:04:29.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:29.896][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:29.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.900][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.902][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.907][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.909][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.914][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.916][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:29.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.932][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:04:29.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:29.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:29.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:29.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:29.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:29.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.958][private$selectFields]
biodb.TRACE[2024-03-02 16:04:29.959][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:29.960][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:29.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.966][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.971][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.973][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:29.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.978][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.979][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:29.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:29.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:29.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:29.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-03-02 16:04:29.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:29.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:29.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:30.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:30.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:30.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:30.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:30.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.019][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:30.020][private$selectFields]
biodb.TRACE[2024-03-02 16:04:30.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:30.022][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:30.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:30.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.033][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:30.035][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:30.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.044][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.046][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:30.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:30.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-03-02 16:04:30.063][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:30.064][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:04:30.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:30.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:30.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:30.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:30.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:30.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:30.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:30.081][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:30.085][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:30.087][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-03-02 16:04:30.088][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:30.090][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-03-02 16:04:30.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:30.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:30.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:30.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:30.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:30.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:30.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:30.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:30.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:30.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:30.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:30.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:30.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:30.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:30.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:30.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:30.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:30.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:30.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:30.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:30.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:30.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:30.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:30.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:30.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:30.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:30.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:30.174][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:30.178][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:30.180][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:30.182][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:04:36.829][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:04:37.327][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:37.329][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2024-03-02 16:04:37.334][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2024-03-02 16:04:37.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:37.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:37.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:37.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:37.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:37.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:37.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:37.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:37.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:37.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:37.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:37.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:37.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:37.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:37.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:37.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:37.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:37.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:37.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:37.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:37.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:37.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:37.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:37.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:37.383][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2024-03-02 16:04:37.384][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:37.386][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2024-03-02 16:04:37.387][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:37.389][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:37.390][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:37.391][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:37.393][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:37.394][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:37.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:37.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:37.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:37.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:37.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:37.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:37.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:37.410][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2024-03-02 16:04:37.414][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:37.415][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:37.417][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2024-03-02 16:04:37.792][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2024-03-02 16:04:38.165][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:38.167][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2024-03-02 16:04:38.172][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2024-03-02 16:04:38.175][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2024-03-02 16:04:38.177][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:38.179][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:38.180][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:38.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:38.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:38.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:38.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:38.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:38.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:38.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:38.196][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:38.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:38.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.200][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:38.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.206][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:38.207][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:38.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.210][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:38.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.216][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:38.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:38.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.220][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:38.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:38.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.226][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:38.227][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:38.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.229][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:38.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.236][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:38.237][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:38.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.239][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:38.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:38.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.246][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:38.247][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:38.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.249][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.251][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:38.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:38.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.256][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:38.257][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:38.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.259][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.261][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:38.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:38.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:38.267][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:38.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.269][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:38.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:38.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.276][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:38.277][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:38.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.279][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:38.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:38.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.286][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:38.288][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:38.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.290][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.292][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:38.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:38.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:38.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:38.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.300][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:38.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:38.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:38.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:38.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:38.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:38.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:38.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:38.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:38.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:38.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:38.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:38.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:38.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:38.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:38.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:38.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:38.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:38.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:38.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:38.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:38.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:38.366][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2024-03-02 16:04:38.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:38.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:38.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:38.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:38.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:38.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:38.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:38.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:38.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:38.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:38.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:38.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:38.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:38.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:38.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:38.394][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2024-03-02 16:04:38.395][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:38.397][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2024-03-02 16:04:38.398][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:38.400][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:38.401][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:38.402][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:38.403][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:38.404][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:38.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:38.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:38.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:38.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:38.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:38.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:38.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:38.420][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2024-03-02 16:04:38.424][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:38.425][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:38.426][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2024-03-02 16:04:38.797][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2024-03-02 16:04:39.169][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:39.171][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2024-03-02 16:04:39.176][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2024-03-02 16:04:39.180][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2024-03-02 16:04:39.182][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:39.183][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:39.185][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:39.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:39.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:39.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:39.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:39.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:39.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:39.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:39.200][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:39.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:39.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.204][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:39.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.210][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:39.211][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:39.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.214][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.215][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:39.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.220][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:39.221][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:39.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.223][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:39.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.230][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:39.231][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:39.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.233][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:39.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:39.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.240][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:39.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:39.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.243][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:39.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:39.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.249][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:39.251][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:39.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.253][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.255][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:39.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:39.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.259][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:39.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:39.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.263][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.264][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:39.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:39.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:39.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:39.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.273][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:39.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:39.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.279][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:39.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:39.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.283][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:39.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:39.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.290][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:39.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:39.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.293][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.295][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:39.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:39.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:39.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:39.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.303][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:39.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:39.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:39.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:39.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:39.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:39.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:39.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:39.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:39.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:39.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:39.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:39.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:39.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:39.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:39.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:39.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:39.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:39.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:39.359][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2024-03-02 16:04:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:39.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:39.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:39.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:39.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:39.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:39.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:39.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:39.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:39.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:39.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:39.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:39.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:39.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:39.389][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2024-03-02 16:04:39.390][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:39.392][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2024-03-02 16:04:39.393][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:39.395][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:39.396][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:39.397][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:39.399][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:39.400][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:39.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:39.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:39.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:39.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:39.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:39.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:39.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:39.417][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2024-03-02 16:04:39.420][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:39.422][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:39.423][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2024-03-02 16:04:39.801][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2024-03-02 16:04:40.174][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:40.177][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2024-03-02 16:04:40.181][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2024-03-02 16:04:40.184][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2024-03-02 16:04:40.186][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:40.188][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:40.189][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:40.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:40.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:40.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:40.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:40.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:40.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:40.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:40.205][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:40.207][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:40.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.209][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:40.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.215][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:40.217][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:40.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.219][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.221][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:40.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.226][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:40.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:40.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.229][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:40.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:40.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:40.248][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:40.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.250][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:40.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:40.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:40.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:40.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.260][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:40.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.266][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:40.268][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:40.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.270][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.271][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:40.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:40.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.276][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:40.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:40.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.280][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.282][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:40.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:40.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.290][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.297][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:40.298][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:40.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.300][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:40.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:40.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.307][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:40.308][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:40.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.310][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:40.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:40.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.316][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:40.318][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:40.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.320][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:40.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:40.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:40.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:40.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:40.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:40.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:40.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:40.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:40.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:40.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:40.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:40.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:40.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:40.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:40.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:40.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:40.375][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2024-03-02 16:04:40.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:40.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:40.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:40.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:40.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:40.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:40.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:40.391][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:40.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:40.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:40.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:40.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:40.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:40.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:40.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:40.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.417][private$selectFields]
biodb.TRACE[2024-03-02 16:04:40.418][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:40.419][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:40.420][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.425][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.430][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.432][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.437][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.439][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:40.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.456][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-03-02 16:04:40.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:40.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:40.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:40.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:40.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:40.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:40.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:40.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.482][private$selectFields]
biodb.TRACE[2024-03-02 16:04:40.484][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:40.485][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:40.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.491][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.496][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.499][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.504][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.505][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:40.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.521][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2024-03-02 16:04:40.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:40.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:40.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:40.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:40.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:40.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:40.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:40.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.546][private$selectFields]
biodb.TRACE[2024-03-02 16:04:40.547][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:40.548][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:40.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.554][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.558][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.561][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.565][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.567][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:40.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.582][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2024-03-02 16:04:40.584][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:40.585][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 16:04:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:40.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:40.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:40.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:40.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:40.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:40.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:40.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:40.674][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:40.677][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:40.679][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-03-02 16:04:40.681][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:40.682][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-03-02 16:04:40.685][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:40.689][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:40.691][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-03-02 16:04:40.692][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:40.694][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-03-02 16:04:40.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:40.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:40.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:40.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:40.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:40.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:40.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:40.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:40.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:40.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:40.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:40.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:40.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:40.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:40.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:40.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:40.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:40.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:40.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:40.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:40.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:40.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:40.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:40.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:40.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:40.778][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:40.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:40.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:40.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:40.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:40.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:40.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:40.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.803][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.805][private$selectFields]
biodb.TRACE[2024-03-02 16:04:40.806][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:40.807][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:40.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.813][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.818][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.821][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.823][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.826][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.827][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:40.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.844][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-03-02 16:04:40.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:40.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:40.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:40.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:40.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:40.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:40.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:40.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.868][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.869][private$selectFields]
biodb.TRACE[2024-03-02 16:04:40.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:40.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:40.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.877][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.882][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.884][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.889][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.890][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:40.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.906][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:04:40.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:40.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:40.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:40.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:40.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:40.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:40.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:40.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.931][private$selectFields]
biodb.TRACE[2024-03-02 16:04:40.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:40.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:40.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.939][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.943][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.945][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.946][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:40.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.950][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.952][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:40.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:40.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:40.968][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-03-02 16:04:40.969][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:40.970][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:04:40.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:40.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:40.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:40.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:40.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:40.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:40.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:40.988][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:40.992][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:40.993][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:40.995][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:04:41.373][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:04:41.751][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:41.754][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2024-03-02 16:04:41.759][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2024-03-02 16:04:41.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:41.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:41.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:41.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:41.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:41.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:41.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:41.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:41.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:41.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:41.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:41.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:41.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:41.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:41.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:41.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:41.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:41.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:41.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:41.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:41.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:41.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:41.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:41.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:41.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:41.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:41.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:41.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:41.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:41.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:41.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:41.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:41.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:41.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:41.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:41.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:41.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:41.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:41.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:41.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:41.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:41.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:41.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:41.838][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2024-03-02 16:04:41.840][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:41.842][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2024-03-02 16:04:41.843][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:41.844][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:41.846][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:41.847][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:41.848][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:41.849][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:41.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:41.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:41.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:41.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:41.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:41.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:41.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:41.865][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2024-03-02 16:04:41.868][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:41.869][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:41.871][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2024-03-02 16:04:42.246][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2024-03-02 16:04:42.615][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:42.617][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2024-03-02 16:04:42.621][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2024-03-02 16:04:42.624][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2024-03-02 16:04:42.626][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:42.628][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:42.629][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:42.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:42.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:42.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:42.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:42.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:42.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:42.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:42.645][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:42.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:42.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.649][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:42.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:42.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.655][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:42.657][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:42.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.659][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:42.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.665][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:42.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:42.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.669][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:42.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:42.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:42.677][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:42.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.679][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:42.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:42.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.685][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:42.687][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:42.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.689][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:42.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:42.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.695][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:42.697][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:42.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.699][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.701][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:42.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:42.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.706][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:42.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:42.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.709][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.711][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.716][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:42.717][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:42.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.719][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.726][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:42.727][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:42.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.730][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.736][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:42.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:42.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.740][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.742][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.747][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:42.748][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:42.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.750][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:42.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:42.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:42.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:42.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:42.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:42.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:42.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:42.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:42.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:42.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:42.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:42.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:42.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:42.806][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2024-03-02 16:04:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:42.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:42.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:42.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:42.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:42.822][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:42.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:42.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:42.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:42.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:42.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:42.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:42.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:42.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:42.848][private$selectFields]
biodb.TRACE[2024-03-02 16:04:42.850][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:42.851][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:42.852][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:42.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.857][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.862][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:42.865][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:42.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.870][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.871][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.888][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-03-02 16:04:42.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:42.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:42.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:42.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:42.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:42.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:42.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:42.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:42.913][private$selectFields]
biodb.TRACE[2024-03-02 16:04:42.915][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:42.916][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:42.917][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:42.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.922][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.927][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:42.929][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:42.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.934][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.936][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:42.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.960][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-03-02 16:04:42.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:42.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:42.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:42.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:42.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:42.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:42.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:42.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:42.985][private$selectFields]
biodb.TRACE[2024-03-02 16:04:42.986][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:42.987][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:42.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:42.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.993][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:42.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:42.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:42.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:43.000][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:43.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:43.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:43.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.005][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.006][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:43.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:43.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:43.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:43.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:43.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.022][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2024-03-02 16:04:43.024][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:43.025][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:04:43.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:43.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:43.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:43.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:43.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:43.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:43.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:43.042][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:43.046][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:43.047][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-03-02 16:04:43.049][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:43.050][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-03-02 16:04:43.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:43.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:43.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:43.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:43.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:43.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:43.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:43.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:43.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:43.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:43.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:43.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:43.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:43.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:43.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:43.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:43.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:43.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:43.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:43.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:43.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:43.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:43.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:43.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:43.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:43.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:43.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:43.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:43.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:43.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:43.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:43.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:43.149][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2024-03-02 16:04:43.150][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:43.152][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2024-03-02 16:04:43.154][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:43.155][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:43.156][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:43.158][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:43.159][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:43.160][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:43.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:43.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:43.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:43.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:43.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:43.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:43.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:43.176][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2024-03-02 16:04:43.180][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:43.181][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:43.183][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2024-03-02 16:04:43.558][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2024-03-02 16:04:43.931][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:43.934][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2024-03-02 16:04:43.938][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2024-03-02 16:04:43.942][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2024-03-02 16:04:43.944][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:43.945][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:43.946][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:43.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:43.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:43.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:43.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:43.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:43.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:43.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:43.963][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:43.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:43.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.967][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:43.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:43.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.974][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:43.975][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:43.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.977][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:43.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:43.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.984][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:43.985][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:43.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.988][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:43.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:43.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.994][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:43.995][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:43.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:43.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:43.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:44.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:44.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:44.006][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:44.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.008][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:44.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:44.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.014][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:44.016][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:44.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.018][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.020][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:44.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:44.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.023][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.025][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:44.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:44.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.030][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:44.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:44.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.034][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:44.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.040][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:44.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:44.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.044][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:44.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:44.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.050][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:44.052][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:44.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.054][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.056][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:44.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:44.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.061][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:44.062][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:44.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.064][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:44.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:44.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:44.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:44.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:44.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:44.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:44.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:44.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:44.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:44.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:44.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:44.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:44.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:44.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:44.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:44.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:44.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:44.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:44.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:44.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:44.129][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2024-03-02 16:04:44.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:44.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:44.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:44.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:44.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:44.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:44.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:44.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:44.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:44.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:44.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:44.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:44.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:44.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:44.158][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2024-03-02 16:04:44.159][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:44.161][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2024-03-02 16:04:44.163][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:44.164][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:44.166][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:44.167][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:44.169][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:44.170][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:44.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:44.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:44.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:44.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:44.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:44.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:44.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:44.187][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2024-03-02 16:04:44.190][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:44.192][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:44.193][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2024-03-02 16:04:44.567][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2024-03-02 16:04:44.937][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:44.940][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2024-03-02 16:04:44.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2024-03-02 16:04:44.947][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2024-03-02 16:04:44.948][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:44.950][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:44.951][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:44.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:44.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:44.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:44.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:44.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:44.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:44.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:44.967][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:44.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:44.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.971][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:44.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:44.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.977][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:44.978][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:44.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.980][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:44.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:44.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.987][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:44.988][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:44.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.990][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:44.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:44.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:44.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:44.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:44.998][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:44.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.000][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:45.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:45.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.006][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:45.008][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:45.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.010][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:45.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:45.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.016][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:45.017][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:45.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.020][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.021][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:45.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:45.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.025][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.026][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:45.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:45.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:45.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:45.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.035][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:45.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:45.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.041][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:45.042][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:45.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.045][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:45.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:45.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.051][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:45.053][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:45.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.055][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.056][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:45.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:45.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.061][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:45.062][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:45.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.065][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:45.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:45.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:45.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:45.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:45.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:45.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:45.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:45.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:45.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:45.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:45.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:45.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:45.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:45.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:45.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:45.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:45.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:45.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:45.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:45.119][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2024-03-02 16:04:45.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:45.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:45.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:45.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:45.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:45.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:45.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:45.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:45.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:45.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:45.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:45.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:45.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:45.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:45.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:45.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:45.147][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2024-03-02 16:04:45.149][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:45.151][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2024-03-02 16:04:45.152][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:45.153][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:45.155][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:45.156][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:45.157][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:45.158][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:45.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:45.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:45.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:45.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:45.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:45.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:45.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:45.175][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2024-03-02 16:04:45.178][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:45.179][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:45.181][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2024-03-02 16:04:45.550][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2024-03-02 16:04:46.013][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:46.016][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2024-03-02 16:04:46.020][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2024-03-02 16:04:46.024][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2024-03-02 16:04:46.025][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:46.027][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:46.028][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:46.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:46.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:46.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:46.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:46.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:46.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:46.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:46.045][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:46.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:46.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.048][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:46.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:46.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.055][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:46.056][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:46.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.060][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:46.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.066][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:46.067][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:46.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.070][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:46.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:46.078][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:46.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.080][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:46.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:46.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.086][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:46.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:46.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.100][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:46.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.107][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:46.108][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:46.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.111][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:46.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:46.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.117][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:46.118][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:46.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.121][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.122][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:46.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:46.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.127][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:46.128][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:46.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.131][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:46.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:46.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.137][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:46.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:46.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.141][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:46.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:46.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.147][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:46.148][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:46.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.151][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.152][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:46.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:46.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.157][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:46.158][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:46.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.160][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:46.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:46.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:46.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:46.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:46.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:46.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:46.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:46.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:46.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:46.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:46.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:46.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:46.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:46.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:46.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:46.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:46.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:46.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:46.215][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2024-03-02 16:04:46.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:46.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:46.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:46.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:46.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:46.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:46.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:46.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:46.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:46.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:46.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:46.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:46.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:46.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:46.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:46.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:46.243][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2024-03-02 16:04:46.244][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:46.246][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2024-03-02 16:04:46.248][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:46.249][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:46.250][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:46.252][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:46.253][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:46.254][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:46.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:46.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:46.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:46.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:46.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:46.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:46.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:46.270][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2024-03-02 16:04:46.274][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:46.275][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:46.277][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2024-03-02 16:04:46.646][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2024-03-02 16:04:47.021][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:47.023][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2024-03-02 16:04:47.028][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2024-03-02 16:04:47.031][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2024-03-02 16:04:47.033][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:47.034][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:47.035][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:47.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:47.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:47.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:47.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:47.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:47.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:47.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:47.051][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:47.053][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:47.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.055][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:47.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:47.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.062][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:47.063][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:47.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.066][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.067][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:47.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:47.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.072][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:47.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:47.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:47.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:47.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.082][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:47.084][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:47.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.086][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:47.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:47.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:47.094][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:47.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:47.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:47.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.103][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:47.104][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:47.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.106][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.108][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:47.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:47.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.111][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.113][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:47.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:47.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.118][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:47.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:47.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.122][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:47.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:47.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.128][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:47.130][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:47.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.132][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:47.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:47.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.139][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:47.140][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:47.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.142][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.144][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:47.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:47.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.149][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:47.150][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:47.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.152][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:47.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:47.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:47.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:47.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:47.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:47.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:47.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:47.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:47.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:47.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:47.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:47.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:47.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:47.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:47.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:47.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:47.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:47.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:47.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:47.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:47.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:47.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:47.208][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2024-03-02 16:04:47.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:47.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:47.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:47.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:47.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:47.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:47.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:47.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:47.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:47.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:47.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:47.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:47.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:47.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:47.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:47.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:47.237][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2024-03-02 16:04:47.238][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:47.248][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2024-03-02 16:04:47.250][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:47.251][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:47.252][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:47.254][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:47.255][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:47.256][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:47.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:47.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:47.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:47.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:47.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:47.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:47.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:47.272][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2024-03-02 16:04:47.275][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:47.276][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:47.278][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2024-03-02 16:04:47.657][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2024-03-02 16:04:48.040][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:48.043][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2024-03-02 16:04:48.047][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2024-03-02 16:04:48.050][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2024-03-02 16:04:48.052][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:48.054][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:48.055][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:48.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:48.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:48.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:48.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:48.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:48.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:48.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:48.071][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:48.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:48.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.075][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:48.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:48.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.081][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:48.083][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:48.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.086][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:48.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:48.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.091][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:48.093][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:48.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.095][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:48.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:48.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.101][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:48.103][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:48.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.105][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:48.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:48.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.112][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:48.113][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:48.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.115][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:48.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:48.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.122][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:48.123][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:48.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.125][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.127][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:48.128][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:48.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.130][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.132][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:48.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:48.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.137][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:48.138][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:48.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.140][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:48.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:48.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.147][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:48.148][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:48.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.150][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:48.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:48.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.157][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:48.158][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:48.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.160][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.162][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:48.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:48.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:48.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:48.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.171][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:48.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:48.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:48.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:48.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:48.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:48.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:48.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:48.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:48.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:48.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:48.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:48.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:48.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:48.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:48.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:48.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:48.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:48.226][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2024-03-02 16:04:48.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:48.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:48.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:48.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:48.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:48.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:48.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:48.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:48.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:48.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:48.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:48.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:48.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:48.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:48.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:48.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:48.255][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2024-03-02 16:04:48.256][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:48.258][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2024-03-02 16:04:48.260][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:48.261][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:48.262][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:48.264][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:48.265][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:48.266][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:48.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:48.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:48.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:48.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:48.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:48.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:48.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:48.282][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2024-03-02 16:04:48.286][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:48.287][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:48.289][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2024-03-02 16:04:48.670][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2024-03-02 16:04:49.049][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:49.052][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2024-03-02 16:04:49.056][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2024-03-02 16:04:49.059][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2024-03-02 16:04:49.061][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:49.063][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:49.064][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:49.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:49.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:49.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:49.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:49.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:49.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:49.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:49.080][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:49.082][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:49.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.084][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:49.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.090][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:49.092][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:49.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.094][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.095][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:49.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:49.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.100][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:49.102][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:49.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.104][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:49.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:49.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.110][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:49.112][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:49.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.114][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:49.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:49.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.121][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:49.122][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:49.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.124][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:49.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:49.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.131][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:49.132][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:49.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.134][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.136][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:49.137][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:49.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.139][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.141][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:49.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:49.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.146][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:49.147][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:49.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.149][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:49.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:49.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.155][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:49.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:49.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.159][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:49.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:49.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.176][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:49.178][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:49.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.180][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:49.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.186][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:49.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:49.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.190][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:49.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:49.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:49.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:49.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:49.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:49.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:49.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:49.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:49.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:49.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:49.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:49.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:49.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:49.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:49.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:49.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:49.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:49.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:49.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:49.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:49.245][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2024-03-02 16:04:49.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:49.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:49.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:49.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:49.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:49.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:49.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:49.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:49.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:49.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:49.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:49.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:49.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:49.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:49.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:49.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:49.273][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2024-03-02 16:04:49.274][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:49.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2024-03-02 16:04:49.278][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:49.279][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:49.280][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:49.282][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:49.283][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:49.284][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:49.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:49.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:49.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:49.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:49.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:49.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:49.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:49.300][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2024-03-02 16:04:49.303][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:49.305][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:49.306][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2024-03-02 16:04:49.680][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2024-03-02 16:04:50.057][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:50.059][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2024-03-02 16:04:50.064][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2024-03-02 16:04:50.067][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2024-03-02 16:04:50.069][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:50.070][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:50.071][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:50.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:50.087][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:50.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:50.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:50.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:50.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.097][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:50.099][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:50.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.102][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:50.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:50.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.107][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:50.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:50.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.111][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:50.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:50.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.117][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:50.118][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:50.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.121][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:50.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:50.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.127][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:50.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:50.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.131][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:50.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:50.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.137][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:50.138][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:50.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.141][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.142][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:50.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.146][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.147][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:50.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.152][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:50.153][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:50.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.156][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:50.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:50.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.162][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:50.163][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:50.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.165][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:50.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:50.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.172][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:50.173][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:50.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.176][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.177][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:50.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:50.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.182][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:50.183][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:50.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.186][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:50.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:50.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:50.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:50.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:50.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:50.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:50.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:50.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:50.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:50.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:50.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:50.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:50.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:50.240][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2024-03-02 16:04:50.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:50.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:50.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:50.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:50.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:50.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:50.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:50.256][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:50.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:50.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.282][private$selectFields]
biodb.TRACE[2024-03-02 16:04:50.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:50.284][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:50.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.290][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.295][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.296][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.297][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.302][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.303][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:50.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.327][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-03-02 16:04:50.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:50.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.352][private$selectFields]
biodb.TRACE[2024-03-02 16:04:50.353][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:50.354][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:50.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.360][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.364][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.367][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.371][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.373][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:50.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.389][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2024-03-02 16:04:50.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.412][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.413][private$selectFields]
biodb.TRACE[2024-03-02 16:04:50.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:50.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:50.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.421][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.426][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.428][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.433][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.434][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:50.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.450][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2024-03-02 16:04:50.451][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:50.452][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 16:04:50.463][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.468][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:50.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:50.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.473][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:50.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:50.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 16:04:50.482][biodb::testThat]
biodb.INFO [2024-03-02 16:04:50.483][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-03-02 16:04:50.484][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:04:50.485][biodb::testThat]
biodb.TRACE[2024-03-02 16:04:50.489][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:04:50.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:04:50.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.494][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:04:50.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:04:50.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.499][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:04:50.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:04:50.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:50.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:50.582][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:50.586][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:50.588][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-03-02 16:04:50.589][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:50.591][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-03-02 16:04:50.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:50.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:50.622][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:50.626][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:50.628][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-03-02 16:04:50.629][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:50.631][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-03-02 16:04:50.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:50.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:50.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:50.689][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:50.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:50.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.715][private$selectFields]
biodb.TRACE[2024-03-02 16:04:50.716][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:50.717][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:50.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.726][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.729][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.734][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.735][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.736][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.737][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.741][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.742][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:50.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.758][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-03-02 16:04:50.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:50.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.782][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.783][private$selectFields]
biodb.TRACE[2024-03-02 16:04:50.784][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:50.785][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:50.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.791][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.796][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.797][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.798][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.803][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.804][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:50.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.821][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:04:50.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:50.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.844][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.845][private$selectFields]
biodb.TRACE[2024-03-02 16:04:50.846][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:50.848][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:50.849][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.854][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.855][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.858][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.861][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:50.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.866][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.867][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:50.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:50.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.883][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-03-02 16:04:50.884][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:50.885][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:04:50.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:50.902][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:50.907][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:50.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-03-02 16:04:50.910][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:50.911][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-03-02 16:04:50.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:50.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:50.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:50.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:50.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:50.970][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:50.974][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:50.976][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-03-02 16:04:50.977][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:50.979][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-03-02 16:04:50.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:50.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:50.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:50.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:50.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:50.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:50.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:50.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:50.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:50.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.066][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:51.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.092][private$selectFields]
biodb.TRACE[2024-03-02 16:04:51.093][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:51.094][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:51.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.100][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.105][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.107][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.112][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.113][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:51.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.136][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:04:51.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.160][private$selectFields]
biodb.TRACE[2024-03-02 16:04:51.161][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:51.163][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:51.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.169][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.173][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.175][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.176][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.181][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.182][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.198][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-03-02 16:04:51.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.224][private$selectFields]
biodb.TRACE[2024-03-02 16:04:51.225][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:51.227][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:51.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.233][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.237][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.240][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.244][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.246][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:51.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-03-02 16:04:51.263][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:51.264][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:04:51.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:51.282][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:51.286][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:51.287][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-03-02 16:04:51.289][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:51.291][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-03-02 16:04:51.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.519][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:51.523][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:51.525][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-03-02 16:04:51.527][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:51.528][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-03-02 16:04:51.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:51.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.620][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:51.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.646][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.647][private$selectFields]
biodb.TRACE[2024-03-02 16:04:51.648][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:51.650][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:51.651][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.652][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.656][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.661][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.663][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.668][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.669][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:51.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.686][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-03-02 16:04:51.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.712][private$selectFields]
biodb.TRACE[2024-03-02 16:04:51.713][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:51.714][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:51.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.720][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.722][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.725][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.728][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.733][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.734][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:51.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.750][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-03-02 16:04:51.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.775][private$selectFields]
biodb.TRACE[2024-03-02 16:04:51.776][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:51.777][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:51.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.783][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.788][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.791][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:51.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.795][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.797][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:51.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:51.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-03-02 16:04:51.814][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:51.815][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 16:04:51.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:51.919][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:51.924][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:51.926][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-03-02 16:04:51.927][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:51.929][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-03-02 16:04:51.932][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:51.936][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:51.938][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-03-02 16:04:51.940][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:51.941][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-03-02 16:04:51.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:51.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:51.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:51.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:51.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:51.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:51.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:51.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:51.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:51.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:52.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:52.033][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:52.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.057][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.058][private$selectFields]
biodb.TRACE[2024-03-02 16:04:52.059][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:52.060][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:52.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.063][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.064][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.066][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.073][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.074][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.079][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.080][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:52.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-03-02 16:04:52.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.121][private$selectFields]
biodb.TRACE[2024-03-02 16:04:52.122][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:52.123][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:52.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.129][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.134][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.136][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.141][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.142][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:52.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.159][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:04:52.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.183][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.184][private$selectFields]
biodb.TRACE[2024-03-02 16:04:52.185][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:52.186][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:52.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.192][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.197][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.200][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.205][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.206][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-03-02 16:04:52.223][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:52.225][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:04:52.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:52.242][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:52.246][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:52.248][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-03-02 16:04:52.249][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:52.251][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-03-02 16:04:52.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:52.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:52.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:52.338][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:52.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.369][private$selectFields]
biodb.TRACE[2024-03-02 16:04:52.371][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:52.372][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:52.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.378][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.382][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.384][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.385][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.390][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.391][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:52.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.407][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:04:52.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.430][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.432][private$selectFields]
biodb.TRACE[2024-03-02 16:04:52.433][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:52.434][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:52.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.440][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.442][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.445][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.447][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.452][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.453][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:52.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.469][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-03-02 16:04:52.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.494][private$selectFields]
biodb.TRACE[2024-03-02 16:04:52.495][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:52.496][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:52.497][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.502][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.507][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.509][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.514][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.515][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:52.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.532][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-03-02 16:04:52.533][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:52.534][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:04:52.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:52.552][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:52.556][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:04:52.558][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-03-02 16:04:52.560][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:04:52.561][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-03-02 16:04:52.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:52.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:52.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:52.649][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:52.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.675][private$selectFields]
biodb.TRACE[2024-03-02 16:04:52.676][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:52.677][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:52.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.683][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.688][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.689][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.690][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.695][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.696][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:52.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.713][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-03-02 16:04:52.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.738][private$selectFields]
biodb.TRACE[2024-03-02 16:04:52.739][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:52.740][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:52.742][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.746][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.751][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.753][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.754][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.765][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.766][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:52.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.782][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-03-02 16:04:52.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:52.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.806][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.807][private$selectFields]
biodb.TRACE[2024-03-02 16:04:52.809][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:52.810][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:52.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.816][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.821][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.823][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:52.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.828][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.829][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:52.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:52.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-03-02 16:04:52.846][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:52.848][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 16:04:52.872][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:52.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.877][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:52.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.881][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:52.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:04:52.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.890][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:52.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:52.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.893][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.894][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.896][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:52.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.898][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 16:04:52.900][biodb::testThat]
biodb.INFO [2024-03-02 16:04:52.901][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-03-02 16:04:52.902][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:04:52.903][biodb::testThat]
biodb.TRACE[2024-03-02 16:04:52.907][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:04:52.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:04:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.911][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:04:52.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:04:52.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.916][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:04:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:04:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:52.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:52.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:52.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:52.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:52.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:52.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:52.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:52.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:52.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:52.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:52.997][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:53.001][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:53.002][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:53.005][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:04:53.386][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:04:53.855][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:53.858][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2024-03-02 16:04:53.863][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2024-03-02 16:04:53.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:53.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:53.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:53.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:53.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:53.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:53.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:53.883][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2024-03-02 16:04:53.884][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:53.886][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2024-03-02 16:04:53.888][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:53.889][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:53.890][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:53.892][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:53.893][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:53.894][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:53.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:53.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:53.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:53.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:53.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:53.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:53.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:53.910][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2024-03-02 16:04:53.914][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:53.915][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:53.917][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2024-03-02 16:04:54.286][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2024-03-02 16:04:54.659][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:54.661][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2024-03-02 16:04:54.665][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2024-03-02 16:04:54.669][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2024-03-02 16:04:54.671][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:54.672][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:54.674][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:54.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:54.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:54.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:54.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:54.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:54.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:54.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:54.690][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:54.691][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:54.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.694][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.701][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:54.702][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:54.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.704][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:54.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:54.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.711][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:54.712][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:54.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.714][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:54.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:54.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.721][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:54.722][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:54.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.725][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:54.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:54.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.735][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.741][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:54.742][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:54.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.745][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.746][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:54.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:54.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.763][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:54.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:54.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.767][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.768][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.773][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:54.774][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:54.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.777][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:54.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:54.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.783][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:54.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:54.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.787][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:54.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:54.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.793][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:54.795][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:54.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.797][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:54.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:54.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.803][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:54.804][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:54.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.807][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:54.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:54.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:54.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:54.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:54.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:54.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:54.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:54.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:54.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:54.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:54.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:54.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:54.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:54.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:54.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:54.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:54.862][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2024-03-02 16:04:54.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:54.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:54.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:54.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:54.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:54.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:54.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:54.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:54.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:54.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:54.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:54.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:54.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:54.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:54.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:54.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:54.891][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2024-03-02 16:04:54.892][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:54.894][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2024-03-02 16:04:54.895][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:54.897][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:54.898][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:54.899][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:54.900][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:54.901][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:54.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:54.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:54.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:54.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:54.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:54.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:54.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:54.917][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2024-03-02 16:04:54.921][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:54.922][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:54.924][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2024-03-02 16:04:55.293][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2024-03-02 16:04:55.662][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:55.664][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2024-03-02 16:04:55.669][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2024-03-02 16:04:55.672][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2024-03-02 16:04:55.674][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:55.675][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:55.676][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:55.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:55.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:55.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:55.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:55.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:55.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:55.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:55.693][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:55.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:55.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.696][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:55.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:55.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.703][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:55.704][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:55.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.706][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.708][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:55.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:55.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.713][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:55.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:55.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:55.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:55.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.723][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:55.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:55.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.726][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:55.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:55.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.733][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:55.734][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:55.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.737][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:55.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:55.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.743][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:55.745][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:55.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.747][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.748][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:55.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.753][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:55.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:55.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.757][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.758][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:55.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:55.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:55.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:55.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.767][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:55.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.774][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:55.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:55.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.777][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:55.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:55.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.784][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:55.785][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:55.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.788][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.789][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:55.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:55.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.794][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:55.795][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:55.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.798][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:55.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:55.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:55.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:55.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:55.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:55.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:55.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:55.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:55.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:55.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:55.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:55.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:55.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:55.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:55.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:55.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:55.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:55.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:55.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:55.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:55.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:55.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:55.853][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2024-03-02 16:04:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:55.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:55.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:55.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:55.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:55.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:55.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:55.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:55.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:55.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:55.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:55.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:55.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:55.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:55.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:55.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:55.882][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2024-03-02 16:04:55.883][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:55.885][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2024-03-02 16:04:55.894][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:55.896][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:55.897][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:55.899][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:55.900][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:55.901][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:55.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:55.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:55.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:55.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:55.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:55.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:55.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:55.917][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2024-03-02 16:04:55.920][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:55.922][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:55.923][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2024-03-02 16:04:56.294][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2024-03-02 16:04:56.669][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:56.672][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2024-03-02 16:04:56.677][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2024-03-02 16:04:56.680][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2024-03-02 16:04:56.682][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:56.684][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:56.685][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:56.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:56.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:56.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:56.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:56.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:56.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:56.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:56.701][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:56.702][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:56.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.705][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:56.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:56.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.711][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:56.712][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:56.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.715][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.716][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:56.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:56.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.721][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:56.722][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:56.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.725][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:56.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.731][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:56.732][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:56.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.735][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:56.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:56.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.741][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:56.743][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:56.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.745][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:56.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:56.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.751][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:56.753][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:56.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.755][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.757][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:56.758][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:56.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.760][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.762][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:56.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:56.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.767][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:56.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:56.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.770][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:56.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:56.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.777][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:56.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:56.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.781][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:56.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:56.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.787][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:56.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:56.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.791][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.792][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:56.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:56.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.797][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:56.798][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:56.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.801][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:56.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:56.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:56.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:56.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:56.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:56.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:56.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:56.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:56.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:56.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:56.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:56.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:56.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:56.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:56.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:56.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:56.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:56.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:56.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:56.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:56.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:56.857][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2024-03-02 16:04:56.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:56.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:56.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:56.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:56.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:56.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:56.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:56.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:56.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:56.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:56.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:56.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:56.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:56.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:56.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:56.885][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2024-03-02 16:04:56.886][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:56.888][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2024-03-02 16:04:56.890][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:56.891][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:56.892][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:56.894][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:56.895][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:56.896][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:56.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:56.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:56.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:56.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:56.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:56.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:56.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:56.912][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2024-03-02 16:04:56.915][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:56.917][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:56.918][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2024-03-02 16:04:57.295][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2024-03-02 16:04:57.669][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:57.671][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2024-03-02 16:04:57.675][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2024-03-02 16:04:57.678][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2024-03-02 16:04:57.680][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:57.681][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:57.683][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:57.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:57.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:57.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:57.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:57.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:57.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:57.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:57.699][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:57.700][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:57.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.702][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:57.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:57.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.709][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:57.710][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:57.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.712][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:57.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:57.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.719][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:57.720][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:57.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.722][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:57.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:57.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.729][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:57.730][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:57.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.733][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:57.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:57.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.739][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:57.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:57.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.743][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:57.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:57.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.749][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:57.751][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:57.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.753][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.754][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:57.756][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:57.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.758][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.760][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:57.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.765][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:57.766][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:57.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.768][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:57.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:57.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.775][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:57.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:57.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.778][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:57.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:57.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.818][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:57.819][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:57.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.822][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.823][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:57.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:57.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.828][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:57.829][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:57.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.832][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:57.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:57.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:57.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:57.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:57.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:57.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:57.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:57.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:57.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:57.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:57.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:57.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:57.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:57.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:57.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:57.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:57.885][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2024-03-02 16:04:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:57.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:57.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:57.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:57.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:57.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:57.901][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:04:57.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:57.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:57.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:57.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:57.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:57.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:57.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:57.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:57.926][private$selectFields]
biodb.TRACE[2024-03-02 16:04:57.927][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:57.928][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:57.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:57.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.934][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.939][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:57.942][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:57.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.947][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:57.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-03-02 16:04:57.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:57.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:57.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:57.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:57.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:57.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:57.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:57.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:57.988][private$selectFields]
biodb.TRACE[2024-03-02 16:04:57.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:57.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:57.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:57.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:57.997][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:57.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:57.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:58.002][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:58.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:58.004][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:58.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:58.010][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:58.011][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:58.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:58.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:58.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:58.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:58.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:58.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:58.031][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-03-02 16:04:58.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:58.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:58.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:58.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:58.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:58.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:58.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:58.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:58.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:58.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:58.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:58.056][private$selectFields]
biodb.TRACE[2024-03-02 16:04:58.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:04:58.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:04:58.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:58.061][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:58.065][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:58.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:58.070][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:58.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:58.072][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:04:58.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:58.077][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:58.078][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:04:58.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:58.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:58.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:58.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:58.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:58.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:58.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:58.094][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-03-02 16:04:58.096][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:04:58.097][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:04:58.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:58.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:58.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:58.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:58.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:58.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:58.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:58.114][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:04:58.118][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:58.119][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:58.122][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:04:58.498][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:04:58.870][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:58.873][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2024-03-02 16:04:58.879][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2024-03-02 16:04:58.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:58.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:58.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:58.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:58.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:58.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:58.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:58.901][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2024-03-02 16:04:58.902][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:58.904][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2024-03-02 16:04:58.906][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:58.908][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:58.909][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:58.911][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:58.912][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:58.914][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:58.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:58.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:58.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:58.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:58.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:58.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:58.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:58.931][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2024-03-02 16:04:58.934][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:58.936][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:58.938][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2024-03-02 16:04:59.314][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2024-03-02 16:04:59.693][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:04:59.695][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2024-03-02 16:04:59.700][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2024-03-02 16:04:59.703][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2024-03-02 16:04:59.705][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:04:59.707][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:04:59.709][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:04:59.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:59.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:59.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:59.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:59.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:59.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:59.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:04:59.737][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:59.738][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:59.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.741][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:59.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:59.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.747][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:59.748][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:59.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.750][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.752][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:04:59.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:04:59.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.756][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:59.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:59.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.760][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.761][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:04:59.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:04:59.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.766][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:59.767][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:59.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.770][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:04:59.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:04:59.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.776][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:59.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:59.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.780][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:04:59.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:04:59.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.786][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:59.787][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:04:59.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.789][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.791][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:59.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:59.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.794][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.796][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:04:59.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:59.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:59.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:59.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.804][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:59.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:04:59.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.811][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:59.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:59.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.814][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:04:59.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:04:59.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.821][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:59.822][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:59.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.824][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.826][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:04:59.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:04:59.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.831][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:59.832][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:59.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.834][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:04:59.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:04:59.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:59.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:59.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:59.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:59.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:59.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:59.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:04:59.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:04:59.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:59.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:59.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:59.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:59.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:59.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:59.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:59.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:59.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:59.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:59.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:04:59.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:04:59.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:59.890][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2024-03-02 16:04:59.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:59.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:59.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:59.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:59.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:04:59.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:59.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:04:59.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:04:59.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:04:59.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:59.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:59.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:59.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:59.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:59.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:59.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:59.918][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2024-03-02 16:04:59.920][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:04:59.922][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2024-03-02 16:04:59.923][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:04:59.924][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:04:59.926][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:04:59.927][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:04:59.928][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:04:59.929][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:04:59.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:04:59.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:04:59.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:04:59.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:04:59.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:04:59.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:04:59.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:04:59.945][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2024-03-02 16:04:59.949][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:04:59.950][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:04:59.951][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2024-03-02 16:05:00.327][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2024-03-02 16:05:00.701][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:00.703][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2024-03-02 16:05:00.727][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2024-03-02 16:05:00.731][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2024-03-02 16:05:00.733][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:00.734][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:00.735][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:00.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:00.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:00.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:00.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:00.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:00.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:00.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:00.752][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:00.753][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:00.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.755][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:00.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:00.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.762][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:00.763][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:00.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.765][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:00.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:00.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.772][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:00.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:00.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.776][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:00.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:00.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:00.783][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:00.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.786][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:00.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:00.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:00.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:00.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.796][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:00.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:00.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.802][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:00.804][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:00.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.806][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.808][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:00.809][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:00.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.811][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.813][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:00.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:00.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.818][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:00.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:00.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.821][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:00.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:00.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.828][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:00.829][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:00.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.831][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:00.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:00.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.838][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:00.839][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:00.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.841][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.843][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:00.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:00.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.848][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:00.849][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:00.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.851][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:00.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:00.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:00.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:00.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:00.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:00.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:00.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:00.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:00.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:00.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:00.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:00.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:00.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:00.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:00.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:00.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:00.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:00.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:00.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:00.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:00.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:00.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:00.915][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2024-03-02 16:05:00.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:00.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:00.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:00.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:00.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:00.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:00.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:00.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:00.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:00.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:00.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:00.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:00.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:00.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:00.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:00.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:00.943][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2024-03-02 16:05:00.944][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:00.946][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2024-03-02 16:05:00.948][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:00.949][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:00.950][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:00.951][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:00.953][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:00.954][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:00.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:00.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:00.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:00.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:00.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:00.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:00.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:00.970][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2024-03-02 16:05:00.973][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:00.974][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:00.976][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2024-03-02 16:05:01.352][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2024-03-02 16:05:01.723][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:01.725][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2024-03-02 16:05:01.729][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2024-03-02 16:05:01.733][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2024-03-02 16:05:01.734][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:01.736][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:01.737][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:01.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:01.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:01.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:01.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:01.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:01.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:01.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:01.753][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:01.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:01.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.756][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:01.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:01.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.762][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:01.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:01.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.766][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:01.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:01.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.772][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:01.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:01.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.776][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:01.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:01.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:01.783][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:01.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.786][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:01.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:01.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:01.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:01.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.795][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:01.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:01.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.802][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:01.803][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:01.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.805][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.807][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:01.808][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:01.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.810][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.812][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:01.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:01.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:01.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:01.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.820][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:01.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:01.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.827][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:01.828][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:01.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:01.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:01.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.837][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:01.838][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:01.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.840][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.842][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:01.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:01.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.847][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:01.848][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:01.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.850][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:01.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:01.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:01.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:01.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:01.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:01.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:01.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:01.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:01.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:01.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:01.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:01.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:01.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:01.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:01.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:01.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:01.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:01.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:01.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:01.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:01.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:01.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:01.905][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2024-03-02 16:05:01.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:01.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:01.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:01.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:01.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:01.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:01.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:01.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:01.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:01.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:01.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:01.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:01.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:01.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:01.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:01.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:01.934][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2024-03-02 16:05:01.935][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:01.937][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2024-03-02 16:05:01.938][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:01.940][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:01.941][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:01.942][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:01.943][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:01.945][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:01.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:01.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:01.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:01.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:01.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:01.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:01.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:01.961][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2024-03-02 16:05:01.965][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:01.966][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:01.968][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2024-03-02 16:05:02.343][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2024-03-02 16:05:02.717][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:02.720][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2024-03-02 16:05:02.724][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2024-03-02 16:05:02.727][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2024-03-02 16:05:02.729][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:02.730][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:02.732][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:02.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:02.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:02.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:02.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:02.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:02.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:02.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:02.748][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:02.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:02.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.752][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:02.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:02.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.758][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:02.759][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:02.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.762][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.763][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:02.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:02.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.768][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:02.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:02.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.772][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:02.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:02.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.778][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:02.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:02.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.782][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:02.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:02.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:02.801][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:02.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.803][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:02.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:02.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.810][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:02.811][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:02.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.813][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.815][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:02.816][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:02.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.818][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.820][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:02.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:02.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.825][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:02.826][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:02.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.828][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:02.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:02.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.835][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:02.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:02.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.838][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:02.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:02.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.845][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:02.846][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:02.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.848][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.850][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:02.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:02.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.855][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:02.856][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:02.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.858][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:02.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:02.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:02.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:02.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:02.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:02.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:02.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:02.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:02.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:02.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:02.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:02.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:02.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:02.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:02.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:02.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:02.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:02.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:02.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:02.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:02.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:02.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:02.913][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2024-03-02 16:05:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:02.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:02.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:02.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:02.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:02.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:02.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:02.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:02.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:02.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:02.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:02.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:02.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:02.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:02.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:02.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:02.942][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2024-03-02 16:05:02.943][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:02.945][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2024-03-02 16:05:02.946][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:02.948][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:02.949][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:02.950][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:02.952][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:02.953][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:02.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:02.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:02.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:02.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:02.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:02.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:02.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:02.969][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2024-03-02 16:05:02.972][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:02.974][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:02.975][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2024-03-02 16:05:03.352][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2024-03-02 16:05:03.722][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:03.725][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2024-03-02 16:05:03.729][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2024-03-02 16:05:03.732][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2024-03-02 16:05:03.734][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:03.736][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:03.737][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:03.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:03.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:03.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:03.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:03.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:03.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:03.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:03.753][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:03.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:03.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.756][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:03.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:03.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.763][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:03.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:03.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.766][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.768][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:03.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:03.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.773][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:03.774][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:03.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.776][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:03.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:03.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.783][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:03.784][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:03.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.786][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:03.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:03.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:03.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:03.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.796][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:03.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.802][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:03.804][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:03.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.806][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.807][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:03.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:03.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.812][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:03.814][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:03.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.816][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.817][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:03.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:03.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.822][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:03.823][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:03.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.826][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:03.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:03.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.832][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:03.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:03.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.835][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:03.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:03.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.842][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:03.843][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:03.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.846][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.847][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:03.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:03.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.852][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:03.853][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:03.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.856][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:03.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:03.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:03.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:03.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:03.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:03.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:03.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:03.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:03.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:03.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:03.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:03.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:03.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:03.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:03.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:03.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:03.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:03.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:03.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:03.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:03.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:03.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:03.910][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2024-03-02 16:05:03.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:03.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:03.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:03.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:03.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:03.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:03.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:03.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:03.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:03.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:03.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:03.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:03.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:03.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:03.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:03.946][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2024-03-02 16:05:03.948][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:03.949][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2024-03-02 16:05:03.951][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:03.952][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:03.953][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:03.955][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:03.956][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:03.957][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:03.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:03.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:03.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:03.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:03.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:03.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:03.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:03.973][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2024-03-02 16:05:03.976][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:03.977][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:03.979][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2024-03-02 16:05:04.351][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2024-03-02 16:05:04.725][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:04.727][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2024-03-02 16:05:04.732][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2024-03-02 16:05:04.735][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2024-03-02 16:05:04.738][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:04.739][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:04.741][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:04.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:04.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:04.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:04.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:04.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:04.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:04.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:04.757][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:04.759][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:04.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.761][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:04.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:04.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.767][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:04.769][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:04.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.771][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:04.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:04.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.782][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:04.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:04.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.788][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:04.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:04.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.799][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:04.801][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:04.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.806][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:04.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:04.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.817][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:04.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:04.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.823][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:04.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.834][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:04.836][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:04.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.840][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.842][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:04.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:04.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.848][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.849][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:04.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.855][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:04.856][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:04.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.859][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:04.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:04.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.867][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:04.868][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:04.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.871][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:04.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:04.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.878][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:04.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:04.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.882][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:04.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:04.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.888][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:04.890][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:04.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.892][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:04.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:04.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:04.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:04.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:04.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:04.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:04.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:04.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:04.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:04.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:04.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:04.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:04.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:04.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:04.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:04.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:04.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:04.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:04.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:04.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:04.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:04.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:04.949][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2024-03-02 16:05:04.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:04.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:04.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:04.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:04.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:04.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:04.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:04.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:04.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:04.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:04.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:04.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:04.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:04.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:04.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:04.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:04.977][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2024-03-02 16:05:04.978][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:04.980][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2024-03-02 16:05:04.982][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:04.983][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:04.984][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:04.986][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:04.987][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:04.988][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:04.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:04.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:04.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:04.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:05.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:05.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:05.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:05.004][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2024-03-02 16:05:05.007][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:05.008][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:05.010][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2024-03-02 16:05:05.386][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2024-03-02 16:05:05.759][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:05.761][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2024-03-02 16:05:05.766][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2024-03-02 16:05:05.769][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2024-03-02 16:05:05.771][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:05.772][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:05.774][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:05.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:05.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:05.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:05.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:05.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:05.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:05.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:05.790][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:05.791][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:05.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.794][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:05.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:05.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.800][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:05.801][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:05.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.804][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.805][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:05.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:05.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.810][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:05.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:05.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.814][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:05.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:05.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.820][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:05.821][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:05.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.824][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:05.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:05.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.830][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:05.831][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:05.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.834][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:05.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:05.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.840][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:05.842][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:05.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.844][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.846][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:05.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:05.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.851][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:05.852][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:05.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.855][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.856][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:05.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:05.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.861][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:05.873][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:05.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.876][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:05.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:05.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.882][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:05.884][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:05.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.886][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:05.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:05.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.893][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:05.894][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:05.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.896][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.898][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:05.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:05.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.903][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:05.904][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:05.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.906][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:05.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:05.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:05.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:05.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:05.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:05.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:05.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:05.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:05.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:05.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:05.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:05.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:05.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:05.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:05.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:05.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:05.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:05.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:05.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:05.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:05.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:05.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:05.961][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2024-03-02 16:05:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:05.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:05.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:05.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:05.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:05.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:05.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:05.976][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:05.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:05.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:05.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:05.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:05.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:05.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:05.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:05.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:05.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:05.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:05.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:05.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:05.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:05.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:06.001][private$selectFields]
biodb.TRACE[2024-03-02 16:05:06.002][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:06.003][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:06.004][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:06.005][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.009][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.010][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.011][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.014][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:06.016][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:06.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.021][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.022][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:06.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.038][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-03-02 16:05:06.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:06.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:06.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:06.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:06.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:06.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:06.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:06.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:06.063][private$selectFields]
biodb.TRACE[2024-03-02 16:05:06.064][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:06.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:06.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:06.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:06.078][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:06.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.083][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.084][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:06.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.100][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-03-02 16:05:06.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:06.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:06.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:06.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:06.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:06.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:06.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:06.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:06.125][private$selectFields]
biodb.TRACE[2024-03-02 16:05:06.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:06.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:06.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:06.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.134][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.135][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.138][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.139][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:06.141][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:06.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.145][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.147][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:06.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:06.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:06.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:06.163][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-03-02 16:05:06.164][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:06.165][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:06.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:06.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:06.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:06.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:06.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:06.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:06.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:06.182][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:06.186][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:06.187][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:06.190][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:05:06.567][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:05:06.936][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:06.939][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2024-03-02 16:05:06.945][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2024-03-02 16:05:06.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:06.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:06.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:06.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:06.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:06.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:06.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:06.962][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2024-03-02 16:05:06.963][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:06.965][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2024-03-02 16:05:06.967][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:06.971][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:06.973][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:06.974][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:06.976][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:06.977][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:06.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:06.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:06.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:07.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:07.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:07.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:07.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:07.029][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2024-03-02 16:05:07.033][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:07.034][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:07.046][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2024-03-02 16:05:07.420][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2024-03-02 16:05:07.798][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:07.801][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2024-03-02 16:05:07.805][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2024-03-02 16:05:07.820][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2024-03-02 16:05:07.822][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:07.823][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:07.825][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:07.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:07.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:07.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:07.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:07.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:07.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:07.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:07.843][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:07.846][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:07.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.850][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:07.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:07.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.857][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:07.858][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:07.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.861][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.862][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:07.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:07.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.867][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:07.869][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:07.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.871][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:07.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:07.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.877][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:07.878][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:07.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.881][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:07.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:07.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.887][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:07.888][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:07.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.891][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:07.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:07.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.897][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:07.898][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:07.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.901][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.902][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:07.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:07.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.906][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.907][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:07.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:07.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.912][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:07.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:07.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.916][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:07.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:07.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.922][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:07.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:07.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.926][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:07.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:07.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.933][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:07.934][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:07.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.936][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.938][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:07.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.943][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:07.944][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:07.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:07.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:07.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:07.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:07.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:07.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:07.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:07.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:07.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:07.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:07.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:07.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:07.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:07.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:07.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:07.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:07.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:07.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:07.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:07.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:07.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:07.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:08.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:08.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:08.007][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2024-03-02 16:05:08.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:08.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:08.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:08.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:08.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:08.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:08.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:08.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:08.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:08.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:08.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:08.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:08.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:08.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:08.044][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2024-03-02 16:05:08.045][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:08.047][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2024-03-02 16:05:08.048][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:08.050][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:08.051][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:08.053][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:08.054][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:08.055][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:08.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:08.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:08.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:08.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:08.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:08.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:08.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:08.071][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2024-03-02 16:05:08.075][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:08.076][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:08.078][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2024-03-02 16:05:08.453][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2024-03-02 16:05:08.826][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:08.828][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2024-03-02 16:05:08.832][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2024-03-02 16:05:08.835][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2024-03-02 16:05:08.837][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:08.839][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:08.840][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:08.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:08.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:08.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:08.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:08.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:08.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:08.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:08.856][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:08.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:08.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.859][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:08.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:08.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.866][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:08.867][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:08.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.869][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.871][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:08.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:08.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.876][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:08.877][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:08.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.879][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:08.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:08.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.886][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:08.887][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:08.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.889][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:08.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:08.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:08.897][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:08.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.899][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:08.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:08.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.906][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:08.907][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:08.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.909][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.911][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:08.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:08.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.915][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.916][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:08.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:08.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:08.923][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:08.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.925][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:08.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:08.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.932][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:08.933][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:08.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.935][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:08.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:08.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.942][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:08.943][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:08.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:08.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:08.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.952][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:08.953][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:08.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.956][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:08.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:08.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:08.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:08.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:08.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:08.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:08.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:08.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:08.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:08.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:08.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:08.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:08.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:08.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:08.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:08.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:09.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:09.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:09.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:09.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:09.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:09.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:09.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:09.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:09.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:09.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:09.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:09.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:09.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:09.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:09.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:09.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:09.019][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2024-03-02 16:05:09.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:09.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:09.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:09.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:09.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:09.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:09.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:09.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:09.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:09.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:09.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:09.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:09.036][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:09.040][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:09.042][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:09.044][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:05:09.414][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:05:09.784][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:09.786][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2024-03-02 16:05:09.791][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2024-03-02 16:05:09.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:09.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:09.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:09.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:09.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:09.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:09.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:09.807][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2024-03-02 16:05:09.808][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:09.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2024-03-02 16:05:09.811][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:09.813][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:09.814][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:09.815][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:09.816][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:09.817][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:09.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:09.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:09.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:09.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:09.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:09.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:09.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:09.834][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2024-03-02 16:05:09.837][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:09.838][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:09.840][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2024-03-02 16:05:10.215][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2024-03-02 16:05:10.587][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:10.590][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2024-03-02 16:05:10.594][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2024-03-02 16:05:10.598][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2024-03-02 16:05:10.600][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:10.601][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:10.603][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:10.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:10.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:10.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:10.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:10.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:10.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:10.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:10.619][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:10.620][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:10.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.623][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:10.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:10.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.629][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:10.630][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:10.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.632][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.634][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:10.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:10.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.639][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:10.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:10.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.642][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:10.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:10.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:10.650][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:10.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.652][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:10.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:10.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:10.660][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:10.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.662][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:10.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:10.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.669][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:10.670][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:10.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.672][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:10.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:10.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.679][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:10.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:10.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.683][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.685][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:10.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:10.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.690][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:10.691][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:10.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.694][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:10.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:10.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.700][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:10.701][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:10.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.704][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:10.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:10.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.710][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:10.712][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:10.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.714][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:10.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:10.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.721][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:10.722][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:10.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.724][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:10.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:10.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:10.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:10.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:10.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:10.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:10.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:10.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:10.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:10.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:10.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:10.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:10.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:10.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:10.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:10.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:10.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:10.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:10.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:10.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:10.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:10.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:10.779][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2024-03-02 16:05:10.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:10.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:10.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:10.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:10.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:10.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:10.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:10.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:10.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:10.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:10.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:10.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:10.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:10.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:10.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:10.807][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2024-03-02 16:05:10.809][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:10.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2024-03-02 16:05:10.812][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:10.813][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:10.815][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:10.816][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:10.817][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:10.818][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:10.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:10.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:10.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:10.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:10.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:10.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:10.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:10.834][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2024-03-02 16:05:10.838][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:10.839][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:10.841][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2024-03-02 16:05:11.216][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2024-03-02 16:05:11.587][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:11.589][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2024-03-02 16:05:11.594][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2024-03-02 16:05:11.597][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2024-03-02 16:05:11.600][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:11.601][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:11.603][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:11.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:11.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:11.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:11.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:11.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:11.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:11.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:11.633][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:11.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:11.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.636][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:11.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:11.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.643][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:11.644][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:11.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.646][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.648][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:11.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:11.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.652][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:11.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:11.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.656][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:11.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:11.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:11.664][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:11.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.666][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:11.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:11.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:11.674][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:11.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.676][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:11.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:11.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.682][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:11.683][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:11.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.686][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:11.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:11.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.692][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:11.693][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:11.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.696][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.697][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:11.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:11.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.702][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:11.703][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:11.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.706][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:11.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:11.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.712][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:11.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:11.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.715][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:11.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.722][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:11.723][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:11.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.726][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.727][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:11.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:11.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:11.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:11.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.735][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:11.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:11.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:11.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:11.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:11.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:11.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:11.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:11.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:11.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:11.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:11.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:11.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:11.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:11.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:11.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:11.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:11.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:11.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:11.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:11.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:11.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:11.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:11.791][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2024-03-02 16:05:11.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:11.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:11.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:11.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:11.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:11.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:11.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:11.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:11.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:11.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:11.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:11.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:11.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:11.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:11.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:11.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:11.820][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2024-03-02 16:05:11.821][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:11.823][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2024-03-02 16:05:11.824][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:11.826][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:11.827][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:11.828][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:11.830][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:11.831][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:11.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:11.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:11.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:11.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:11.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:11.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:11.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:11.847][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2024-03-02 16:05:11.850][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:11.851][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:11.853][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2024-03-02 16:05:12.224][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2024-03-02 16:05:12.599][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:12.601][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2024-03-02 16:05:12.606][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2024-03-02 16:05:12.609][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2024-03-02 16:05:12.611][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:12.612][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:12.613][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:12.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:12.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:12.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:12.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:12.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:12.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:12.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:12.630][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:12.631][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:12.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.633][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:12.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:12.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.640][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:12.641][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:12.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.643][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.645][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:12.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:12.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.650][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:12.651][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:12.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.654][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:12.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:12.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.660][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:12.661][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:12.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.664][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:12.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:12.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.670][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:12.671][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:12.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.674][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:12.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:12.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.680][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:12.682][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:12.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.684][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.685][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:12.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:12.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.689][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.690][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:12.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:12.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.695][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:12.697][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:12.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.699][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:12.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:12.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.706][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:12.707][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:12.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.709][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:12.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:12.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.716][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:12.717][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:12.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.719][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.721][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:12.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:12.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.726][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:12.727][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:12.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.729][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:12.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:12.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:12.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:12.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:12.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:12.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:12.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:12.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:12.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:12.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:12.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:12.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:12.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:12.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:12.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:12.793][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2024-03-02 16:05:12.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:12.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:12.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:12.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:12.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:12.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:12.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:12.809][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:12.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:12.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:12.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:12.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:12.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:12.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:12.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:12.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.833][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:12.834][private$selectFields]
biodb.TRACE[2024-03-02 16:05:12.835][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:12.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:12.838][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:12.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.842][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.847][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.848][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:12.849][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:12.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.854][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.855][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:12.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.871][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-03-02 16:05:12.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:12.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:12.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:12.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:12.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:12.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:12.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:12.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.895][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:12.896][private$selectFields]
biodb.TRACE[2024-03-02 16:05:12.898][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:12.899][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:12.900][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:12.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.905][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.910][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:12.912][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:12.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.917][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.918][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:12.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.934][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-03-02 16:05:12.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:12.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:12.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:12.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:12.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:12.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:12.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:12.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:12.959][private$selectFields]
biodb.TRACE[2024-03-02 16:05:12.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:12.962][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:12.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:12.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.968][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.973][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:12.975][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:12.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.980][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.981][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:12.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:12.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:12.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:12.997][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-03-02 16:05:12.999][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:13.000][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:13.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:13.040][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:13.044][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:13.045][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-03-02 16:05:13.047][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:13.048][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-03-02 16:05:13.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.080][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:13.084][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:13.085][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-03-02 16:05:13.087][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:13.089][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-03-02 16:05:13.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.148][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:13.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.179][private$selectFields]
biodb.TRACE[2024-03-02 16:05:13.180][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:13.181][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:13.183][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.184][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.187][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.192][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.194][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.199][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.200][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:13.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-03-02 16:05:13.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.241][private$selectFields]
biodb.TRACE[2024-03-02 16:05:13.242][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:13.243][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:13.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.249][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.254][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.255][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.256][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.261][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.262][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:13.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.278][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:05:13.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.303][private$selectFields]
biodb.TRACE[2024-03-02 16:05:13.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:13.305][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:13.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.311][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.316][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.318][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.323][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:13.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-03-02 16:05:13.342][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:13.343][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:13.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:13.360][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:13.364][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:13.365][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-03-02 16:05:13.367][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:13.369][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-03-02 16:05:13.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.426][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:13.430][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:13.432][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-03-02 16:05:13.434][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:13.435][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-03-02 16:05:13.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.522][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:13.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.548][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.549][private$selectFields]
biodb.TRACE[2024-03-02 16:05:13.550][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:13.551][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:13.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.557][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.568][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.571][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.576][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.577][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:13.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:05:13.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.618][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.619][private$selectFields]
biodb.TRACE[2024-03-02 16:05:13.620][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:13.622][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:13.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.628][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.633][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.635][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.640][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.642][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:13.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.658][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-03-02 16:05:13.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.683][private$selectFields]
biodb.TRACE[2024-03-02 16:05:13.684][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:13.685][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:13.687][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.688][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.691][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.696][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.698][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.699][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:13.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.704][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.705][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:13.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:13.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.721][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-03-02 16:05:13.723][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:13.724][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:13.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:13.741][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:13.746][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:13.747][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-03-02 16:05:13.749][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:13.751][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-03-02 16:05:13.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:13.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:13.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:13.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:13.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:13.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:13.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:13.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:13.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:13.988][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:13.992][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:13.993][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-03-02 16:05:13.995][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:13.996][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-03-02 16:05:13.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:14.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:14.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:14.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:14.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:14.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:14.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:14.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:14.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:14.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:14.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:14.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:14.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:14.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:14.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:14.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:14.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:14.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:14.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:14.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:14.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:14.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:14.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:14.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:14.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:14.083][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:14.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:14.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:14.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:14.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:14.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:14.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:14.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:14.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.109][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:14.110][private$selectFields]
biodb.TRACE[2024-03-02 16:05:14.111][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:14.112][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:14.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:14.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.118][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.123][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:14.125][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:14.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.128][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.130][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.132][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.148][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-03-02 16:05:14.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:14.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:14.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:14.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:14.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:14.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:14.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:14.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:14.173][private$selectFields]
biodb.TRACE[2024-03-02 16:05:14.174][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:14.175][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:14.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:14.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.181][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.186][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:14.188][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:14.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.193][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.194][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:14.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.210][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-03-02 16:05:14.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:14.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:14.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:14.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:14.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:14.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:14.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:14.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:14.234][private$selectFields]
biodb.TRACE[2024-03-02 16:05:14.235][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:14.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:14.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:14.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.242][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.247][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:14.249][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:14.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.254][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.255][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:14.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:14.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:14.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:14.271][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-03-02 16:05:14.272][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:14.273][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:14.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:14.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:14.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:14.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:14.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:14.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:14.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:14.312][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:14.317][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:14.318][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:14.320][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:05:14.694][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:05:15.064][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:15.067][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2024-03-02 16:05:15.072][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2024-03-02 16:05:15.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:15.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:15.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:15.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:15.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:15.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:15.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:15.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:15.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:15.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:15.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:15.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:15.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:15.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:15.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:15.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:15.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:15.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:15.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:15.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:15.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:15.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:15.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:15.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:15.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:15.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:15.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:15.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:15.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:15.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:15.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:15.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:15.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:15.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:15.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:15.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:15.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:15.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:15.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:15.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:15.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:15.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:15.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:15.153][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2024-03-02 16:05:15.154][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:15.156][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2024-03-02 16:05:15.157][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:15.159][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:15.160][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:15.161][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:15.163][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:15.164][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:15.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:15.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:15.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:15.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:15.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:15.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:15.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:15.180][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2024-03-02 16:05:15.183][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:15.184][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:15.186][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2024-03-02 16:05:15.558][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2024-03-02 16:05:15.930][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:15.933][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2024-03-02 16:05:15.938][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2024-03-02 16:05:15.941][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2024-03-02 16:05:15.943][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:15.945][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:15.946][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:15.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:15.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:15.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:15.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:15.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:15.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:15.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:15.963][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:15.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:15.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:15.967][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:15.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:15.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:15.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:15.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:15.974][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:15.975][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:15.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:15.977][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:15.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:15.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:15.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:15.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:15.984][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:15.985][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:15.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:15.987][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:15.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:15.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:15.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:15.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:15.994][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:15.995][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:15.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:15.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:15.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:16.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:16.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:16.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:16.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.008][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:16.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:16.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.014][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:16.016][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:16.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.018][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:16.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:16.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.025][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:16.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.030][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:16.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.035][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:16.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:16.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.038][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:16.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:16.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.045][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:16.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:16.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:16.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:16.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.056][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:16.057][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:16.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.060][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.061][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:16.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:16.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.067][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:16.068][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:16.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.070][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:16.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:16.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:16.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:16.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:16.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:16.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:16.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:16.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:16.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:16.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:16.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:16.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:16.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:16.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:16.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:16.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:16.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:16.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:16.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:16.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:16.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:16.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:16.127][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2024-03-02 16:05:16.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:16.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:16.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:16.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:16.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:16.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:16.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:16.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:16.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:16.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:16.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:16.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:16.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:16.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:16.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:16.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:16.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:16.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:16.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:16.185][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2024-03-02 16:05:16.187][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:16.189][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2024-03-02 16:05:16.190][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:16.192][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:16.193][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:16.194][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:16.195][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:16.196][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:16.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:16.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:16.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:16.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:16.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:16.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:16.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:16.213][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2024-03-02 16:05:16.217][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:16.218][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:16.220][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2024-03-02 16:05:16.594][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2024-03-02 16:05:16.968][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:16.971][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2024-03-02 16:05:16.976][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2024-03-02 16:05:16.980][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2024-03-02 16:05:16.982][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:16.984][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:16.985][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:16.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:16.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:16.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:16.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:16.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:16.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:16.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:17.002][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:17.003][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:17.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.006][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:17.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:17.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.012][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:17.013][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:17.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.016][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.017][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:17.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:17.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.034][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:17.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:17.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.037][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:17.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:17.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.044][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:17.045][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:17.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.047][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:17.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:17.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.054][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:17.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:17.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.057][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:17.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:17.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.064][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:17.065][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:17.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.069][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:17.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:17.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.073][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.074][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:17.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:17.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.079][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:17.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:17.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.083][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:17.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:17.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.089][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:17.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:17.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:17.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:17.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.099][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:17.101][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:17.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.103][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:17.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.109][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:17.111][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:17.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.113][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:17.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:17.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:17.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:17.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:17.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:17.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:17.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:17.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:17.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:17.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:17.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:17.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:17.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:17.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:17.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:17.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:17.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:17.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:17.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:17.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:17.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:17.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:17.168][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2024-03-02 16:05:17.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:17.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:17.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:17.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:17.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:17.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:17.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:17.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:17.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:17.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:17.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:17.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:17.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:17.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:17.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:17.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:17.197][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2024-03-02 16:05:17.199][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:17.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2024-03-02 16:05:17.202][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:17.203][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:17.205][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:17.206][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:17.207][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:17.209][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:17.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:17.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:17.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:17.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:17.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:17.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:17.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:17.225][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2024-03-02 16:05:17.229][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:17.230][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:17.232][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2024-03-02 16:05:17.601][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2024-03-02 16:05:17.976][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:17.979][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2024-03-02 16:05:17.983][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2024-03-02 16:05:17.986][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2024-03-02 16:05:17.988][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:17.989][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:17.991][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:17.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:17.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:17.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:18.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:18.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:18.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:18.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:18.007][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:18.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:18.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.011][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:18.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:18.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.017][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:18.018][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:18.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.021][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.022][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:18.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:18.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.027][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:18.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:18.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:18.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:18.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.037][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:18.038][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:18.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.041][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:18.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:18.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.046][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.047][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:18.048][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:18.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.051][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.052][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:18.053][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:18.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.056][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.057][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:18.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:18.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:18.063][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:18.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.066][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:18.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:18.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.072][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:18.073][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:18.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:18.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:18.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.082][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:18.084][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:18.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.086][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.087][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:18.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:18.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.092][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:18.094][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:18.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:18.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:18.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:18.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:18.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:18.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:18.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:18.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:18.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:18.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:18.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:18.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:18.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:18.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:18.151][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2024-03-02 16:05:18.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:18.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:18.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:18.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:18.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:18.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:18.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:18.176][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:18.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:18.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:18.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:18.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:18.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:18.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:18.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:18.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:18.202][private$selectFields]
biodb.TRACE[2024-03-02 16:05:18.203][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:18.204][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:18.205][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:18.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.210][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.214][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:18.217][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:18.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.221][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.223][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:18.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.238][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:05:18.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:18.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:18.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:18.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:18.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:18.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:18.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:18.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.261][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:18.262][private$selectFields]
biodb.TRACE[2024-03-02 16:05:18.263][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:18.265][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:18.266][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:18.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.270][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.275][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:18.277][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:18.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.282][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.283][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:18.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.299][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-03-02 16:05:18.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:18.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:18.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:18.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:18.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:18.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:18.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:18.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.322][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:18.324][private$selectFields]
biodb.TRACE[2024-03-02 16:05:18.325][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:18.326][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:18.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:18.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.332][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.336][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:18.339][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:18.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.343][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.345][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:18.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:18.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:18.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:18.360][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-03-02 16:05:18.361][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:18.363][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:18.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:18.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:18.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:18.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:18.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:18.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:18.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:18.379][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:18.383][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:18.385][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:18.387][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:05:18.768][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:05:19.233][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:19.236][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2024-03-02 16:05:19.242][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2024-03-02 16:05:19.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:19.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:19.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:19.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:19.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:19.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:19.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:19.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:19.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:19.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:19.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:19.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:19.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:19.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:19.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:19.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:19.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:19.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:19.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:19.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:19.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:19.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:19.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:19.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:19.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:19.330][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:19.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:19.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:19.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:19.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:19.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:19.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:19.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:19.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:19.356][private$selectFields]
biodb.TRACE[2024-03-02 16:05:19.357][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:19.358][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:19.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:19.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.364][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.369][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.370][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:19.371][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:19.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.376][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.377][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:19.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.393][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:05:19.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:19.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:19.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:19.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:19.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:19.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:19.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:19.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:19.428][private$selectFields]
biodb.TRACE[2024-03-02 16:05:19.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:19.430][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:19.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:19.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.436][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.441][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:19.443][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:19.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.448][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.449][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:19.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.466][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-03-02 16:05:19.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:19.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:19.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:19.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:19.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:19.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:19.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:19.491][private$selectFields]
biodb.TRACE[2024-03-02 16:05:19.492][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:19.493][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:19.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:19.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.499][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.504][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:19.506][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:19.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.511][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.512][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:19.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:19.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:19.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:19.528][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-03-02 16:05:19.530][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:19.531][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:19.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:19.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:19.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:19.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:19.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:19.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:19.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:19.549][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:19.553][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:19.555][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:19.557][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:05:19.947][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:05:20.324][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:20.327][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2024-03-02 16:05:20.332][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2024-03-02 16:05:20.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:20.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:20.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:20.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:20.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:20.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:20.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:20.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:20.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:20.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:20.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:20.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:20.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:20.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:20.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:20.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:20.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:20.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:20.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:20.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:20.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:20.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:20.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:20.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:20.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:20.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:20.376][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2024-03-02 16:05:20.377][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:20.379][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2024-03-02 16:05:20.381][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:20.382][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:20.383][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:20.384][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:20.386][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:20.387][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:20.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:20.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:20.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:20.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:20.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:20.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:20.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:20.403][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2024-03-02 16:05:20.406][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:20.407][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:20.409][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2024-03-02 16:05:20.785][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2024-03-02 16:05:21.157][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:21.160][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2024-03-02 16:05:21.164][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2024-03-02 16:05:21.167][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2024-03-02 16:05:21.169][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:21.170][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:21.172][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:21.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:21.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:21.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:21.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:21.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:21.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:21.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:21.188][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:21.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:21.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.191][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:21.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:21.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.198][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:21.199][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:21.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.203][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:21.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:21.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.208][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:21.209][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:21.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.211][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.213][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:21.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:21.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.217][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:21.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:21.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.221][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:21.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:21.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:21.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:21.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:21.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:21.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.237][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:21.238][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:21.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.241][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.242][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:21.243][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:21.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.246][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.247][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:21.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:21.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:21.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:21.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.256][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:21.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:21.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.262][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:21.263][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:21.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.265][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:21.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:21.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.272][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:21.273][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:21.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.275][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.277][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:21.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:21.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.282][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:21.283][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:21.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.285][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:21.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:21.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:21.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:21.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:21.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:21.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:21.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:21.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:21.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:21.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:21.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:21.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:21.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:21.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:21.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:21.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:21.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:21.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:21.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:21.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:21.350][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2024-03-02 16:05:21.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:21.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:21.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:21.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:21.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:21.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:21.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:21.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:21.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:21.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:21.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:21.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:21.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:21.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:21.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:21.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:21.379][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2024-03-02 16:05:21.381][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:21.383][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2024-03-02 16:05:21.384][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:21.385][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:21.387][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:21.388][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:21.389][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:21.390][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:21.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:21.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:21.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:21.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:21.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:21.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:21.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:21.406][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2024-03-02 16:05:21.410][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:21.411][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:21.413][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2024-03-02 16:05:21.787][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2024-03-02 16:05:22.162][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:22.164][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2024-03-02 16:05:22.169][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2024-03-02 16:05:22.172][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2024-03-02 16:05:22.174][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:22.175][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:22.177][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:22.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:22.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:22.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:22.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:22.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:22.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:22.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:22.193][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:22.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:22.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.196][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:22.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:22.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.203][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:22.204][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:22.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.206][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.208][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:22.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:22.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.213][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:22.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:22.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.217][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:22.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:22.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.223][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:22.225][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:22.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.227][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:22.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:22.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.233][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:22.235][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:22.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.237][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:22.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:22.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.244][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:22.245][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:22.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.247][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.249][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:22.250][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:22.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.252][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.254][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:22.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:22.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.259][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:22.260][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:22.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.262][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:22.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:22.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.269][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:22.270][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:22.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.273][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:22.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:22.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.279][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:22.281][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:22.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.283][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.285][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:22.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:22.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.290][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:22.291][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:22.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.293][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:22.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:22.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:22.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:22.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:22.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:22.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:22.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:22.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:22.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:22.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:22.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:22.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:22.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:22.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:22.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:22.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:22.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:22.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:22.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:22.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:22.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:22.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:22.349][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2024-03-02 16:05:22.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:22.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:22.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:22.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:22.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:22.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:22.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:22.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:22.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:22.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:22.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:22.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:22.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:22.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:22.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:22.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:22.378][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2024-03-02 16:05:22.380][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:22.382][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2024-03-02 16:05:22.383][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:22.384][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:22.386][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:22.387][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:22.388][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:22.389][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:22.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:22.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:22.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:22.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:22.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:22.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:22.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:22.406][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2024-03-02 16:05:22.410][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:22.411][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:22.413][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2024-03-02 16:05:22.788][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2024-03-02 16:05:23.159][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:23.162][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2024-03-02 16:05:23.166][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2024-03-02 16:05:23.169][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2024-03-02 16:05:23.171][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:23.173][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:23.174][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:23.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:23.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:23.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:23.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:23.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:23.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:23.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:23.191][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:23.193][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:23.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.195][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:23.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:23.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.201][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:23.202][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:23.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.216][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.218][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:23.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:23.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.223][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:23.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:23.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.226][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:23.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:23.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.233][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:23.234][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:23.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.236][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:23.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:23.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.243][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:23.244][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:23.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.246][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:23.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:23.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.253][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:23.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:23.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.256][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.258][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:23.259][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.261][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.263][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:23.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:23.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:23.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.271][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:23.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:23.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.278][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:23.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:23.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.281][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:23.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:23.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.288][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:23.289][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:23.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.291][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.293][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:23.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:23.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.298][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:23.299][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:23.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.301][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:23.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:23.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:23.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:23.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:23.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:23.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:23.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:23.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:23.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:23.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:23.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:23.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:23.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:23.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:23.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:23.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:23.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:23.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:23.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:23.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:23.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:23.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:23.357][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2024-03-02 16:05:23.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:23.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:23.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:23.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:23.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:23.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:23.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:23.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:23.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:23.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:23.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:23.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:23.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:23.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:23.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:23.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:23.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:23.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:23.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:23.414][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2024-03-02 16:05:23.415][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:23.417][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2024-03-02 16:05:23.419][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:23.420][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:23.421][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:23.423][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:23.424][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:23.425][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:23.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:23.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:23.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:23.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:23.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:23.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:23.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:23.441][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2024-03-02 16:05:23.445][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:23.446][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:23.448][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2024-03-02 16:05:23.823][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2024-03-02 16:05:24.197][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:24.200][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2024-03-02 16:05:24.204][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2024-03-02 16:05:24.207][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2024-03-02 16:05:24.209][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:24.210][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:24.211][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:24.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:24.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:24.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:24.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:24.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:24.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:24.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:24.227][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:24.229][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:24.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:24.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:24.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.237][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:24.239][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:24.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.241][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.242][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:24.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:24.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.247][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:24.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:24.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.251][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:24.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:24.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:24.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:24.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.261][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:24.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:24.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.267][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:24.268][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:24.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.271][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:24.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:24.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.277][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:24.278][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:24.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.281][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:24.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.287][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:24.288][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:24.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.291][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.292][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:24.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:24.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.297][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:24.298][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:24.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.301][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:24.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:24.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.307][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:24.308][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:24.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.311][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:24.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:24.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.317][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:24.318][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:24.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.321][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.322][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:24.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:24.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:24.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:24.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.331][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:24.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:24.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:24.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:24.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:24.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:24.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:24.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:24.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:24.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:24.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:24.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:24.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:24.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:24.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:24.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:24.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:24.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:24.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:24.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:24.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:24.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:24.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:24.394][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2024-03-02 16:05:24.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:24.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:24.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:24.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:24.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:24.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:24.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:24.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:24.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:24.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:24.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:24.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:24.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:24.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:24.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:24.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:24.422][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2024-03-02 16:05:24.424][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:24.426][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2024-03-02 16:05:24.427][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:24.429][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:24.430][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:24.431][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:24.432][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:24.433][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:24.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:24.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:24.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:24.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:24.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:24.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:24.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:24.449][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2024-03-02 16:05:24.452][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:24.454][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:24.455][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2024-03-02 16:05:24.827][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2024-03-02 16:05:25.197][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:25.199][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2024-03-02 16:05:25.203][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2024-03-02 16:05:25.206][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2024-03-02 16:05:25.208][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:25.210][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:25.211][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:25.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:25.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:25.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:25.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:25.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:25.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:25.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:25.227][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:25.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:25.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:25.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:25.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.237][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:25.238][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:25.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.241][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.242][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:25.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:25.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.247][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:25.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:25.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.251][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:25.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:25.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:25.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:25.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.261][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:25.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:25.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.267][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:25.268][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:25.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.271][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:25.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:25.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.277][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:25.278][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:25.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.281][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.282][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:25.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.287][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:25.288][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:25.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.291][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.292][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:25.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.298][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:25.299][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:25.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.301][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:25.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:25.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.308][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:25.309][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:25.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.311][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:25.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:25.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.318][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:25.319][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:25.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.322][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:25.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:25.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.328][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:25.329][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:25.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.332][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:25.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:25.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:25.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:25.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:25.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:25.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:25.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:25.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:25.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:25.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:25.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:25.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:25.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:25.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:25.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:25.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:25.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:25.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:25.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:25.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:25.387][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2024-03-02 16:05:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:25.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:25.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:25.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:25.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:25.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:25.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:25.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:25.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:25.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:25.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:25.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:25.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:25.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:25.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:25.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:25.416][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2024-03-02 16:05:25.417][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:25.419][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2024-03-02 16:05:25.420][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:25.422][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:25.423][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:25.424][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:25.426][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:25.427][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:25.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:25.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:25.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:25.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:25.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:25.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:25.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:25.443][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2024-03-02 16:05:25.447][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:25.448][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:25.450][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2024-03-02 16:05:25.828][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2024-03-02 16:05:26.204][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:26.206][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2024-03-02 16:05:26.211][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2024-03-02 16:05:26.214][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2024-03-02 16:05:26.216][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:26.217][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:26.219][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:26.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:26.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:26.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:26.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:26.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:26.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:26.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:26.235][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:26.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:26.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.250][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:26.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:26.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.257][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:26.258][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:26.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.260][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:26.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:26.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.267][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:26.268][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:26.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.270][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:26.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:26.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.277][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:26.278][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:26.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.280][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:26.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:26.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.287][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:26.288][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:26.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.290][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:26.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:26.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.297][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:26.298][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:26.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.300][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.302][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:26.303][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:26.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.305][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.307][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:26.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:26.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.312][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:26.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:26.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.315][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:26.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:26.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.322][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:26.323][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:26.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.325][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:26.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:26.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.332][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:26.333][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:26.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.335][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.337][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:26.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.342][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:26.343][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:26.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.345][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:26.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:26.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:26.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:26.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:26.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:26.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:26.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:26.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:26.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:26.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:26.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:26.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:26.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:26.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:26.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:26.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:26.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:26.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:26.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:26.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:26.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:26.401][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2024-03-02 16:05:26.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:26.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:26.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:26.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:26.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:26.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:26.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:26.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:26.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:26.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:26.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:26.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:26.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:26.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:26.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:26.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:26.430][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2024-03-02 16:05:26.431][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:26.433][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2024-03-02 16:05:26.435][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:26.436][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:26.437][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:26.439][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:26.440][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:26.441][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:26.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:26.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:26.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:26.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:26.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:26.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:26.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:26.457][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2024-03-02 16:05:26.461][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:26.462][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:26.464][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2024-03-02 16:05:26.934][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2024-03-02 16:05:27.309][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:27.311][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2024-03-02 16:05:27.316][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2024-03-02 16:05:27.319][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2024-03-02 16:05:27.321][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:27.322][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:27.324][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:27.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:27.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:27.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:27.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:27.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:27.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:27.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:27.340][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:27.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:27.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.343][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:27.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:27.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.350][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:27.351][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:27.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.353][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.355][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:27.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:27.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.360][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:27.361][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:27.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.363][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:27.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.370][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:27.371][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:27.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.373][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:27.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:27.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.380][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:27.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:27.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.383][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:27.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:27.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.390][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:27.391][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:27.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.393][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.395][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:27.396][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:27.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.398][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.400][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:27.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:27.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:27.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:27.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.408][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:27.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:27.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.415][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:27.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:27.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.418][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.420][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:27.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:27.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.425][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:27.426][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:27.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.428][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.430][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:27.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:27.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.435][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:27.436][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:27.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.438][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:27.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:27.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:27.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:27.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:27.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:27.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:27.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:27.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:27.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:27.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:27.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:27.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:27.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:27.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:27.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:27.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:27.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:27.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:27.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:27.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:27.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:27.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:27.506][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2024-03-02 16:05:27.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:27.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:27.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:27.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:27.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:27.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:27.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:27.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:27.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:27.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:27.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:27.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:27.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:27.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:27.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:27.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:27.534][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2024-03-02 16:05:27.535][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:27.537][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2024-03-02 16:05:27.538][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:27.539][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:27.541][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:27.542][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:27.543][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:27.544][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:27.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:27.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:27.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:27.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:27.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:27.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:27.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:27.560][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2024-03-02 16:05:27.563][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:27.564][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:27.566][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2024-03-02 16:05:27.937][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2024-03-02 16:05:28.306][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:28.308][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2024-03-02 16:05:28.312][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2024-03-02 16:05:28.315][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2024-03-02 16:05:28.318][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:28.319][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:28.321][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:28.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:28.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:28.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:28.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:28.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:28.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:28.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:28.337][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:28.338][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:28.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.340][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:28.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:28.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.346][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:28.348][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:28.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.350][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.351][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:28.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:28.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.356][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:28.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:28.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.360][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:28.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:28.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.366][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:28.367][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:28.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.370][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:28.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:28.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:28.377][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:28.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.380][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:28.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:28.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.386][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:28.387][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:28.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.389][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.391][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:28.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:28.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.394][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.396][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:28.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:28.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.401][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:28.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:28.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.404][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:28.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:28.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.411][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:28.412][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:28.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.414][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:28.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:28.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.421][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:28.422][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:28.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.425][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.426][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:28.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:28.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.431][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:28.433][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:28.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.435][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:28.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:28.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:28.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:28.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:28.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:28.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:28.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:28.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:28.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:28.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:28.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:28.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:28.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:28.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:28.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:28.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:28.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:28.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:28.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:28.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:28.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:28.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:28.490][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2024-03-02 16:05:28.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:28.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:28.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:28.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:28.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:28.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:28.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:28.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:28.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:28.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:28.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:28.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:28.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:28.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:28.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:28.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:28.520][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2024-03-02 16:05:28.521][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:28.523][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2024-03-02 16:05:28.524][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:28.525][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:28.527][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:28.528][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:28.529][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:28.530][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:28.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:28.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:28.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:28.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:28.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:28.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:28.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:28.546][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2024-03-02 16:05:28.549][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:28.550][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:28.552][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2024-03-02 16:05:29.138][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2024-03-02 16:05:29.511][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:29.513][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2024-03-02 16:05:29.518][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2024-03-02 16:05:29.521][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2024-03-02 16:05:29.523][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:29.525][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:29.526][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:29.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:29.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:29.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:29.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:29.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:29.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:29.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:29.543][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:29.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:29.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.547][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:29.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:29.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.553][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:29.555][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:29.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.557][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.559][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:29.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.564][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:29.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:29.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.568][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:29.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:29.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.574][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:29.588][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:29.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.591][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:29.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:29.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.598][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:29.600][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:29.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.603][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:29.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:29.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.610][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:29.611][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:29.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.614][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.615][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:29.617][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:29.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.619][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.620][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:29.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:29.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.625][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:29.627][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:29.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.629][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:29.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:29.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.635][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:29.636][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:29.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.639][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:29.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.645][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:29.646][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:29.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.649][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.650][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:29.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.655][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:29.656][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:29.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.658][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:29.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:29.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:29.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:29.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:29.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:29.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:29.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:29.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:29.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:29.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:29.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:29.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:29.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:29.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:29.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:29.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:29.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:29.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:29.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:29.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:29.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:29.712][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2024-03-02 16:05:29.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:29.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:29.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:29.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:29.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:29.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:29.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:29.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:29.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:29.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:29.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:29.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:29.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:29.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:29.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:29.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:29.741][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2024-03-02 16:05:29.742][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:29.744][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2024-03-02 16:05:29.745][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:29.746][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:29.748][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:29.749][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:29.750][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:29.751][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:29.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:29.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:29.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:29.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:29.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:29.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:29.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:29.767][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2024-03-02 16:05:29.771][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:29.772][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:29.773][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2024-03-02 16:05:30.144][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2024-03-02 16:05:30.514][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:30.517][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2024-03-02 16:05:30.521][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2024-03-02 16:05:30.524][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2024-03-02 16:05:30.526][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:30.528][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:30.529][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:30.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:30.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:30.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:30.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:30.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:30.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:30.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:30.545][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:30.546][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:30.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.549][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:30.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:30.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.555][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:30.557][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:30.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.559][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.560][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:30.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:30.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.566][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:30.567][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:30.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.569][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:30.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:30.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.576][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:30.577][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:30.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.579][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:30.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:30.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:30.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:30.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.589][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:30.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.596][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:30.597][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:30.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.600][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.601][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:30.602][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:30.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.605][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.606][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:30.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.611][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:30.612][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:30.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.615][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:30.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.621][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:30.622][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:30.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.624][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:30.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:30.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.631][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:30.632][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:30.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.634][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:30.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:30.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.641][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:30.642][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:30.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.644][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:30.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:30.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:30.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:30.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:30.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:30.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:30.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:30.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:30.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:30.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:30.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:30.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:30.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:30.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:30.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:30.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:30.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:30.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:30.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:30.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:30.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:30.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:30.699][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2024-03-02 16:05:30.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:30.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:30.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:30.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:30.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:30.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:30.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:30.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:30.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:30.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:30.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:30.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:30.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:30.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:30.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:30.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:30.736][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2024-03-02 16:05:30.737][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:30.739][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2024-03-02 16:05:30.741][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:30.742][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:30.743][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:30.745][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:30.746][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:30.747][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:30.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:30.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:30.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:30.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:30.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:30.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:30.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:30.763][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2024-03-02 16:05:30.766][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:30.767][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:30.769][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2024-03-02 16:05:31.141][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2024-03-02 16:05:31.513][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:31.515][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2024-03-02 16:05:31.520][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2024-03-02 16:05:31.523][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2024-03-02 16:05:31.525][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:31.526][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:31.528][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:31.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:31.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:31.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:31.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:31.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:31.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:31.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:31.544][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:31.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:31.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.547][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:31.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:31.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.554][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:31.555][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:31.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.557][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.559][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:31.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:31.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.564][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:31.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:31.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.567][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:31.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:31.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.574][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:31.575][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:31.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.578][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:31.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:31.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:31.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:31.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.588][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:31.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:31.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:31.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:31.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.598][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.599][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:31.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.603][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.604][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:31.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:31.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:31.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.613][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:31.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:31.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.619][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:31.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:31.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.623][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:31.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:31.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.630][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:31.631][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:31.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.633][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:31.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:31.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:31.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:31.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.644][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:31.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:31.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:31.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:31.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:31.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:31.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:31.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:31.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:31.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:31.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:31.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:31.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:31.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:31.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:31.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:31.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:31.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:31.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:31.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:31.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:31.699][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2024-03-02 16:05:31.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:31.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:31.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:31.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:31.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:31.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:31.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:31.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:31.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:31.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:31.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:31.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:31.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:31.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:31.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:31.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:31.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:31.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:31.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:31.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:31.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:31.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:31.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:31.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:31.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:31.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:31.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:31.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:31.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:31.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:31.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:31.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:31.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:31.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:31.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:31.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:31.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:31.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:31.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:31.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:31.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:31.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:31.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:31.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:31.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:31.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:31.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:31.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:31.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:31.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:31.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:31.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:31.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:31.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:31.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:31.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:31.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:31.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:31.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:31.904][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2024-03-02 16:05:31.905][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:31.907][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2024-03-02 16:05:31.909][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:31.910][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:31.911][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:31.913][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:31.914][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:31.915][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:31.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:31.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:31.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:31.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:31.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:31.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:31.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:31.931][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2024-03-02 16:05:31.934][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:31.936][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:31.937][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2024-03-02 16:05:32.310][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2024-03-02 16:05:32.680][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:32.683][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2024-03-02 16:05:32.687][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2024-03-02 16:05:32.691][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2024-03-02 16:05:32.692][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:32.694][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:32.695][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:32.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:32.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:32.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:32.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:32.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:32.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:32.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:32.711][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:32.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:32.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.715][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:32.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.721][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:32.722][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:32.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.725][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.726][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:32.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:32.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.731][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:32.733][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:32.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.735][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:32.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:32.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:32.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:32.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.745][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:32.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:32.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:32.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:32.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.755][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:32.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:32.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.761][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:32.763][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:32.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.765][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.766][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:32.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.770][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.772][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:32.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.776][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:32.778][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:32.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.780][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:32.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:32.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.786][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:32.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:32.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.790][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:32.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:32.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.797][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:32.798][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:32.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.800][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.802][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:32.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:32.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.807][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:32.808][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:32.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.810][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:32.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:32.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:32.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:32.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:32.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:32.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:32.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:32.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:32.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:32.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:32.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:32.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:32.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:32.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:32.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:32.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:32.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:32.864][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2024-03-02 16:05:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:32.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:32.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:32.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:32.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:32.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:32.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:32.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:32.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:32.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:32.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:32.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:32.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:32.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:32.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:32.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:32.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:32.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:32.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:32.920][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2024-03-02 16:05:32.922][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:32.924][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2024-03-02 16:05:32.925][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:32.927][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:32.928][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:32.929][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:32.931][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:32.932][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:32.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:32.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:32.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:32.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:32.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:32.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:32.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:32.948][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2024-03-02 16:05:32.952][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:32.953][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:32.955][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2024-03-02 16:05:33.331][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2024-03-02 16:05:33.700][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:33.703][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2024-03-02 16:05:33.707][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2024-03-02 16:05:33.710][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2024-03-02 16:05:33.712][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:33.713][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:33.714][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:33.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:33.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:33.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:33.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:33.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:33.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:33.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:33.730][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:33.732][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:33.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.734][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:33.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:33.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.740][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:33.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:33.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.755][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.757][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:33.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:33.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.762][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:33.763][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:33.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.766][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:33.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:33.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.772][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:33.773][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:33.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.776][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:33.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:33.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:33.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:33.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.786][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:33.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:33.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.792][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:33.793][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:33.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.795][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.797][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:33.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:33.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.800][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:33.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:33.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.807][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:33.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:33.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.810][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:33.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:33.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.817][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:33.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:33.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.820][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:33.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:33.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.827][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:33.828][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:33.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:33.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:33.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.836][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:33.837][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:33.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.840][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:33.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:33.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:33.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:33.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:33.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:33.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:33.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:33.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:33.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:33.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:33.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:33.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:33.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:33.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:33.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:33.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:33.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:33.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:33.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:33.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:33.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:33.894][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2024-03-02 16:05:33.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:33.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:33.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:33.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:33.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:33.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:33.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:33.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:33.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:33.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:33.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:33.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:33.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:33.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:33.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:33.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:33.923][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2024-03-02 16:05:33.924][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:33.926][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2024-03-02 16:05:33.928][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:33.929][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:33.930][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:33.932][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:33.933][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:33.934][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:33.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:33.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:33.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:33.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:33.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:33.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:33.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:33.951][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2024-03-02 16:05:33.955][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:33.956][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:33.958][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2024-03-02 16:05:34.333][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2024-03-02 16:05:34.708][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:34.710][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2024-03-02 16:05:34.714][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2024-03-02 16:05:34.717][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2024-03-02 16:05:34.719][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:34.721][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:34.722][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:34.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:34.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:34.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:34.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:34.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:34.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:34.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:34.738][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:34.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:34.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.742][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:34.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:34.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.748][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:34.749][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:34.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.751][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.753][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:34.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:34.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.758][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:34.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:34.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.761][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:34.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:34.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.768][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:34.769][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:34.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.772][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:34.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:34.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.778][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:34.779][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:34.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.782][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:34.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:34.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.788][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:34.789][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:34.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.792][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.793][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:34.794][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:34.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.797][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:34.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:34.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:34.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:34.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.807][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:34.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:34.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.813][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:34.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:34.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.817][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.823][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:34.825][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:34.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.827][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.828][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:34.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:34.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.833][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:34.835][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:34.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.837][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:34.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:34.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:34.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:34.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:34.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:34.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:34.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:34.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:34.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:34.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:34.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:34.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:34.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:34.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:34.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:34.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:34.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:34.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:34.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:34.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:34.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:34.901][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2024-03-02 16:05:34.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:34.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:34.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:34.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:34.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:34.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:34.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:34.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:34.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:34.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:34.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:34.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:34.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:34.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:34.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:34.929][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2024-03-02 16:05:34.930][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:34.932][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2024-03-02 16:05:34.934][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:34.935][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:34.936][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:34.938][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:34.939][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:34.940][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:34.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:34.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:34.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:34.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:34.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:34.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:34.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:34.956][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2024-03-02 16:05:34.959][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:34.960][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:34.962][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2024-03-02 16:05:35.331][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2024-03-02 16:05:35.705][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:35.708][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2024-03-02 16:05:35.712][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2024-03-02 16:05:35.716][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2024-03-02 16:05:35.718][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:35.719][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:35.721][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:35.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:35.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:35.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:35.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:35.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:35.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:35.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:35.739][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:35.740][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:35.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.743][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:35.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:35.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.750][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:35.751][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:35.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.753][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.755][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:35.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:35.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.760][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:35.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:35.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.764][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:35.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:35.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.771][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:35.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:35.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.775][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:35.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:35.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:35.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:35.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.785][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:35.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:35.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.791][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:35.792][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:35.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.795][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.796][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:35.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:35.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.800][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.801][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:35.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:35.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.806][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:35.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:35.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.810][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:35.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:35.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.816][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:35.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:35.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.820][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:35.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:35.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.827][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:35.828][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:35.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:35.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:35.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.837][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:35.838][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:35.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.840][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:35.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:35.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:35.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:35.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:35.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:35.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:35.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:35.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:35.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:35.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:35.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:35.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:35.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:35.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:35.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:35.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:35.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:35.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:35.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:35.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:35.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:35.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:35.895][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2024-03-02 16:05:35.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:35.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:35.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:35.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:35.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:35.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:35.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:35.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:35.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:35.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:35.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:35.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:35.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:35.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:35.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:35.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:35.923][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2024-03-02 16:05:35.924][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:35.926][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2024-03-02 16:05:35.928][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:35.929][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:35.930][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:35.932][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:35.933][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:35.934][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:35.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:35.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:35.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:35.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:35.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:35.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:35.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:35.950][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2024-03-02 16:05:35.953][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:35.954][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:35.956][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2024-03-02 16:05:36.325][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2024-03-02 16:05:36.703][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:36.705][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2024-03-02 16:05:36.709][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2024-03-02 16:05:36.713][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2024-03-02 16:05:36.715][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:36.716][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:36.718][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:36.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:36.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:36.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:36.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:36.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:36.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:36.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:36.734][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:36.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:36.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.738][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:36.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:36.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.745][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:36.746][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:36.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.748][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.750][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:36.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:36.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.755][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:36.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:36.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.759][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:36.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.766][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:36.767][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:36.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.775][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:36.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:36.798][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:36.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.801][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.807][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:36.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:36.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.814][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.815][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:36.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:36.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.819][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.821][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:36.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:36.827][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:36.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.829][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:36.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:36.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.836][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:36.837][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:36.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.840][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:36.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:36.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.846][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:36.848][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:36.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.850][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.852][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:36.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:36.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.858][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:36.859][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:36.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.862][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:36.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:36.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:36.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:36.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:36.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:36.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:36.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:36.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:36.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:36.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:36.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:36.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:36.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:36.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:36.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:36.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:36.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:36.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:36.917][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2024-03-02 16:05:36.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:36.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:36.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:36.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:36.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:36.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:36.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:36.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:36.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:36.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:36.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:36.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:36.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:36.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:36.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:36.946][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2024-03-02 16:05:36.948][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:36.950][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2024-03-02 16:05:36.951][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:36.952][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:36.954][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:36.955][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:36.956][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:36.957][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:36.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:36.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:36.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:36.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:36.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:36.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:36.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:36.996][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2024-03-02 16:05:37.000][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:37.001][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:37.022][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2024-03-02 16:05:37.395][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2024-03-02 16:05:37.768][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:37.771][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2024-03-02 16:05:37.775][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2024-03-02 16:05:37.779][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2024-03-02 16:05:37.781][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:37.782][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:37.784][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:37.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:37.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:37.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:37.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:37.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:37.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:37.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:37.800][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:37.802][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:37.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.804][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:37.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:37.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.810][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:37.812][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:37.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.814][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:37.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:37.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.821][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:37.822][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:37.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.824][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:37.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.831][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:37.832][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:37.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.835][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:37.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:37.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.841][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:37.843][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:37.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.845][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:37.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:37.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.852][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:37.853][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:37.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.855][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.857][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:37.858][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:37.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.861][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.862][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:37.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:37.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.867][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:37.869][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:37.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.871][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:37.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:37.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.878][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:37.879][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:37.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.881][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:37.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:37.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.888][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:37.890][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:37.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.892][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:37.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:37.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.898][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:37.900][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:37.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.902][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:37.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:37.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:37.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:37.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:37.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:37.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:37.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:37.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:37.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:37.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:37.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:37.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:37.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:37.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:37.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:37.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:37.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:37.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:37.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:37.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:37.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:37.959][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2024-03-02 16:05:37.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:37.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:37.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:37.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:37.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:37.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:37.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:37.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:37.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:37.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:37.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:37.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:37.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:37.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:37.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:37.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:37.998][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2024-03-02 16:05:37.999][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:38.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2024-03-02 16:05:38.003][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:38.004][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:38.006][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:38.007][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:38.008][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:38.009][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:38.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:38.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:38.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:38.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:38.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:38.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:38.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:38.025][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2024-03-02 16:05:38.029][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:38.030][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:38.032][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2024-03-02 16:05:38.406][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2024-03-02 16:05:38.780][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:38.782][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2024-03-02 16:05:38.786][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2024-03-02 16:05:38.789][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2024-03-02 16:05:38.791][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:38.793][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:38.794][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:38.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:38.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:38.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:38.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:38.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:38.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:38.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:38.810][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:38.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:38.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.814][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:38.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:38.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.820][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:38.821][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:38.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.824][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:38.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:38.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.831][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:38.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:38.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.834][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:38.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:38.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.841][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:38.842][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:38.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.844][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:38.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:38.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:38.852][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:38.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.855][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:38.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:38.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.861][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:38.862][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:38.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.865][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.866][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:38.868][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:38.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.870][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.871][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:38.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:38.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.876][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:38.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:38.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.880][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:38.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:38.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.887][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:38.888][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:38.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.890][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:38.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:38.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.897][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:38.898][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:38.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.901][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:38.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:38.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.907][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:38.908][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:38.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.911][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:38.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:38.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:38.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:38.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:38.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:38.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:38.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:38.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:38.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:38.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:38.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:38.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:38.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:38.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:38.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:38.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:38.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:38.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:38.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:38.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:38.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:38.966][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2024-03-02 16:05:38.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:38.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:38.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:38.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:38.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:38.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:38.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:38.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:38.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:38.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:38.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:38.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:38.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:38.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:38.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:38.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:38.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:38.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:39.011][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:39.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.038][private$selectFields]
biodb.TRACE[2024-03-02 16:05:39.039][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:39.041][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:39.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.047][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.054][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.057][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.059][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.060][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:39.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.078][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-03-02 16:05:39.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.104][private$selectFields]
biodb.TRACE[2024-03-02 16:05:39.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:39.107][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:39.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.113][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.118][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.119][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.120][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.125][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.127][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:39.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-03-02 16:05:39.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.178][private$selectFields]
biodb.TRACE[2024-03-02 16:05:39.179][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:39.180][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:39.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.186][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.191][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.194][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.198][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.200][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:39.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-03-02 16:05:39.217][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:39.218][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:39.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:39.260][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:39.264][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:39.265][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2024-03-02 16:05:39.267][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:39.269][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2024-03-02 16:05:39.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:39.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:39.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:39.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:39.387][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:39.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.412][private$selectFields]
biodb.TRACE[2024-03-02 16:05:39.413][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:39.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:39.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.420][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.425][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.426][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.428][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.432][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.434][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:39.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.450][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-03-02 16:05:39.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.474][private$selectFields]
biodb.TRACE[2024-03-02 16:05:39.475][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:39.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:39.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.482][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.487][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.490][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.494][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.496][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:39.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-03-02 16:05:39.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.536][private$selectFields]
biodb.TRACE[2024-03-02 16:05:39.538][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:39.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:39.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.551][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.556][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.559][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.561][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.563][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.565][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:39.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.580][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-03-02 16:05:39.582][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:39.583][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:39.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:39.600][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:39.604][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:39.605][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2024-03-02 16:05:39.607][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:39.608][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2024-03-02 16:05:39.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:39.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:39.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:39.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:39.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:39.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:39.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:39.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:39.803][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:39.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.828][private$selectFields]
biodb.TRACE[2024-03-02 16:05:39.829][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:39.830][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:39.832][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.833][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.836][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.839][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.841][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.843][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.845][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.846][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.848][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.849][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:39.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.865][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-03-02 16:05:39.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.889][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.890][private$selectFields]
biodb.TRACE[2024-03-02 16:05:39.891][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:39.892][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:39.893][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.898][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.900][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.902][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.905][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.910][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.911][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:39.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.927][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-03-02 16:05:39.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:39.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:39.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:39.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:39.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:39.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:39.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:39.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.958][private$selectFields]
biodb.TRACE[2024-03-02 16:05:39.959][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:39.960][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:39.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.966][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.971][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.973][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:39.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.978][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.979][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:39.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:39.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:39.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:39.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-03-02 16:05:39.996][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:39.997][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:39.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:40.013][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:40.017][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:40.019][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2024-03-02 16:05:40.020][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:40.022][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2024-03-02 16:05:40.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:40.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:40.079][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:40.083][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:40.084][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2024-03-02 16:05:40.086][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:40.087][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2024-03-02 16:05:40.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:40.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:40.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:40.171][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:40.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.197][private$selectFields]
biodb.TRACE[2024-03-02 16:05:40.198][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:40.199][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:40.200][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.205][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.210][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.212][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.217][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.218][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:40.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.234][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-03-02 16:05:40.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.258][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.259][private$selectFields]
biodb.TRACE[2024-03-02 16:05:40.261][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:40.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:40.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.268][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.272][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.274][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.275][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.280][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.281][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:40.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.297][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-03-02 16:05:40.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.328][private$selectFields]
biodb.TRACE[2024-03-02 16:05:40.330][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:40.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:40.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.335][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.337][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.342][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.343][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.344][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.349][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.350][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:40.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.366][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-03-02 16:05:40.367][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:40.368][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:40.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:40.407][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:40.411][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:40.413][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-03-02 16:05:40.414][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:40.416][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-03-02 16:05:40.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:40.446][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:40.450][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:40.452][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-03-02 16:05:40.454][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:40.455][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-03-02 16:05:40.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:40.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:40.513][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:40.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.538][private$selectFields]
biodb.TRACE[2024-03-02 16:05:40.539][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:40.540][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:40.541][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.546][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.551][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.553][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.558][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.559][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:40.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.575][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-03-02 16:05:40.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.600][private$selectFields]
biodb.TRACE[2024-03-02 16:05:40.601][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:40.602][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:40.603][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.608][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.611][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.613][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.615][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.620][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.621][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.637][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:05:40.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.662][private$selectFields]
biodb.TRACE[2024-03-02 16:05:40.664][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:40.665][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:40.666][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.671][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.676][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.678][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.683][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.684][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:40.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.700][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-03-02 16:05:40.701][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:40.703][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:40.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:40.726][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:40.730][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:40.732][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-03-02 16:05:40.734][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:40.735][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-03-02 16:05:40.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:40.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:40.793][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:40.797][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:40.798][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-03-02 16:05:40.800][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:40.801][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-03-02 16:05:40.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:40.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:40.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:40.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:40.886][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:40.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.912][private$selectFields]
biodb.TRACE[2024-03-02 16:05:40.913][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:40.914][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:40.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.920][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.921][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.925][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.927][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.932][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.933][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:05:40.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:40.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:40.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:40.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:40.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:40.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:40.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.975][private$selectFields]
biodb.TRACE[2024-03-02 16:05:40.976][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:40.977][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:40.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.983][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.988][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.990][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:40.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:40.995][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:40.996][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:40.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:40.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-03-02 16:05:41.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.036][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.037][private$selectFields]
biodb.TRACE[2024-03-02 16:05:41.038][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:41.039][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:41.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.045][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.050][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.051][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.052][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.053][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.057][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.058][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:41.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.074][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-03-02 16:05:41.075][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:41.076][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:41.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:41.093][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:41.097][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:41.098][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-03-02 16:05:41.100][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:41.101][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-03-02 16:05:41.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.328][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:41.332][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:41.334][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-03-02 16:05:41.335][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:41.337][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-03-02 16:05:41.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.424][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:41.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.450][private$selectFields]
biodb.TRACE[2024-03-02 16:05:41.451][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:41.452][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:41.453][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.454][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.455][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.458][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.462][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.464][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.465][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.469][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.471][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:41.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.486][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-03-02 16:05:41.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.519][private$selectFields]
biodb.TRACE[2024-03-02 16:05:41.520][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:41.521][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:41.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.527][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.532][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.534][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.539][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.540][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:41.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-03-02 16:05:41.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.582][private$selectFields]
biodb.TRACE[2024-03-02 16:05:41.583][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:41.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:41.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.590][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.595][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.597][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.602][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.603][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:41.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.619][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-03-02 16:05:41.621][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:41.622][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:41.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:41.665][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:41.670][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:41.671][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2024-03-02 16:05:41.673][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:41.675][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2024-03-02 16:05:41.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:41.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:41.842][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:41.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.867][private$selectFields]
biodb.TRACE[2024-03-02 16:05:41.868][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:41.869][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:41.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.873][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.875][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.880][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.882][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.887][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.888][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:41.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.911][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:05:41.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.936][private$selectFields]
biodb.TRACE[2024-03-02 16:05:41.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:41.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:41.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.944][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.949][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.951][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.956][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.957][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:41.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-03-02 16:05:41.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:41.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:41.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:41.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:41.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:41.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:41.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:41.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:41.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:41.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:41.995][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:41.997][private$selectFields]
biodb.TRACE[2024-03-02 16:05:41.998][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:41.999][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:42.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.005][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.009][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.010][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.011][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.016][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.017][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:42.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.033][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-03-02 16:05:42.034][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:42.035][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:42.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:42.052][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:42.056][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:42.057][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2024-03-02 16:05:42.059][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:42.060][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2024-03-02 16:05:42.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.146][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:42.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.171][private$selectFields]
biodb.TRACE[2024-03-02 16:05:42.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:42.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:42.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.176][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.179][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.180][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.181][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.183][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.186][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.190][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.191][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:42.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:05:42.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.231][private$selectFields]
biodb.TRACE[2024-03-02 16:05:42.233][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:42.234][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:42.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.240][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.244][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.247][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.251][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.252][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:42.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.268][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-03-02 16:05:42.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.299][private$selectFields]
biodb.TRACE[2024-03-02 16:05:42.301][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:42.302][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:42.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.307][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.312][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.314][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:42.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.319][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.320][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:42.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:42.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.336][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-03-02 16:05:42.337][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:42.338][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:42.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:42.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:42.358][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:42.360][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2024-03-02 16:05:42.361][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:42.363][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2024-03-02 16:05:42.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:42.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:42.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:42.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:42.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:42.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:42.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:42.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:42.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:42.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:42.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:42.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:43.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:43.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:43.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:43.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:43.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:43.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:43.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:43.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:43.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:43.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:43.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:43.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:43.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:43.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:43.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:43.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:43.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:43.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:43.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:43.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:43.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:43.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:43.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:43.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:43.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:43.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:43.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:43.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:43.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:43.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:43.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:43.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:43.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:43.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:43.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:43.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:43.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:43.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:43.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:43.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:43.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:43.143][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:43.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:43.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:43.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:43.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:43.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:43.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:43.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:43.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:43.168][private$selectFields]
biodb.TRACE[2024-03-02 16:05:43.169][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:43.170][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:43.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:43.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.176][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.180][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:43.183][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:43.184][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.188][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.189][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:43.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-03-02 16:05:43.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:43.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:43.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:43.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:43.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:43.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:43.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:43.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:43.230][private$selectFields]
biodb.TRACE[2024-03-02 16:05:43.231][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:43.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:43.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:43.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.238][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.243][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:43.245][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:43.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.250][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.251][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:43.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.267][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-03-02 16:05:43.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:43.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:43.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:43.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:43.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:43.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:43.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:43.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:43.291][private$selectFields]
biodb.TRACE[2024-03-02 16:05:43.292][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:43.293][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:43.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:43.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.299][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.304][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:43.307][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:43.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.311][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.313][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:43.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:43.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.329][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-03-02 16:05:43.330][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:43.331][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 16:05:43.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:43.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:43.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:43.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:43.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:43.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:43.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:43.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:43.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:43.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:43.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:43.429][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:43.433][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:43.435][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:43.437][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:05:43.818][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:05:44.375][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:44.378][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2024-03-02 16:05:44.383][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2024-03-02 16:05:44.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:44.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:44.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:44.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:44.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:44.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:44.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:44.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:44.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:44.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:44.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:44.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:44.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:44.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:44.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:44.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:44.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:44.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:44.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:44.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:44.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:44.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:44.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:44.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:44.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:44.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:44.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:44.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:44.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:44.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:44.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:44.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:44.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:44.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:44.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:44.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:44.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:44.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:44.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:44.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:44.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:44.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:44.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:44.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:44.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:44.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:44.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:44.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:44.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:44.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:44.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:44.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:44.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:44.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:44.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:44.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:44.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:44.550][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2024-03-02 16:05:44.551][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:44.553][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2024-03-02 16:05:44.555][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:44.556][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:44.557][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:44.559][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:44.560][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:44.561][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:44.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:44.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:44.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:44.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:44.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:44.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:44.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:44.578][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2024-03-02 16:05:44.581][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:44.583][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:44.584][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2024-03-02 16:05:44.956][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2024-03-02 16:05:45.328][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:45.331][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2024-03-02 16:05:45.336][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2024-03-02 16:05:45.339][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2024-03-02 16:05:45.341][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:45.342][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:45.344][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:45.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:45.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:45.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:45.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:45.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:45.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:45.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:45.360][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:45.362][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:45.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.364][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:45.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:45.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.370][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:45.372][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:45.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.374][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.375][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:45.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:45.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.381][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:45.382][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:45.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.384][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:45.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:45.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.391][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:45.392][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:45.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.394][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:45.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:45.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:45.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:45.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.404][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:45.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:45.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.411][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:45.412][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:45.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.414][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.416][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:45.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:45.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.421][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:45.422][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:45.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.425][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.426][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.431][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:45.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:45.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.435][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:45.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:45.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.441][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:45.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:45.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.445][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:45.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:45.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.451][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:45.452][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:45.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.455][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.456][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:45.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:45.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.461][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:45.462][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:45.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.465][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.466][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:45.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:45.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:45.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:45.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:45.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:45.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:45.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:45.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:45.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:45.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:45.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:45.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:45.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:45.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:45.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:45.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:45.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:45.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:45.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:45.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:45.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:45.520][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2024-03-02 16:05:45.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:45.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:45.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:45.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:45.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:45.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:45.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:45.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:45.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:45.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:45.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:45.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:45.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:45.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:45.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:45.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:45.558][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2024-03-02 16:05:45.559][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:45.561][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2024-03-02 16:05:45.563][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:45.564][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:45.565][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:45.567][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:45.568][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:45.569][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:45.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:45.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:45.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:45.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:45.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:45.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:45.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:45.585][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2024-03-02 16:05:45.588][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:45.589][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:45.591][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2024-03-02 16:05:45.964][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2024-03-02 16:05:46.340][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:46.342][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2024-03-02 16:05:46.346][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2024-03-02 16:05:46.349][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2024-03-02 16:05:46.351][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:46.353][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:46.354][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:46.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:46.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:46.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:46.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:46.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:46.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:46.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:46.370][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:46.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:46.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.373][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:46.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:46.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.380][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:46.381][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:46.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.383][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:46.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:46.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.390][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:46.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:46.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.393][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:46.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:46.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.400][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:46.401][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:46.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.403][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:46.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:46.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.410][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:46.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:46.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.413][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:46.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:46.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.420][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:46.421][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:46.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.423][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:46.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:46.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.430][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:46.431][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:46.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.433][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.435][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:46.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:46.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.440][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:46.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:46.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.443][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:46.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:46.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.450][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:46.451][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:46.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.453][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:46.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:46.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.460][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:46.461][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:46.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.464][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.465][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:46.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:46.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:46.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:46.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.474][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:46.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:46.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:46.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:46.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:46.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:46.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:46.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:46.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:46.529][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2024-03-02 16:05:46.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:46.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:46.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:46.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:46.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:46.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:46.545][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:46.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:46.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:46.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:46.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:46.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:46.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:46.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:46.571][private$selectFields]
biodb.TRACE[2024-03-02 16:05:46.572][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:46.573][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:46.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:46.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.579][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.584][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:46.587][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:46.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.592][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.593][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:46.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.609][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-03-02 16:05:46.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:46.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:46.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:46.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:46.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:46.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:46.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:46.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:46.634][private$selectFields]
biodb.TRACE[2024-03-02 16:05:46.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:46.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:46.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:46.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.642][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.647][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:46.650][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:46.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.654][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.656][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:46.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.704][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-03-02 16:05:46.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:46.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:46.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:46.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:46.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:46.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:46.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:46.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:46.729][private$selectFields]
biodb.TRACE[2024-03-02 16:05:46.730][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:46.731][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:46.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:46.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.735][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.737][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.742][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.743][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:46.744][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:46.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.747][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.749][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.750][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:46.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:46.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:46.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:46.766][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2024-03-02 16:05:46.767][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:46.769][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:46.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:46.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:46.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:46.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:46.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:46.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:46.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:46.786][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:46.790][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:46.791][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:46.794][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:05:47.179][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:05:47.740][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:47.742][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2024-03-02 16:05:47.748][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2024-03-02 16:05:47.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:47.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:47.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:47.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:47.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:47.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:47.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:47.771][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2024-03-02 16:05:47.772][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:47.774][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2024-03-02 16:05:47.776][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:47.777][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:47.778][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:47.780][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:47.781][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:47.782][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:47.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:47.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:47.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:47.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:47.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:47.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:47.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:47.799][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2024-03-02 16:05:47.802][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:47.803][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:47.805][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2024-03-02 16:05:48.177][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2024-03-02 16:05:48.549][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:48.552][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2024-03-02 16:05:48.556][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2024-03-02 16:05:48.560][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2024-03-02 16:05:48.562][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:48.564][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:48.565][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:48.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:48.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:48.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:48.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:48.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:48.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:48.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:48.582][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:48.583][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:48.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.585][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:48.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:48.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.593][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:48.594][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:48.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.597][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.599][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:48.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:48.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.605][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:48.606][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:48.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.609][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:48.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:48.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:48.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:48.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.620][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:48.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:48.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:48.628][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:48.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.630][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:48.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:48.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.637][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:48.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:48.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.640][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.642][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:48.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:48.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.647][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:48.648][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:48.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.651][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.652][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:48.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:48.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.659][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.661][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.667][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:48.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:48.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.671][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:48.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:48.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.678][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:48.679][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:48.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.681][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:48.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:48.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.688][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:48.689][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:48.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.692][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:48.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:48.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:48.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:48.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:48.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:48.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:48.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:48.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:48.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:48.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:48.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:48.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:48.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:48.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:48.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:48.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:48.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:48.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:48.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:48.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:48.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:48.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:48.748][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2024-03-02 16:05:48.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:48.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:48.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:48.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:48.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:48.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:48.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:48.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:48.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:48.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:48.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:48.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:48.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:48.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:48.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:48.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:48.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:48.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:48.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:48.819][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2024-03-02 16:05:48.820][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:48.822][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2024-03-02 16:05:48.824][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:48.825][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:48.827][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:48.828][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:48.829][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:48.830][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:48.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:48.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:48.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:48.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:48.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:48.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:48.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:48.846][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2024-03-02 16:05:48.850][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:48.851][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:48.853][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2024-03-02 16:05:49.228][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2024-03-02 16:05:49.599][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:49.601][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2024-03-02 16:05:49.606][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2024-03-02 16:05:49.609][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2024-03-02 16:05:49.611][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:49.612][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:49.614][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:49.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:49.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:49.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:49.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:49.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:49.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:49.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:49.629][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:49.631][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:49.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.633][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:49.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.639][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:49.641][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:49.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.643][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:49.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:49.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.649][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:49.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:49.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.653][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:49.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.659][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:49.660][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:49.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.663][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:49.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:49.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:49.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.673][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:49.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:49.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.679][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:49.680][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:49.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.683][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.684][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:49.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:49.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.689][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:49.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:49.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.692][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.694][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:49.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:49.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.702][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.708][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:49.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:49.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.712][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:49.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:49.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.718][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:49.720][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:49.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.722][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:49.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.728][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:49.729][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:49.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:49.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:49.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:49.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:49.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:49.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:49.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:49.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:49.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:49.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:49.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:49.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:49.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:49.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:49.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:49.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:49.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:49.785][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2024-03-02 16:05:49.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:49.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:49.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:49.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:49.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:49.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:49.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:49.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:49.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:49.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:49.828][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:49.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:49.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:49.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:49.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:49.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:49.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:49.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:49.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.852][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:49.853][private$selectFields]
biodb.TRACE[2024-03-02 16:05:49.854][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:49.855][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:49.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:49.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.861][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.866][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:49.868][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:49.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.873][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.874][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:49.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.890][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2024-03-02 16:05:49.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:49.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:49.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:49.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:49.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:49.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:49.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:49.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.913][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:49.914][private$selectFields]
biodb.TRACE[2024-03-02 16:05:49.915][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:49.925][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:49.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:49.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.931][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.936][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:49.938][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:49.939][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.940][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.943][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.944][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:49.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.959][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:05:49.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:49.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:49.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:49.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:49.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:49.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:49.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:49.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:49.984][private$selectFields]
biodb.TRACE[2024-03-02 16:05:49.985][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:49.986][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:49.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:49.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.992][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:49.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:49.997][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:49.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:49.999][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:50.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:50.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:50.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:50.004][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:50.005][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:50.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:50.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:50.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:50.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:50.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:50.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:50.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:50.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:50.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:50.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:50.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:50.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:50.021][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-03-02 16:05:50.022][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:50.023][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:50.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:50.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:50.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:50.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:50.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:50.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:50.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:50.040][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:50.044][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:50.045][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:50.048][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:05:50.422][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:05:50.800][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:50.802][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2024-03-02 16:05:50.807][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2024-03-02 16:05:50.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:50.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:50.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:50.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:50.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:50.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:50.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:50.823][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2024-03-02 16:05:50.825][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:50.826][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2024-03-02 16:05:50.828][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:50.829][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:50.830][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:50.832][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:50.833][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:50.834][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:50.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:50.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:50.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:50.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:50.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:50.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:50.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:50.850][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2024-03-02 16:05:50.853][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:50.854][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:50.856][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2024-03-02 16:05:51.228][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2024-03-02 16:05:51.602][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:51.604][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2024-03-02 16:05:51.609][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2024-03-02 16:05:51.612][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2024-03-02 16:05:51.614][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:51.615][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:51.617][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:51.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:51.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:51.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:51.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:51.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:51.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:51.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:51.633][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:51.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:51.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.636][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:51.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:51.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.643][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:51.644][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:51.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.646][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:51.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:51.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.652][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:51.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:51.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.656][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:51.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:51.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:51.663][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:51.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.665][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:51.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:51.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:51.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:51.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.675][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:51.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:51.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.681][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:51.683][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:51.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.685][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.686][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:51.688][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:51.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.690][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.691][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:51.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:51.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:51.697][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:51.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.700][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:51.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:51.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.706][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:51.707][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:51.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.709][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:51.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:51.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.716][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:51.717][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:51.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.720][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.721][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:51.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:51.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.726][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:51.727][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:51.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.729][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:51.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:51.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:51.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:51.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:51.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:51.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:51.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:51.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:51.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:51.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:51.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:51.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:51.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:51.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:51.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:51.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:51.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:51.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:51.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:51.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:51.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:51.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:51.783][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2024-03-02 16:05:51.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:51.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:51.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:51.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:51.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:51.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:51.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:51.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:51.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:51.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:51.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:51.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:51.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:51.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:51.824][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2024-03-02 16:05:51.825][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:51.827][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2024-03-02 16:05:51.829][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:51.830][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:51.831][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:51.832][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:51.833][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:51.835][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:51.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:51.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:51.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:51.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:51.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:51.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:51.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:51.850][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2024-03-02 16:05:51.853][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:51.855][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:51.856][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2024-03-02 16:05:52.227][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2024-03-02 16:05:52.600][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:52.602][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2024-03-02 16:05:52.606][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2024-03-02 16:05:52.609][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2024-03-02 16:05:52.611][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:52.613][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:52.614][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:52.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:52.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:52.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:52.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:52.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:52.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:52.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:52.631][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:52.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:52.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.634][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:52.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:52.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.640][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:52.642][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:52.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.644][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.645][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:52.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:52.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.650][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:52.651][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:52.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.654][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:52.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:52.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.660][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:52.661][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:52.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.663][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:52.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.670][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:52.671][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:52.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.673][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:52.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:52.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.679][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:52.681][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:52.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.683][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.684][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:52.686][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:52.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.688][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.689][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:52.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:52.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.694][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:52.696][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:52.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.698][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:52.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:52.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.704][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:52.705][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:52.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.708][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:52.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:52.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.714][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:52.716][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:52.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.718][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:52.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:52.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.724][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:52.725][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:52.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.728][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:52.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:52.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:52.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:52.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:52.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:52.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:52.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:52.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:52.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:52.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:52.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:52.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:52.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:52.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:52.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:52.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:52.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:52.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:52.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:52.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:52.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:52.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:52.782][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2024-03-02 16:05:52.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:52.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:52.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:52.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:52.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:52.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:52.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:52.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:52.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:52.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:52.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:52.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:52.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:52.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:52.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:52.809][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2024-03-02 16:05:52.811][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:52.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2024-03-02 16:05:52.814][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:52.815][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:52.816][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:52.818][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:52.819][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:52.820][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:52.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:52.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:52.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:52.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:52.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:52.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:52.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:52.836][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2024-03-02 16:05:52.840][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:52.841][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:52.843][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2024-03-02 16:05:53.212][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2024-03-02 16:05:53.582][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:53.585][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2024-03-02 16:05:53.589][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2024-03-02 16:05:53.592][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2024-03-02 16:05:53.594][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:53.596][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:53.597][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:53.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:53.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:53.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:53.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:53.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:53.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:53.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:53.614][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:53.615][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:53.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.617][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:53.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.624][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:53.625][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:53.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.627][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.629][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:53.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:53.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.634][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:53.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:53.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.638][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:53.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:53.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:53.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:53.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.648][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:53.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:53.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:53.656][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:53.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.659][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:53.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:53.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.665][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:53.666][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:53.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.681][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.682][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:53.684][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:53.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.686][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.687][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:53.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:53.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:53.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.696][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:53.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:53.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.703][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:53.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:53.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.706][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:53.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:53.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.713][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:53.714][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:53.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:53.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:53.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.722][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:53.724][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:53.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.726][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:53.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:53.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:53.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:53.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:53.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:53.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:53.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:53.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:53.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:53.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:53.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:53.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:53.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:53.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:53.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:53.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:53.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:53.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:53.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:53.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:53.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:53.780][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2024-03-02 16:05:53.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:53.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:53.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:53.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:53.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:53.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:53.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:53.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:53.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:53.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:53.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:53.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:53.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:53.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:53.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:53.808][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2024-03-02 16:05:53.810][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:53.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2024-03-02 16:05:53.813][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:53.814][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:53.816][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:53.817][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:53.818][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:53.819][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:53.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:53.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:53.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:53.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:53.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:53.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:53.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:53.835][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2024-03-02 16:05:53.839][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:53.840][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:53.842][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2024-03-02 16:05:54.212][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2024-03-02 16:05:54.583][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:54.585][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2024-03-02 16:05:54.590][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2024-03-02 16:05:54.593][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2024-03-02 16:05:54.595][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:54.596][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:54.598][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:54.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:54.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:54.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:54.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:54.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:54.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:54.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:54.614][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:54.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:54.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.618][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:54.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:54.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.624][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:54.626][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:54.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.628][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.629][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:54.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:54.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.634][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:54.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:54.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.638][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:54.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:54.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.644][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:54.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:54.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.648][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:54.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:54.656][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:54.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.658][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:54.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:54.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.665][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:54.666][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:54.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.668][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:54.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:54.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.675][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:54.676][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:54.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.678][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.680][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:54.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:54.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.685][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.686][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.689][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.695][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:54.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:54.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.699][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.705][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:54.707][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:54.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.709][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:54.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:54.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.719][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:54.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:54.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:54.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:54.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:54.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:54.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:54.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:54.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:54.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:54.775][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2024-03-02 16:05:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:54.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:54.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:54.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:54.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:54.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:54.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:54.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:54.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:54.829][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:54.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:54.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:54.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:54.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:54.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:54.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:54.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:54.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:54.854][private$selectFields]
biodb.TRACE[2024-03-02 16:05:54.856][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:54.857][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:54.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:54.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.863][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.867][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:54.870][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:54.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.875][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.876][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:54.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2024-03-02 16:05:54.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:54.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:54.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:54.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:54.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:54.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:54.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:54.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:54.918][private$selectFields]
biodb.TRACE[2024-03-02 16:05:54.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:54.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:54.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:54.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.926][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.931][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:54.933][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:54.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.938][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.939][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:54.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2024-03-02 16:05:54.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:54.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:54.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:54.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:54.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:54.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:54.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:54.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:54.981][private$selectFields]
biodb.TRACE[2024-03-02 16:05:54.982][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:54.983][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:54.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:54.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.989][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:54.994][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:54.995][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:54.996][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:54.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:54.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.001][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.002][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:55.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.018][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2024-03-02 16:05:55.020][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:55.021][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:55.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:55.060][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:55.065][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:55.066][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-03-02 16:05:55.068][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:55.069][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-03-02 16:05:55.073][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:55.077][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:55.079][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-03-02 16:05:55.080][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:55.082][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-03-02 16:05:55.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:55.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:55.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:55.167][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:55.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.193][private$selectFields]
biodb.TRACE[2024-03-02 16:05:55.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:55.195][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:55.197][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.213][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.216][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.220][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.222][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.238][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-03-02 16:05:55.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.261][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.263][private$selectFields]
biodb.TRACE[2024-03-02 16:05:55.264][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:55.265][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:55.266][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.271][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.275][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.278][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.283][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.284][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:55.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:05:55.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.325][private$selectFields]
biodb.TRACE[2024-03-02 16:05:55.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:55.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:55.328][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.333][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.338][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.340][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.345][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.346][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:55.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.363][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-03-02 16:05:55.364][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:55.365][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:55.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:55.382][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:55.386][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:55.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-03-02 16:05:55.389][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:55.391][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-03-02 16:05:55.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:55.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:55.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:55.477][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:55.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.503][private$selectFields]
biodb.TRACE[2024-03-02 16:05:55.504][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:55.505][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:55.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.511][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.516][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.518][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.523][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.524][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.540][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:05:55.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.566][private$selectFields]
biodb.TRACE[2024-03-02 16:05:55.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:55.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:55.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.574][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.579][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.580][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.582][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.586][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.588][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:55.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.611][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-03-02 16:05:55.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.637][private$selectFields]
biodb.TRACE[2024-03-02 16:05:55.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:55.639][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:55.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.641][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.645][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.646][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.650][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.651][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.652][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.653][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.654][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.657][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.658][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:55.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.674][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-03-02 16:05:55.675][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:55.676][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:55.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:55.694][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:55.698][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:05:55.699][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-03-02 16:05:55.701][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:05:55.703][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-03-02 16:05:55.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:55.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:55.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:55.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:55.790][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:05:55.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.817][private$selectFields]
biodb.TRACE[2024-03-02 16:05:55.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:55.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:55.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.823][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.825][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.833][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.834][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.837][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.839][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:55.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-03-02 16:05:55.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.880][private$selectFields]
biodb.TRACE[2024-03-02 16:05:55.881][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:55.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:55.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.888][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.893][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.895][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.900][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.901][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:55.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-03-02 16:05:55.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:55.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:55.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:55.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:55.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:55.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:55.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:55.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.942][private$selectFields]
biodb.TRACE[2024-03-02 16:05:55.943][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:05:55.945][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:05:55.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.951][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.955][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.958][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:05:55.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.963][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.964][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:05:55.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:55.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:55.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:55.980][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-03-02 16:05:55.981][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:05:55.982][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:05:56.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:56.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:56.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:56.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:56.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:56.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:56.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:56.031][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:05:56.035][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:56.036][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:56.039][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:05:56.416][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:05:56.798][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:56.801][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2024-03-02 16:05:56.806][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2024-03-02 16:05:56.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:56.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:56.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:56.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:56.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:56.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:56.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:56.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:56.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:56.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:56.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:56.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:56.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:56.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:56.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:56.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:56.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:56.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:56.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:56.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:56.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:56.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:56.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:56.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:56.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:56.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:56.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:56.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:56.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:56.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:56.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:56.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:56.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:56.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:56.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:56.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:56.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:56.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:56.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:56.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:56.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:56.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:56.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:56.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:56.879][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2024-03-02 16:05:56.881][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:56.883][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2024-03-02 16:05:56.884][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:56.886][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:56.887][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:56.888][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:56.889][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:56.891][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:56.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:56.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:56.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:56.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:56.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:56.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:56.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:56.907][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2024-03-02 16:05:56.911][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:56.912][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:56.914][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2024-03-02 16:05:57.290][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2024-03-02 16:05:57.662][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:57.665][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2024-03-02 16:05:57.669][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2024-03-02 16:05:57.672][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2024-03-02 16:05:57.674][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:57.675][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:57.677][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:57.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:57.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:57.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:57.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:57.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:57.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:57.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:57.693][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:57.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:57.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.696][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:57.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:57.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.702][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:57.704][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:57.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.706][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.707][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:57.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:57.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.712][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:57.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:57.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:57.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:57.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.722][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:57.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:57.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.726][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:57.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:57.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.732][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:57.733][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:57.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.736][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:57.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:57.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.742][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:57.743][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:57.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.746][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.747][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:57.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:57.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.752][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:57.753][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:57.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.756][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.757][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:57.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:57.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:57.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.765][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:57.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:57.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.772][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:57.773][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:57.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.775][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:57.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:57.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.782][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:57.783][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:57.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.785][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:57.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:57.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.792][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:57.793][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:57.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.795][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:57.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:57.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:57.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:57.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:57.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:57.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:57.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:57.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:57.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:57.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:57.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:57.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:57.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:57.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:57.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:57.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:57.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:57.849][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2024-03-02 16:05:57.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:57.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:57.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:57.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:57.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:57.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:57.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:57.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:57.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:57.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:57.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:57.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:57.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:57.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:57.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:57.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:57.878][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2024-03-02 16:05:57.879][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:57.881][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2024-03-02 16:05:57.882][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:57.883][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:57.885][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:57.886][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:57.899][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:57.900][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:57.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:57.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:57.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:57.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:57.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:57.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:57.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:57.917][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2024-03-02 16:05:57.920][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:57.921][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:57.923][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2024-03-02 16:05:58.294][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2024-03-02 16:05:58.667][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:58.670][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2024-03-02 16:05:58.674][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2024-03-02 16:05:58.677][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2024-03-02 16:05:58.679][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:58.680][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:58.682][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:58.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:58.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:58.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:58.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:58.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:58.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:58.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:58.697][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:58.699][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:58.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.701][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:58.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:58.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.707][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:58.709][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:58.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.711][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.712][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:58.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:58.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.717][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:58.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:58.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.721][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:58.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:58.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:58.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:58.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.731][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:58.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:58.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.737][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:58.738][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:58.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.741][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:58.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:58.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:58.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:58.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.751][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.752][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:58.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:58.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.757][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:58.758][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:58.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.761][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.762][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:58.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:58.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.767][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:58.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:58.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.771][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:58.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:58.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.777][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:58.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:58.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.781][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:58.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:58.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.787][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:58.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:58.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.791][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.792][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:58.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.797][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:58.799][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:58.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.801][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:58.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:58.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:58.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:58.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:58.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:58.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:58.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:58.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:58.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:58.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:58.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:58.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:58.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:58.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:58.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:58.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:58.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:58.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:58.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:58.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:58.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:58.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:58.856][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2024-03-02 16:05:58.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:58.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:58.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:58.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:58.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:58.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:58.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:58.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:58.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:58.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:58.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:58.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:58.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:58.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:58.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:58.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:58.885][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2024-03-02 16:05:58.886][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:58.888][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2024-03-02 16:05:58.890][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:58.891][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:58.892][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:58.893][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:58.895][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:58.896][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:58.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:58.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:58.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:58.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:58.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:58.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:58.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:58.912][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2024-03-02 16:05:58.916][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:58.917][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:58.918][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2024-03-02 16:05:59.289][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2024-03-02 16:05:59.660][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:05:59.662][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2024-03-02 16:05:59.667][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2024-03-02 16:05:59.671][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2024-03-02 16:05:59.673][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:05:59.675][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:05:59.676][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:05:59.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:59.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:59.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:59.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:59.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:59.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:59.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:05:59.693][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:59.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:59.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.696][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:59.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:59.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.703][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:59.704][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:59.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.707][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.709][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:05:59.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:05:59.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.714][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:59.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:59.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.718][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:05:59.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:05:59.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.726][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:59.727][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:59.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.729][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:05:59.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:05:59.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.736][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:59.737][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:59.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.740][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:05:59.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:05:59.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.746][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:59.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:59.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.750][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.752][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:59.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:05:59.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.756][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:59.758][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:59.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.760][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.762][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:05:59.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:05:59.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.767][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:59.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:59.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.782][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:59.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:59.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.789][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:59.790][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:59.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.792][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:05:59.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:05:59.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.799][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:59.800][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:59.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.803][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.804][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:05:59.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:05:59.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.809][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:59.810][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:59.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.813][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:05:59.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:05:59.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:59.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:59.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:59.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:59.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:59.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:59.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:05:59.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:05:59.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:59.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:59.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:59.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:59.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:59.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:59.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:59.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:59.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:59.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:59.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:05:59.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:05:59.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:59.871][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2024-03-02 16:05:59.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:59.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:59.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:59.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:59.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:05:59.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:59.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:05:59.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:05:59.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:05:59.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:59.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:59.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:59.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:59.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:59.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:59.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:59.901][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2024-03-02 16:05:59.902][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:05:59.905][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2024-03-02 16:05:59.906][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:05:59.908][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:05:59.909][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:05:59.911][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:05:59.912][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:05:59.913][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:05:59.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:05:59.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:05:59.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:05:59.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:05:59.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:05:59.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:05:59.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:05:59.930][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2024-03-02 16:05:59.934][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:05:59.935][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:05:59.937][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2024-03-02 16:06:00.307][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2024-03-02 16:06:00.678][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:00.681][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2024-03-02 16:06:00.685][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2024-03-02 16:06:00.688][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2024-03-02 16:06:00.690][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:00.691][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:00.693][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:00.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:00.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:00.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:00.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:00.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:00.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:00.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:00.709][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:00.710][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:00.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.712][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:00.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:00.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.719][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:00.720][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:00.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.722][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.724][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:00.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:00.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.728][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:00.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:00.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:00.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:00.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.738][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:00.739][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:00.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.742][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:00.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:00.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.748][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:00.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:00.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.751][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:00.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:00.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.758][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:00.759][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:00.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.761][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.763][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:00.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:00.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.768][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:00.769][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:00.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.771][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.773][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:00.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:00.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.777][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:00.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:00.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.781][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:00.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:00.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.787][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:00.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:00.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.791][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:00.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:00.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.797][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:00.799][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:00.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.801][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.802][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:00.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:00.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.807][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:00.808][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:00.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.811][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:00.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:00.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:00.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:00.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:00.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:00.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:00.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:00.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:00.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:00.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:00.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:00.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:00.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:00.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:00.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:00.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:00.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:00.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:00.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:00.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:00.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:00.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:00.865][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2024-03-02 16:06:00.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:00.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:00.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:00.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:00.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:00.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:00.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:00.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:00.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:00.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:00.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:00.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:00.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:00.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:00.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:00.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:00.893][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2024-03-02 16:06:00.894][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:00.896][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2024-03-02 16:06:00.897][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:00.899][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:00.900][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:00.901][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:00.902][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:00.913][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:00.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:00.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:00.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:00.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:00.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:00.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:00.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:00.929][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2024-03-02 16:06:00.932][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:00.934][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:00.935][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2024-03-02 16:06:01.312][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2024-03-02 16:06:01.684][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:01.686][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2024-03-02 16:06:01.690][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2024-03-02 16:06:01.693][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2024-03-02 16:06:01.695][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:01.697][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:01.698][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:01.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:01.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:01.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:01.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:01.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:01.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:01.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:01.714][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:01.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:01.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.717][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:01.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:01.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.724][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:01.725][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:01.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.727][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:01.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:01.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.733][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:01.735][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:01.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.737][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:01.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:01.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.743][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:01.745][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:01.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.747][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:01.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:01.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.753][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:01.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:01.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.757][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:01.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:01.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:01.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:01.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.767][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.768][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:01.769][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:01.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.772][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.773][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:01.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:01.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.781][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.788][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:01.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:01.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.791][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:01.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:01.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.798][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:01.799][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:01.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.801][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.803][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:01.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:01.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.807][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:01.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:01.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.811][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:01.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:01.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:01.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:01.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:01.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:01.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:01.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:01.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:01.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:01.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:01.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:01.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:01.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:01.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:01.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:01.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:01.865][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2024-03-02 16:06:01.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:01.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:01.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:01.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:01.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:01.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:01.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:01.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:01.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:01.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:01.907][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:01.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:01.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:01.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:01.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:01.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:01.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:01.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:01.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:01.932][private$selectFields]
biodb.TRACE[2024-03-02 16:06:01.933][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:01.935][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:01.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:01.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.940][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.945][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:01.947][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:01.949][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.952][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.953][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:01.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.969][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-03-02 16:06:01.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:01.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:01.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:01.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:01.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:01.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:01.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:01.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:01.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:01.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:01.994][private$selectFields]
biodb.TRACE[2024-03-02 16:06:01.995][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:01.996][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:01.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:01.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:01.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.002][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.006][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.007][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:02.009][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:02.010][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.011][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.013][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.014][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:02.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.039][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:06:02.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:02.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:02.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:02.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:02.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:02.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:02.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:02.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.063][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:02.064][private$selectFields]
biodb.TRACE[2024-03-02 16:06:02.065][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:02.066][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:02.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:02.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.072][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:02.079][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:02.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.088][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.089][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:02.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:02.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:02.105][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-03-02 16:06:02.107][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:02.108][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:02.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:02.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:02.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:02.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:02.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:02.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:02.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:02.124][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:02.129][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:02.130][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:02.132][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-03-02 16:06:02.517][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-03-02 16:06:03.075][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:03.078][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2024-03-02 16:06:03.083][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2024-03-02 16:06:03.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:03.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:03.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:03.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:03.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:03.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:03.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:03.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:03.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:03.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:03.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:03.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:03.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:03.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:03.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:03.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:03.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:03.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:03.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:03.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:03.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:03.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:03.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:03.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:03.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:03.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:03.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:03.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:03.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:03.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:03.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:03.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:03.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:03.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:03.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:03.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:03.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:03.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:03.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:03.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:03.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:03.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:03.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:03.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:03.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:03.159][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2024-03-02 16:06:03.161][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:03.163][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2024-03-02 16:06:03.164][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:03.165][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:03.167][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:03.168][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:03.169][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:03.170][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:03.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:03.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:03.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:03.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:03.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:03.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:03.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:03.187][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2024-03-02 16:06:03.190][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:03.191][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:03.193][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2024-03-02 16:06:03.564][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2024-03-02 16:06:03.934][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:03.937][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2024-03-02 16:06:03.941][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2024-03-02 16:06:03.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2024-03-02 16:06:03.946][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:03.948][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:03.949][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:03.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:03.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:03.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:03.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:03.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:03.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:03.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:03.965][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:03.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:03.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:03.969][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:03.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:03.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:03.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:03.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:03.975][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:03.976][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:03.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:03.978][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:03.980][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:03.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:03.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:03.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:03.985][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:03.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:03.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:03.988][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:03.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:03.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:03.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:03.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:03.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:03.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:03.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:03.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:04.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:04.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:04.006][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:04.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.008][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:04.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:04.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.014][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:04.016][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:04.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.018][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.019][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:04.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:04.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.023][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.024][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:04.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:04.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:04.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:04.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.033][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:04.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:04.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.039][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:04.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:04.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.043][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:04.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:04.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.049][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:04.051][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:04.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.053][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:04.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:04.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.059][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:04.060][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:04.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.063][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:04.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:04.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:04.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:04.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:04.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:04.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:04.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:04.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:04.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:04.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:04.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:04.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:04.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:04.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:04.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:04.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:04.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:04.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:04.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:04.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:04.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:04.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:04.130][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2024-03-02 16:06:04.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:04.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:04.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:04.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:04.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:04.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:04.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:04.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:04.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:04.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:04.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:04.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:04.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:04.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:04.158][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2024-03-02 16:06:04.159][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:04.161][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2024-03-02 16:06:04.162][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:04.164][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:04.165][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:04.166][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:04.167][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:04.169][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:04.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:04.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:04.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:04.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:04.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:04.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:04.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:04.184][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2024-03-02 16:06:04.188][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:04.189][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:04.190][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2024-03-02 16:06:04.560][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2024-03-02 16:06:04.935][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:04.937][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2024-03-02 16:06:04.942][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2024-03-02 16:06:04.945][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2024-03-02 16:06:04.947][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:04.949][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:04.950][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:04.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:04.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:04.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:04.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:04.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:04.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:04.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:04.966][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:04.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:04.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.970][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:04.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:04.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.977][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:04.978][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:04.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.980][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:04.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:04.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.987][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:04.988][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:04.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.990][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:04.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:04.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:04.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:04.997][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:04.998][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:05.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.001][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:05.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:05.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.007][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:05.009][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:05.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.011][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:05.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:05.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.018][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:05.019][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:05.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.021][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.023][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:05.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:05.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.026][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.028][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:05.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:05.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.033][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:05.034][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:05.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.036][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:05.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:05.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.043][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:05.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:05.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.046][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:05.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:05.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.053][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:05.054][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:05.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.056][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:05.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:05.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.063][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:05.064][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:05.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.066][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:05.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:05.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:05.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:05.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:05.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:05.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:05.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:05.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:05.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:05.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:05.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:05.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:05.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:05.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:05.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:05.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:05.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:05.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:05.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:05.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:05.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:05.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:05.121][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2024-03-02 16:06:05.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:05.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:05.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:05.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:05.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:05.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:05.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:05.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:05.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:05.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:05.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:05.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:05.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:05.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:05.149][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2024-03-02 16:06:05.150][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:05.152][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2024-03-02 16:06:05.154][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:05.155][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:05.156][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:05.158][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:05.159][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:05.160][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:05.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:05.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:05.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:05.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:05.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:05.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:05.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:05.176][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2024-03-02 16:06:05.179][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:05.181][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:05.182][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2024-03-02 16:06:05.551][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2024-03-02 16:06:05.923][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:05.926][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2024-03-02 16:06:05.930][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2024-03-02 16:06:05.933][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2024-03-02 16:06:05.935][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:05.936][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:05.937][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:05.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:05.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:05.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:05.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:05.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:05.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:05.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:05.953][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:05.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:05.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.957][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:05.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:05.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.963][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:05.964][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:05.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.966][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.968][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:05.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:05.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.973][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:05.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:05.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.988][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:05.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:05.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:05.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:05.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:05.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:05.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:06.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:06.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:06.006][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:06.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.008][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:06.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:06.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.014][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:06.016][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:06.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.018][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.019][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:06.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:06.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.023][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.024][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:06.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:06.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:06.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:06.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.032][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:06.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:06.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.039][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:06.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:06.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.042][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:06.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:06.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.049][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:06.050][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:06.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:06.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:06.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.058][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:06.060][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:06.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.062][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:06.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:06.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:06.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:06.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:06.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:06.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:06.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:06.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:06.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:06.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:06.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:06.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:06.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:06.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:06.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:06.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:06.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:06.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:06.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:06.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:06.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:06.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:06.116][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2024-03-02 16:06:06.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:06.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:06.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:06.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:06.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:06.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:06.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:06.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:06.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:06.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:06.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:06.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:06.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:06.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:06.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:06.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:06.144][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2024-03-02 16:06:06.145][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:06.147][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2024-03-02 16:06:06.149][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:06.150][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:06.151][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:06.153][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:06.154][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:06.155][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:06.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:06.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:06.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:06.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:06.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:06.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:06.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:06.171][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2024-03-02 16:06:06.175][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:06.176][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:06.177][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2024-03-02 16:06:06.549][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2024-03-02 16:06:06.925][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:06.930][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2024-03-02 16:06:06.996][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2024-03-02 16:06:06.999][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2024-03-02 16:06:07.001][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:07.003][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:07.004][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:07.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:07.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:07.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:07.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:07.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:07.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:07.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:07.021][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:07.022][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:07.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.024][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:07.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:07.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.031][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:07.032][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:07.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.035][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.036][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:07.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:07.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.041][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:07.043][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:07.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.045][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:07.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:07.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:07.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:07.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.055][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:07.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:07.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.062][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:07.063][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:07.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.065][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:07.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:07.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.072][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:07.073][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:07.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.075][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.077][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:07.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:07.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.081][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.082][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:07.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:07.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:07.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:07.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:07.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.097][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:07.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:07.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:07.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:07.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.108][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:07.109][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:07.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.112][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:07.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:07.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.118][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:07.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:07.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.122][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:07.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:07.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:07.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:07.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:07.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:07.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:07.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:07.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:07.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:07.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:07.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:07.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:07.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:07.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:07.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:07.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:07.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:07.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:07.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:07.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:07.186][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2024-03-02 16:06:07.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:07.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:07.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:07.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:07.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:07.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:07.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:07.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:07.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:07.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:07.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:07.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:07.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:07.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:07.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:07.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:07.215][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2024-03-02 16:06:07.216][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:07.218][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2024-03-02 16:06:07.220][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:07.221][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:07.222][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:07.223][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:07.224][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:07.226][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:07.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:07.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:07.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:07.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:07.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:07.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:07.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:07.241][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2024-03-02 16:06:07.244][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:07.246][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:07.247][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2024-03-02 16:06:07.628][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2024-03-02 16:06:08.013][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:08.016][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2024-03-02 16:06:08.020][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2024-03-02 16:06:08.023][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2024-03-02 16:06:08.025][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:08.026][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:08.027][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:08.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:08.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:08.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:08.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:08.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:08.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:08.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:08.044][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:08.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:08.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.047][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:08.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:08.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.054][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:08.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:08.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.057][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:08.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.064][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:08.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:08.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.067][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:08.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:08.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:08.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:08.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.077][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:08.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:08.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:08.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:08.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.088][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:08.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:08.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:08.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:08.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.098][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.099][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:08.101][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:08.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.103][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.104][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:08.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:08.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.109][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:08.111][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:08.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.113][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:08.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:08.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.120][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:08.121][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:08.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.123][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.130][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:08.131][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:08.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.134][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.135][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:08.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:08.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.140][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:08.141][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:08.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.144][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:08.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:08.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:08.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:08.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:08.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:08.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:08.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:08.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:08.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:08.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:08.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:08.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:08.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:08.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:08.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:08.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:08.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:08.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:08.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:08.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:08.199][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2024-03-02 16:06:08.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:08.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:08.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:08.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:08.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:08.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:08.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:08.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:08.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:08.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:08.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:08.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:08.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:08.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:08.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:08.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:08.227][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2024-03-02 16:06:08.228][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:08.230][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2024-03-02 16:06:08.231][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:08.233][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:08.234][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:08.235][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:08.236][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:08.237][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:08.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:08.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:08.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:08.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:08.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:08.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:08.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:08.253][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2024-03-02 16:06:08.257][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:08.258][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:08.259][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2024-03-02 16:06:08.634][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2024-03-02 16:06:09.003][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:09.005][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2024-03-02 16:06:09.010][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2024-03-02 16:06:09.013][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2024-03-02 16:06:09.016][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:09.017][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:09.018][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:09.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:09.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:09.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:09.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:09.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:09.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:09.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:09.035][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:09.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:09.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.038][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:09.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:09.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.045][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:09.046][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:09.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.048][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:09.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:09.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.055][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:09.056][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:09.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.059][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:09.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:09.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.065][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:09.066][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:09.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.082][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:09.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:09.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.088][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:09.090][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:09.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.092][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:09.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:09.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.099][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:09.100][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:09.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.102][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.104][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:09.105][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:09.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.107][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.109][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:09.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:09.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.114][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:09.115][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:09.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.117][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:09.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:09.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.124][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:09.125][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:09.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.127][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:09.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:09.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.134][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:09.135][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:09.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.138][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.139][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:09.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:09.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.144][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:09.146][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:09.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.148][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:09.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:09.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:09.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:09.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:09.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:09.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:09.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:09.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:09.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:09.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:09.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:09.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:09.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:09.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:09.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:09.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:09.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:09.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:09.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:09.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:09.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:09.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:09.204][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2024-03-02 16:06:09.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:09.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:09.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:09.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:09.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:09.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:09.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:09.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:09.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:09.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:09.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:09.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:09.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:09.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:09.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:09.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:09.233][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2024-03-02 16:06:09.235][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:09.237][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2024-03-02 16:06:09.238][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:09.239][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:09.241][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:09.242][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:09.243][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:09.244][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:09.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:09.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:09.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:09.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:09.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:09.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:09.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:09.260][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2024-03-02 16:06:09.264][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:09.265][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:09.267][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2024-03-02 16:06:09.636][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2024-03-02 16:06:10.009][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:10.012][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2024-03-02 16:06:10.016][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2024-03-02 16:06:10.019][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2024-03-02 16:06:10.021][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:10.022][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:10.024][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:10.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:10.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:10.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:10.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:10.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:10.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:10.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:10.040][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:10.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:10.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.043][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:10.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:10.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.050][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:10.051][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:10.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.053][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.055][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:10.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:10.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.060][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:10.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:10.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.063][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:10.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:10.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.070][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:10.071][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:10.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.073][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:10.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:10.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.080][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:10.081][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:10.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.083][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:10.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.089][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:10.091][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:10.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.094][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:10.096][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:10.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.098][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.099][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:10.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:10.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.104][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:10.106][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:10.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.108][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:10.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.114][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:10.115][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:10.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.118][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:10.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:10.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.124][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:10.125][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:10.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.128][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.129][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:10.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:10.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.134][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:10.135][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:10.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.138][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:10.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:10.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:10.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:10.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:10.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:10.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:10.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:10.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:10.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:10.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:10.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:10.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:10.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:10.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:10.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:10.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:10.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:10.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:10.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:10.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:10.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:10.192][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2024-03-02 16:06:10.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:10.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:10.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:10.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:10.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:10.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:10.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:10.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:10.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:10.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:10.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:10.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:10.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:10.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:10.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:10.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:10.229][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2024-03-02 16:06:10.230][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:10.232][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2024-03-02 16:06:10.234][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:10.235][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:10.236][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:10.237][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:10.239][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:10.240][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:10.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:10.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:10.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:10.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:10.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:10.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:10.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:10.255][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2024-03-02 16:06:10.259][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:10.260][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:10.262][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2024-03-02 16:06:10.633][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2024-03-02 16:06:11.005][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:11.008][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2024-03-02 16:06:11.012][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2024-03-02 16:06:11.015][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2024-03-02 16:06:11.017][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:11.019][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:11.020][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:11.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:11.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:11.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:11.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:11.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:11.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:11.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:11.037][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:11.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:11.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.041][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:11.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:11.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.047][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:11.048][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:11.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.050][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.052][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:11.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:11.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.057][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:11.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:11.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.060][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:11.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:11.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:11.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:11.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:11.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:11.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.077][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:11.078][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:11.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.081][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:11.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:11.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.087][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:11.088][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:11.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.092][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:11.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:11.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.097][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:11.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:11.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:11.103][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:11.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.106][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:11.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:11.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.112][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:11.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:11.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.116][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:11.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:11.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.122][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:11.124][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:11.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.126][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.128][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:11.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:11.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.133][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:11.134][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:11.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.136][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:11.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:11.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:11.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:11.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:11.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:11.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:11.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:11.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:11.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:11.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:11.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:11.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:11.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:11.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:11.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:11.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:11.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:11.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:11.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:11.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:11.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:11.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:11.192][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2024-03-02 16:06:11.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:11.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:11.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:11.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:11.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:11.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:11.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:11.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:11.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:11.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:11.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:11.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:11.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:11.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:11.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:11.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:11.221][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2024-03-02 16:06:11.222][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:11.224][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2024-03-02 16:06:11.226][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:11.227][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:11.229][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:11.230][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:11.231][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:11.232][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:11.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:11.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:11.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:11.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:11.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:11.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:11.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:11.249][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2024-03-02 16:06:11.252][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:11.253][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:11.255][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2024-03-02 16:06:11.625][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2024-03-02 16:06:11.998][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:12.001][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2024-03-02 16:06:12.005][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2024-03-02 16:06:12.008][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2024-03-02 16:06:12.010][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:12.012][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:12.013][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:12.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:12.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:12.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:12.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:12.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:12.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:12.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:12.029][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:12.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:12.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.033][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:12.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:12.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.039][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:12.041][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:12.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.043][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:12.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:12.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.049][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:12.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:12.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.053][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:12.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:12.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:12.061][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:12.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.063][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:12.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:12.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.070][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:12.077][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:12.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.087][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:12.088][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:12.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.092][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:12.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:12.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.097][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:12.098][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:12.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:12.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:12.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.107][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:12.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:12.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.111][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:12.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:12.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.117][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:12.119][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:12.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.121][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.122][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:12.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:12.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.127][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:12.128][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:12.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.131][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:12.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:12.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:12.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:12.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:12.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:12.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:12.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:12.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:12.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:12.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:12.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:12.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:12.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:12.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:12.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:12.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:12.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:12.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:12.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:12.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:12.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:12.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:12.186][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2024-03-02 16:06:12.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:12.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:12.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:12.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:12.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:12.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:12.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:12.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:12.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:12.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:12.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:12.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:12.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:12.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:12.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:12.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:12.215][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2024-03-02 16:06:12.216][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:12.218][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2024-03-02 16:06:12.220][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:12.221][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:12.222][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:12.224][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:12.225][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:12.226][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:12.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:12.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:12.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:12.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:12.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:12.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:12.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:12.242][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2024-03-02 16:06:12.246][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:12.247][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:12.249][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2024-03-02 16:06:12.624][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2024-03-02 16:06:12.995][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:12.997][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2024-03-02 16:06:13.001][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2024-03-02 16:06:13.005][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2024-03-02 16:06:13.007][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:13.008][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:13.010][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:13.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:13.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:13.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:13.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:13.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:13.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:13.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:13.026][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:13.027][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:13.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.029][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:13.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:13.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.036][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:13.037][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:13.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.039][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.041][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:13.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:13.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.046][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:13.047][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:13.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:13.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:13.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.056][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:13.057][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:13.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.059][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:13.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:13.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.065][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.066][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:13.067][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:13.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.070][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.071][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:13.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:13.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.075][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.076][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:13.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:13.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.081][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:13.082][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:13.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:13.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:13.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.091][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:13.092][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:13.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.095][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:13.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:13.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.101][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:13.103][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:13.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.105][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.106][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:13.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:13.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.111][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:13.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:13.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.115][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:13.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:13.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:13.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:13.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:13.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:13.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:13.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:13.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:13.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:13.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:13.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:13.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:13.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:13.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:13.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:13.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:13.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:13.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:13.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:13.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:13.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:13.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:13.172][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2024-03-02 16:06:13.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:13.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:13.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:13.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:13.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:13.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:13.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:13.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:13.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:13.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:13.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:13.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:13.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:13.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:13.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:13.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:13.200][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2024-03-02 16:06:13.202][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:13.204][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2024-03-02 16:06:13.205][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:13.206][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:13.217][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:13.219][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:13.220][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:13.221][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:13.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:13.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:13.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:13.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:13.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:13.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:13.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:13.237][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2024-03-02 16:06:13.241][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:13.242][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:13.244][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2024-03-02 16:06:13.614][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2024-03-02 16:06:13.983][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:13.985][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2024-03-02 16:06:13.990][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2024-03-02 16:06:13.993][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2024-03-02 16:06:13.995][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:13.996][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:13.998][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:13.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:14.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:14.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:14.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:14.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:14.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:14.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:14.014][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:14.015][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:14.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.017][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:14.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:14.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.024][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:14.025][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:14.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.027][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.029][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:14.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:14.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.034][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:14.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:14.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.037][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:14.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:14.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.044][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:14.045][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:14.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.047][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:14.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:14.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.054][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:14.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:14.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:14.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:14.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.064][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:14.066][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:14.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.069][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:14.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:14.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.073][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.075][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:14.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:14.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:14.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:14.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.083][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:14.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:14.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.090][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:14.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:14.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:14.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:14.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.100][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:14.102][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:14.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.104][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.106][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:14.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:14.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.111][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:14.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:14.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.114][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:14.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:14.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:14.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:14.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:14.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:14.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:14.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:14.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:14.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:14.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:14.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:14.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:14.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:14.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:14.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:14.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:14.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:14.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:14.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:14.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:14.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:14.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:14.170][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2024-03-02 16:06:14.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:14.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:14.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:14.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:14.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:14.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:14.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:14.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:14.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:14.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:14.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:14.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:14.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:14.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:14.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:14.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:14.199][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2024-03-02 16:06:14.201][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:14.203][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2024-03-02 16:06:14.204][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:14.206][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:14.207][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:14.208][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:14.210][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:14.211][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:14.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:14.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:14.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:14.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:14.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:14.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:14.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:14.228][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2024-03-02 16:06:14.232][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:14.233][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:14.235][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2024-03-02 16:06:14.604][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2024-03-02 16:06:14.975][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:14.978][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2024-03-02 16:06:14.982][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2024-03-02 16:06:14.985][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2024-03-02 16:06:14.987][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:14.988][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:14.990][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:14.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:14.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:14.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:15.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:15.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:15.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:15.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:15.005][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:15.007][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:15.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.009][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:15.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:15.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.015][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:15.017][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:15.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.019][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.021][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:15.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.026][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:15.027][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:15.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.029][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:15.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:15.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.036][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:15.037][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:15.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.039][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:15.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:15.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.046][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:15.047][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:15.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:15.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:15.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.056][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:15.057][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:15.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.059][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.061][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:15.062][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:15.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.065][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.066][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:15.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:15.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:15.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:15.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.081][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:15.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:15.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.093][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:15.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:15.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.097][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:15.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:15.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.104][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:15.105][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:15.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.107][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:15.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:15.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.114][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:15.115][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:15.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.117][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:15.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:15.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:15.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:15.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:15.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:15.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:15.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:15.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:15.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:15.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:15.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:15.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:15.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:15.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:15.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:15.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:15.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:15.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:15.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:15.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:15.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:15.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:15.172][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2024-03-02 16:06:15.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:15.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:15.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:15.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:15.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:15.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:15.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:15.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:15.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:15.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:15.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:15.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:15.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:15.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:15.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:15.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:15.200][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2024-03-02 16:06:15.202][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:15.204][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2024-03-02 16:06:15.205][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:15.206][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:15.208][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:15.209][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:15.210][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:15.211][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:15.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:15.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:15.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:15.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:15.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:15.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:15.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:15.228][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2024-03-02 16:06:15.231][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:15.232][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:15.234][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2024-03-02 16:06:15.607][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2024-03-02 16:06:15.981][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:15.983][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2024-03-02 16:06:15.987][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2024-03-02 16:06:15.990][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2024-03-02 16:06:15.992][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:15.993][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:15.995][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:15.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:15.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:15.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:16.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:16.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:16.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:16.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:16.011][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:16.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:16.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.014][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:16.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:16.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.021][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:16.022][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:16.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.024][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.026][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:16.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:16.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.031][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:16.032][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:16.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.034][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:16.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:16.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:16.042][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:16.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.044][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:16.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:16.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.050][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:16.052][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:16.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.054][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:16.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:16.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.060][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:16.062][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:16.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.064][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.065][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:16.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:16.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.069][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.070][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:16.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:16.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.075][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:16.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:16.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.079][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:16.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:16.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.085][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:16.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:16.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.089][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:16.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:16.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.095][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:16.096][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:16.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.099][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:16.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:16.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:16.106][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:16.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.108][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:16.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:16.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:16.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:16.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:16.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:16.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:16.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:16.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:16.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:16.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:16.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:16.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:16.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:16.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:16.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:16.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:16.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:16.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:16.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:16.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:16.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:16.163][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2024-03-02 16:06:16.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:16.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:16.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:16.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:16.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:16.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:16.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:16.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:16.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:16.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:16.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:16.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:16.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:16.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:16.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:16.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:16.191][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2024-03-02 16:06:16.192][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:16.194][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2024-03-02 16:06:16.196][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:16.197][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:16.198][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:16.200][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:16.201][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:16.202][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:16.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:16.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:16.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:16.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:16.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:16.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:16.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:16.232][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2024-03-02 16:06:16.236][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:16.237][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:16.239][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2024-03-02 16:06:16.615][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2024-03-02 16:06:16.985][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:16.988][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2024-03-02 16:06:16.992][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2024-03-02 16:06:16.996][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2024-03-02 16:06:16.997][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:16.999][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:17.000][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:17.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:17.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:17.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:17.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:17.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:17.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:17.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:17.016][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:17.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:17.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.019][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:17.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:17.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.026][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:17.027][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:17.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.029][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.036][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:17.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:17.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.039][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:17.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:17.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:17.047][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:17.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:17.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:17.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:17.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.059][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:17.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.065][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:17.066][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:17.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.069][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.070][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:17.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:17.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.074][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.075][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:17.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:17.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:17.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:17.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.083][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:17.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:17.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.090][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:17.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:17.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:17.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:17.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.100][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:17.101][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:17.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.104][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.105][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:17.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:17.111][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:17.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.113][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:17.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:17.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:17.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:17.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:17.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:17.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:17.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:17.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:17.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:17.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:17.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:17.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:17.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:17.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:17.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:17.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:17.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:17.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:17.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:17.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:17.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:17.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:17.168][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2024-03-02 16:06:17.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:17.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:17.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:17.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:17.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:17.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:17.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:17.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:17.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:17.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:17.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:17.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:17.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:17.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:17.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:17.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:17.197][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2024-03-02 16:06:17.198][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:17.200][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2024-03-02 16:06:17.202][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:17.203][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:17.204][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:17.206][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:17.207][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:17.208][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:17.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:17.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:17.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:17.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:17.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:17.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:17.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:17.224][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2024-03-02 16:06:17.228][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:17.229][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:17.231][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2024-03-02 16:06:17.604][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2024-03-02 16:06:17.987][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:17.990][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2024-03-02 16:06:17.994][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2024-03-02 16:06:17.997][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2024-03-02 16:06:17.999][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:18.000][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:18.002][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:18.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:18.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:18.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:18.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:18.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:18.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:18.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:18.018][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:18.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:18.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.022][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:18.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:18.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.028][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:18.029][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:18.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.032][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:18.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.038][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:18.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:18.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.042][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:18.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:18.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.048][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:18.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:18.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.051][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:18.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:18.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:18.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.061][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:18.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:18.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:18.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:18.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.073][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:18.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:18.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.078][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:18.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:18.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:18.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:18.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.086][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:18.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:18.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.093][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:18.094][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:18.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.108][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:18.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:18.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.115][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:18.117][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:18.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.119][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:18.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:18.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.126][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:18.127][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:18.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.129][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:18.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:18.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:18.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:18.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:18.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:18.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:18.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:18.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:18.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:18.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:18.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:18.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:18.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:18.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:18.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:18.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:18.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:18.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:18.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:18.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:18.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:18.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:18.184][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2024-03-02 16:06:18.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:18.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:18.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:18.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:18.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:18.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:18.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:18.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:18.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:18.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:18.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:18.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:18.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:18.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:18.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:18.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:18.212][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2024-03-02 16:06:18.213][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:18.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2024-03-02 16:06:18.217][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:18.218][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:18.219][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:18.221][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:18.222][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:18.223][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:18.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:18.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:18.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:18.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:18.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:18.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:18.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:18.239][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2024-03-02 16:06:18.243][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:18.244][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:18.246][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2024-03-02 16:06:18.617][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2024-03-02 16:06:18.986][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:18.988][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2024-03-02 16:06:18.993][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2024-03-02 16:06:18.996][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2024-03-02 16:06:18.998][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:18.999][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:19.001][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:19.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:19.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:19.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:19.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:19.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:19.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:19.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:19.017][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:19.018][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:19.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.021][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:19.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:19.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.027][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:19.028][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:19.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.032][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:19.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:19.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.037][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:19.038][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:19.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.041][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:19.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:19.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.047][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:19.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:19.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.051][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:19.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:19.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:19.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:19.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.061][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:19.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:19.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.067][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:19.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:19.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.072][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:19.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:19.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:19.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:19.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:19.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:19.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.086][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:19.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:19.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.093][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:19.094][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:19.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:19.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:19.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.103][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:19.104][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:19.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.107][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:19.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:19.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.113][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:19.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:19.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.117][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:19.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:19.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:19.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:19.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:19.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:19.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:19.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:19.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:19.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:19.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:19.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:19.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:19.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:19.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:19.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:19.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:19.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:19.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:19.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:19.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:19.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:19.172][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2024-03-02 16:06:19.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:19.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:19.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:19.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:19.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:19.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:19.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:19.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:19.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:19.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:19.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:19.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:19.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:19.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:19.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:19.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:19.202][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2024-03-02 16:06:19.203][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:19.205][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2024-03-02 16:06:19.206][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:19.208][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:19.209][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:19.210][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:19.211][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:19.213][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:19.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:19.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:19.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:19.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:19.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:19.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:19.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:19.236][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2024-03-02 16:06:19.243][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:19.244][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:19.246][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2024-03-02 16:06:19.615][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2024-03-02 16:06:19.993][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:19.995][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2024-03-02 16:06:19.999][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2024-03-02 16:06:20.002][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2024-03-02 16:06:20.004][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:20.006][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:20.007][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:20.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:20.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:20.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:20.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:20.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:20.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:20.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:20.023][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:20.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:20.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.027][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:20.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:20.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.033][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:20.034][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:20.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.037][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:20.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:20.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.043][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:20.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:20.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.047][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:20.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.053][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:20.054][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:20.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.057][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:20.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:20.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.063][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:20.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:20.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.066][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:20.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:20.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.073][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:20.074][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:20.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.078][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:20.079][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:20.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.081][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.083][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:20.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:20.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:20.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:20.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:20.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.098][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:20.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:20.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:20.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:20.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.108][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:20.109][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:20.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.112][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:20.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:20.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.118][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:20.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:20.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.122][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:20.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:20.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:20.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:20.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:20.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:20.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:20.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:20.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:20.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:20.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:20.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:20.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:20.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:20.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:20.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:20.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:20.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:20.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:20.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:20.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:20.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:20.177][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2024-03-02 16:06:20.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:20.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:20.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:20.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:20.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:20.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:20.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:20.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:20.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:20.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:20.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:20.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:20.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:20.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:20.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:20.206][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2024-03-02 16:06:20.207][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:20.209][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2024-03-02 16:06:20.210][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:20.212][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:20.213][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:20.214][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:20.216][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:20.217][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:20.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:20.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:20.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:20.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:20.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:20.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:20.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:20.233][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2024-03-02 16:06:20.236][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:20.237][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:20.239][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2024-03-02 16:06:20.612][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2024-03-02 16:06:20.991][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:20.993][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2024-03-02 16:06:20.997][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2024-03-02 16:06:21.000][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2024-03-02 16:06:21.003][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:21.004][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:21.006][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:21.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:21.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:21.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:21.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:21.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:21.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:21.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:21.022][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:21.023][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:21.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.025][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:21.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:21.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.033][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:21.034][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:21.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.037][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:21.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:21.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.044][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:21.045][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:21.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.048][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:21.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:21.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.055][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:21.056][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:21.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:21.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:21.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:21.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:21.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:21.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:21.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.075][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:21.076][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:21.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.078][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.080][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:21.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:21.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.083][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.085][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:21.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:21.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:21.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:21.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:21.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:21.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.100][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:21.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:21.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.103][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:21.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:21.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.110][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:21.111][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:21.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.114][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:21.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:21.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.132][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:21.134][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:21.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.136][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:21.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:21.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:21.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:21.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:21.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:21.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:21.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:21.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:21.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:21.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:21.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:21.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:21.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:21.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:21.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:21.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:21.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:21.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:21.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:21.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:21.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:21.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:21.191][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2024-03-02 16:06:21.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:21.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:21.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:21.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:21.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:21.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:21.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:21.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:21.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:21.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:21.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:21.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:21.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:21.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:21.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:21.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:21.219][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2024-03-02 16:06:21.220][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:21.222][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2024-03-02 16:06:21.224][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:21.225][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:21.226][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:21.228][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:21.229][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:21.230][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:21.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:21.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:21.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:21.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:21.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:21.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:21.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:21.246][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2024-03-02 16:06:21.249][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:21.251][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:21.252][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2024-03-02 16:06:21.625][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2024-03-02 16:06:22.084][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:22.086][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2024-03-02 16:06:22.091][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2024-03-02 16:06:22.094][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2024-03-02 16:06:22.096][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:22.097][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:22.099][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:22.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:22.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:22.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:22.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:22.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:22.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:22.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:22.115][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:22.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:22.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.118][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:22.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:22.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.125][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:22.126][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:22.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.128][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.130][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:22.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:22.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.135][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:22.136][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:22.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.138][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:22.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:22.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.145][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:22.146][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:22.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.149][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:22.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:22.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.155][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:22.156][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:22.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.159][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:22.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:22.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.165][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:22.166][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:22.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.169][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.170][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:22.171][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:22.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.174][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.175][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:22.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:22.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.180][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:22.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:22.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.184][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:22.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:22.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.190][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:22.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:22.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.194][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:22.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:22.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.201][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:22.202][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:22.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.204][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.206][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:22.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:22.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.211][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:22.212][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:22.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.214][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:22.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:22.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:22.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:22.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:22.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:22.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:22.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:22.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:22.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:22.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:22.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:22.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:22.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:22.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:22.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:22.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:22.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:22.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:22.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:22.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:22.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:22.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:22.269][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2024-03-02 16:06:22.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:22.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:22.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:22.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:22.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:22.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:22.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:22.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:22.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:22.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:22.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:22.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:22.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:22.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:22.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:22.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:22.298][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2024-03-02 16:06:22.299][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:22.301][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2024-03-02 16:06:22.303][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:22.304][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:22.305][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:22.307][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:22.308][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:22.309][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:22.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:22.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:22.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:22.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:22.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:22.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:22.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:22.326][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2024-03-02 16:06:22.329][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:22.330][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:22.332][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2024-03-02 16:06:22.704][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2024-03-02 16:06:23.078][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:23.092][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2024-03-02 16:06:23.097][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2024-03-02 16:06:23.100][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2024-03-02 16:06:23.102][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:23.104][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:23.105][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:23.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:23.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:23.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:23.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:23.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:23.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:23.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:23.122][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:23.124][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:23.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.126][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:23.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:23.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.132][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:23.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:23.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.136][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.137][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:23.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:23.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.142][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:23.144][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:23.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.146][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:23.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:23.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:23.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:23.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.156][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:23.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:23.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.162][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:23.164][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:23.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:23.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:23.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.172][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:23.174][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:23.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.176][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.177][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:23.179][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:23.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.181][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.182][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:23.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:23.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:23.189][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:23.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.191][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:23.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:23.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.198][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:23.199][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:23.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:23.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:23.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.208][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:23.209][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:23.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.211][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.213][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:23.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:23.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:23.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:23.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.221][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:23.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:23.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:23.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:23.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:23.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:23.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:23.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:23.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:23.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:23.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:23.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:23.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:23.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:23.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:23.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:23.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:23.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:23.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:23.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:23.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:23.277][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2024-03-02 16:06:23.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:23.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:23.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:23.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:23.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:23.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:23.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:23.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:23.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:23.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:23.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:23.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:23.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:23.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:23.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:23.306][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2024-03-02 16:06:23.307][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:23.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2024-03-02 16:06:23.311][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:23.312][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:23.313][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:23.314][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:23.316][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:23.317][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:23.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:23.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:23.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:23.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:23.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:23.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:23.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:23.333][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2024-03-02 16:06:23.336][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:23.338][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:23.339][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2024-03-02 16:06:23.716][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2024-03-02 16:06:24.091][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:24.094][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2024-03-02 16:06:24.098][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2024-03-02 16:06:24.101][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2024-03-02 16:06:24.103][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:24.104][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:24.106][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:24.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:24.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:24.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:24.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:24.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:24.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:24.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:24.122][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:24.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:24.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.126][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:24.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:24.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.132][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:24.133][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:24.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.136][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.137][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:24.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:24.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.142][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:24.144][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:24.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.146][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.148][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:24.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:24.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.153][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:24.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:24.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.156][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:24.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:24.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.163][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:24.164][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:24.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:24.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:24.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.173][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:24.174][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:24.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.176][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.178][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:24.179][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:24.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.181][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.183][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:24.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:24.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.188][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:24.189][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:24.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.191][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:24.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:24.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.198][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:24.199][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:24.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:24.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:24.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.208][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:24.209][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:24.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.212][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.213][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:24.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:24.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:24.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:24.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.222][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:24.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:24.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:24.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:24.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:24.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:24.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:24.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:24.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:24.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:24.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:24.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:24.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:24.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:24.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:24.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:24.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:24.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:24.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:24.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:24.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:24.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:24.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:24.287][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2024-03-02 16:06:24.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:24.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:24.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:24.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:24.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:24.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:24.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:24.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:24.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:24.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:24.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:24.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:24.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:24.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:24.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:24.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:24.316][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2024-03-02 16:06:24.317][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:24.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2024-03-02 16:06:24.320][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:24.322][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:24.323][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:24.324][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:24.326][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:24.327][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:24.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:24.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:24.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:24.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:24.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:24.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:24.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:24.343][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2024-03-02 16:06:24.346][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:24.348][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:24.349][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2024-03-02 16:06:24.726][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2024-03-02 16:06:25.097][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:25.100][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2024-03-02 16:06:25.104][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2024-03-02 16:06:25.108][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2024-03-02 16:06:25.110][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:25.111][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:25.113][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:25.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:25.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:25.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:25.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:25.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:25.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:25.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:25.129][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:25.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:25.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.133][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:25.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:25.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.139][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:25.141][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:25.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.143][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.144][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:25.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:25.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.149][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:25.151][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:25.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.153][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.155][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:25.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:25.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:25.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:25.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.163][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:25.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:25.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:25.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:25.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.174][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:25.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:25.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.180][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:25.182][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:25.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.184][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.185][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:25.187][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:25.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.189][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.191][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:25.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:25.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.196][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:25.197][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:25.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.200][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:25.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.206][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:25.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:25.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.210][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:25.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:25.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.217][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:25.219][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:25.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.221][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.223][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:25.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:25.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.229][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:25.230][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:25.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.232][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:25.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:25.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:25.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:25.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:25.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:25.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:25.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:25.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:25.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:25.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:25.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:25.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:25.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:25.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:25.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:25.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:25.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:25.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:25.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:25.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:25.287][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2024-03-02 16:06:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:25.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:25.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:25.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:25.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:25.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:25.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:25.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:25.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:25.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:25.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:25.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:25.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:25.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:25.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:25.315][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2024-03-02 16:06:25.317][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:25.318][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2024-03-02 16:06:25.320][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:25.321][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:25.323][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:25.324][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:25.325][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:25.326][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:25.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:25.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:25.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:25.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:25.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:25.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:25.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:25.342][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2024-03-02 16:06:25.346][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:25.347][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:25.349][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2024-03-02 16:06:25.722][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2024-03-02 16:06:26.095][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:26.098][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2024-03-02 16:06:26.102][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2024-03-02 16:06:26.105][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2024-03-02 16:06:26.107][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:26.121][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:26.122][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:26.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:26.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:26.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:26.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:26.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:26.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:26.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:26.139][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:26.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:26.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.142][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:26.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:26.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.149][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:26.150][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:26.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.152][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.154][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:26.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:26.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.158][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:26.160][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:26.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.162][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:26.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:26.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:26.170][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:26.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.172][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:26.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:26.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:26.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:26.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.182][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:26.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:26.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.188][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:26.189][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:26.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.192][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.193][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:26.194][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:26.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.197][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.198][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:26.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:26.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:26.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:26.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.206][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:26.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:26.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.213][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:26.214][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:26.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.216][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:26.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:26.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.223][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:26.224][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:26.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.227][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.228][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:26.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:26.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.233][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:26.234][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:26.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.237][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:26.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:26.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:26.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:26.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:26.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:26.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:26.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:26.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:26.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:26.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:26.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:26.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:26.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:26.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:26.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:26.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:26.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:26.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:26.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:26.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:26.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:26.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:26.292][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2024-03-02 16:06:26.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:26.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:26.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:26.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:26.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:26.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:26.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:26.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:26.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:26.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:26.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:26.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:26.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:26.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:26.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:26.320][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2024-03-02 16:06:26.322][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:26.323][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2024-03-02 16:06:26.325][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:26.326][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:26.328][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:26.329][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:26.330][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:26.331][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:26.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:26.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:26.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:26.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:26.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:26.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:26.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:26.348][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2024-03-02 16:06:26.351][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:26.352][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:26.354][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2024-03-02 16:06:26.729][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2024-03-02 16:06:27.105][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:27.108][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2024-03-02 16:06:27.112][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2024-03-02 16:06:27.116][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2024-03-02 16:06:27.118][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:27.119][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:27.120][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:27.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:27.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:27.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:27.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:27.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:27.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:27.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:27.136][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:27.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:27.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.140][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:27.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:27.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.146][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:27.148][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:27.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.150][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:27.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:27.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.156][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:27.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:27.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.160][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:27.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:27.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.166][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:27.168][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:27.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.170][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:27.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:27.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.176][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:27.177][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:27.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.180][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:27.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:27.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.186][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:27.187][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:27.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.190][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.191][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:27.192][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:27.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.195][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.196][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:27.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:27.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.201][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:27.202][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:27.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.205][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:27.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:27.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.211][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:27.212][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:27.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.215][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:27.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:27.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.221][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:27.223][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:27.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.225][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:27.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:27.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.231][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:27.233][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:27.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.235][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.236][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:27.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:27.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:27.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:27.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:27.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:27.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:27.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:27.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:27.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:27.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:27.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:27.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:27.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:27.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:27.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:27.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:27.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:27.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:27.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:27.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:27.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:27.301][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2024-03-02 16:06:27.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:27.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:27.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:27.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:27.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:27.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:27.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:27.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:27.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:27.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:27.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:27.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:27.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:27.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:27.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:27.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:27.329][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2024-03-02 16:06:27.331][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:27.333][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2024-03-02 16:06:27.334][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:27.335][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:27.337][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:27.338][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:27.339][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:27.340][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:27.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:27.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:27.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:27.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:27.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:27.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:27.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:27.356][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2024-03-02 16:06:27.360][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:27.361][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:27.363][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2024-03-02 16:06:27.736][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2024-03-02 16:06:28.113][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:28.115][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2024-03-02 16:06:28.120][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2024-03-02 16:06:28.123][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2024-03-02 16:06:28.125][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:28.126][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:28.128][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:28.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:28.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:28.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:28.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:28.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:28.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:28.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:28.144][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:28.146][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:28.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.148][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:28.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:28.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.154][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:28.156][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:28.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.158][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.160][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:28.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:28.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.164][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:28.166][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:28.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.168][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:28.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:28.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:28.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:28.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.178][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:28.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:28.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.185][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:28.186][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:28.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.188][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:28.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:28.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:28.196][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:28.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.198][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.200][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:28.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:28.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.204][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:28.206][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:28.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.208][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.209][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:28.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:28.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.214][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:28.216][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:28.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.218][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:28.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:28.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.224][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:28.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:28.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.228][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:28.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:28.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.235][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:28.236][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:28.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.238][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:28.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:28.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.245][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:28.246][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:28.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.249][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:28.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:28.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:28.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:28.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:28.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:28.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:28.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:28.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:28.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:28.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:28.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:28.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:28.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:28.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:28.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:28.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:28.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:28.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:28.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:28.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:28.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:28.305][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2024-03-02 16:06:28.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:28.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:28.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:28.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:28.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:28.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:28.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:28.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:28.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:28.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:28.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:28.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:28.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:28.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:28.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:28.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:28.334][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2024-03-02 16:06:28.335][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 16:06:28.337][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2024-03-02 16:06:28.339][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 16:06:28.340][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 16:06:28.341][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 16:06:28.342][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-02 16:06:28.344][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 16:06:28.345][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 16:06:28.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:28.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:28.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:28.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:28.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:28.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:28.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:28.361][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2024-03-02 16:06:28.364][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 16:06:28.365][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 16:06:28.367][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2024-03-02 16:06:28.736][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2024-03-02 16:06:29.111][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 16:06:29.113][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2024-03-02 16:06:29.117][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2024-03-02 16:06:29.121][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2024-03-02 16:06:29.122][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 16:06:29.124][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-02 16:06:29.125][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-02 16:06:29.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.154][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:29.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:29.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.158][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:29.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:29.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.164][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:29.165][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:29.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.168][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.169][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:29.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:29.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.174][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:29.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:29.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.177][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:29.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:29.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.184][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:29.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:29.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.187][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:29.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:29.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:29.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:29.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.197][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:29.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:29.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.203][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:29.205][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:29.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.207][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.208][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:29.210][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:29.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.212][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.213][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-02 16:06:29.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:29.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.218][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.222][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.228][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:29.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:29.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.232][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:29.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:29.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.238][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:29.240][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:29.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.242][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.243][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-02 16:06:29.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:29.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.248][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:29.249][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:29.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.252][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:29.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:29.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:29.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:29.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:29.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:29.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:29.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:29.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:29.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:29.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:29.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:29.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:29.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:29.307][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2024-03-02 16:06:29.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:29.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:29.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:29.378][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:29.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.404][private$selectFields]
biodb.TRACE[2024-03-02 16:06:29.405][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:29.406][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:29.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.412][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.417][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.419][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.424][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.425][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:29.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.441][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:06:29.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.466][private$selectFields]
biodb.TRACE[2024-03-02 16:06:29.467][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:29.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:29.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.474][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.479][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.480][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.482][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.486][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.488][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:29.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.504][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-03-02 16:06:29.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.536][private$selectFields]
biodb.TRACE[2024-03-02 16:06:29.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:29.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:29.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.544][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.545][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.549][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.550][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.551][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.556][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.557][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:29.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.573][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-03-02 16:06:29.574][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:29.576][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:29.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:29.592][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:29.596][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:29.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-03-02 16:06:29.599][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:29.601][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-03-02 16:06:29.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:29.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:29.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:29.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:29.719][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:29.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.744][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.745][private$selectFields]
biodb.TRACE[2024-03-02 16:06:29.746][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:29.747][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:29.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.750][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.751][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.753][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.758][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.759][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.761][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.762][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.765][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.767][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:29.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.783][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-03-02 16:06:29.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.806][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.808][private$selectFields]
biodb.TRACE[2024-03-02 16:06:29.809][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:29.810][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:29.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.816][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.821][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.823][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.828][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.829][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:29.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-03-02 16:06:29.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.870][private$selectFields]
biodb.TRACE[2024-03-02 16:06:29.871][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:29.873][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:29.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.879][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.884][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.886][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:29.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.891][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.892][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:29.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.916][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-03-02 16:06:29.917][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:29.919][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:29.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:29.958][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:29.962][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:29.963][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-03-02 16:06:29.965][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:29.967][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-03-02 16:06:29.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:29.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:29.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:29.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:29.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:29.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:29.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:29.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:29.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:29.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:29.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.169][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:30.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.195][private$selectFields]
biodb.TRACE[2024-03-02 16:06:30.196][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:30.197][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:30.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.203][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.208][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.210][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.215][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.216][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.232][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-03-02 16:06:30.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.257][private$selectFields]
biodb.TRACE[2024-03-02 16:06:30.258][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:30.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:30.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.265][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.270][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.271][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.273][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.278][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.279][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:30.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.304][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-03-02 16:06:30.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.328][private$selectFields]
biodb.TRACE[2024-03-02 16:06:30.329][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:30.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:30.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.336][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.341][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.343][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.348][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.349][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:30.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.365][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2024-03-02 16:06:30.366][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:30.367][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:30.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:30.384][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:30.388][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:30.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2024-03-02 16:06:30.391][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:30.393][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2024-03-02 16:06:30.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.509][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:30.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.535][private$selectFields]
biodb.TRACE[2024-03-02 16:06:30.536][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:30.537][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:30.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.543][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.548][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.550][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.555][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.556][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:30.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.572][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2024-03-02 16:06:30.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.597][private$selectFields]
biodb.TRACE[2024-03-02 16:06:30.598][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:30.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:30.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.605][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.610][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.612][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.617][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.618][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:30.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.634][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:06:30.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.658][private$selectFields]
biodb.TRACE[2024-03-02 16:06:30.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:30.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:30.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.666][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.679][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.680][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.681][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.686][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.688][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:30.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.704][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-03-02 16:06:30.705][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:30.706][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:30.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:30.723][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:30.727][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:30.728][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2024-03-02 16:06:30.730][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:30.731][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2024-03-02 16:06:30.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:30.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:30.870][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:30.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.895][private$selectFields]
biodb.TRACE[2024-03-02 16:06:30.896][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:30.897][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:30.898][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.903][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.908][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.910][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.915][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.916][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:30.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.932][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2024-03-02 16:06:30.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:30.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:30.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:30.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:30.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:30.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.955][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.956][private$selectFields]
biodb.TRACE[2024-03-02 16:06:30.957][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:30.959][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:30.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.964][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.969][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.971][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:30.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.976][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.977][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:30.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:30.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:30.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:30.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2024-03-02 16:06:30.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:30.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:30.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.018][private$selectFields]
biodb.TRACE[2024-03-02 16:06:31.019][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:31.020][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:31.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.026][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.033][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.038][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.039][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:31.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2024-03-02 16:06:31.063][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:31.064][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:31.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:31.108][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:31.112][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:31.113][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-03-02 16:06:31.115][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:31.116][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-03-02 16:06:31.120][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:31.124][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:31.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-03-02 16:06:31.127][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:31.128][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-03-02 16:06:31.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:31.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:31.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:31.213][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:31.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.238][private$selectFields]
biodb.TRACE[2024-03-02 16:06:31.239][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:31.241][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:31.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.247][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.252][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.254][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.264][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.266][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:31.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.282][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-03-02 16:06:31.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.307][private$selectFields]
biodb.TRACE[2024-03-02 16:06:31.308][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:31.309][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:31.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.315][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.320][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.321][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.322][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.323][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.327][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.328][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:31.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.345][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:06:31.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.369][private$selectFields]
biodb.TRACE[2024-03-02 16:06:31.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:31.372][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:31.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.377][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.382][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.385][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.389][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.390][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:31.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.406][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-03-02 16:06:31.408][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:31.409][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:31.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:31.426][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:31.430][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:31.431][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-03-02 16:06:31.433][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:31.434][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-03-02 16:06:31.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:31.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:31.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:31.527][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:31.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.551][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.552][private$selectFields]
biodb.TRACE[2024-03-02 16:06:31.553][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:31.554][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:31.556][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.560][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.565][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.567][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.572][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.573][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:31.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:06:31.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.615][private$selectFields]
biodb.TRACE[2024-03-02 16:06:31.616][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:31.617][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:31.618][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.623][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.629][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.631][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.636][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.637][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:31.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.653][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-03-02 16:06:31.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.679][private$selectFields]
biodb.TRACE[2024-03-02 16:06:31.681][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:31.682][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:31.683][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.688][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.693][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.694][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.695][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.700][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.701][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:31.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.717][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-03-02 16:06:31.718][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:31.719][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:31.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:31.736][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:31.740][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:31.742][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-03-02 16:06:31.744][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:31.745][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-03-02 16:06:31.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:31.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:31.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:31.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:31.838][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:31.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.866][private$selectFields]
biodb.TRACE[2024-03-02 16:06:31.867][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:31.868][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:31.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.870][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.874][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.879][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.881][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.886][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.887][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:31.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.903][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-03-02 16:06:31.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.928][private$selectFields]
biodb.TRACE[2024-03-02 16:06:31.929][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:31.930][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:31.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.936][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.941][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.943][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.948][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.949][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:31.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.965][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-03-02 16:06:31.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:31.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:31.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:31.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:31.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:31.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:31.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:31.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.990][private$selectFields]
biodb.TRACE[2024-03-02 16:06:31.991][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:31.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:31.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:31.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:31.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:31.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:31.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.003][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.004][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.005][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.010][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.011][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:32.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.028][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-03-02 16:06:32.029][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:32.030][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:32.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:32.071][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:32.075][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:32.076][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2024-03-02 16:06:32.078][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:32.079][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2024-03-02 16:06:32.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.313][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:32.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.338][private$selectFields]
biodb.TRACE[2024-03-02 16:06:32.339][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:32.340][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:32.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.346][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.351][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.353][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.354][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.358][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.360][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:32.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.376][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-03-02 16:06:32.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.400][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.401][private$selectFields]
biodb.TRACE[2024-03-02 16:06:32.402][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:32.403][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:32.404][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.414][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.417][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.418][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.421][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.423][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:32.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.439][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-02 16:06:32.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.464][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.465][private$selectFields]
biodb.TRACE[2024-03-02 16:06:32.466][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:32.467][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:32.468][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.473][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.478][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.479][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.481][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:32.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.485][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.487][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:32.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:32.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.503][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-03-02 16:06:32.504][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:32.505][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:32.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:32.523][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:32.527][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:32.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2024-03-02 16:06:32.530][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:32.532][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2024-03-02 16:06:32.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:32.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:32.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:32.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:32.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:32.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:32.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:32.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:32.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:32.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:32.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:32.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.397][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:33.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.423][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.424][private$selectFields]
biodb.TRACE[2024-03-02 16:06:33.425][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:33.426][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:33.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.432][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.437][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.440][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.445][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.446][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:33.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.462][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-03-02 16:06:33.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.508][private$selectFields]
biodb.TRACE[2024-03-02 16:06:33.510][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:33.511][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:33.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.517][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.523][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.524][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.525][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.532][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.533][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:33.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-03-02 16:06:33.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.575][private$selectFields]
biodb.TRACE[2024-03-02 16:06:33.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:33.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:33.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.583][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.588][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.589][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.591][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.595][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.597][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:33.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.613][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-03-02 16:06:33.614][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:33.615][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:33.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:33.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:33.636][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:33.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-03-02 16:06:33.639][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:33.641][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-03-02 16:06:33.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:33.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:33.759][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:33.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.785][private$selectFields]
biodb.TRACE[2024-03-02 16:06:33.786][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:33.787][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:33.788][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.793][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.796][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.798][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.808][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.813][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.814][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:33.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.831][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-03-02 16:06:33.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.855][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.856][private$selectFields]
biodb.TRACE[2024-03-02 16:06:33.857][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:33.858][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:33.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.864][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.869][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.871][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.876][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.877][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:33.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.893][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-03-02 16:06:33.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:33.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:33.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:33.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:33.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:33.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:33.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:33.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.917][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.918][private$selectFields]
biodb.TRACE[2024-03-02 16:06:33.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:33.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:33.922][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.926][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.931][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.934][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-02 16:06:33.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.939][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.940][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-02 16:06:33.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:33.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-03-02 16:06:33.957][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:33.958][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 16:06:33.981][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:06:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:06:33.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.986][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:06:33.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:06:33.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:33.991][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:06:33.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:06:33.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:33.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 16:06:34.000][biodb::testThat]
biodb.INFO [2024-03-02 16:06:34.001][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-03-02 16:06:34.003][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 16:06:34.004][biodb::testThat]
biodb.TRACE[2024-03-02 16:06:34.007][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:06:34.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:06:34.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.012][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:06:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:06:34.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 16:06:34.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 16:06:34.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:34.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:34.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:34.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:34.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:34.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:34.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:34.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:34.098][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:34.102][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:34.103][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-03-02 16:06:34.105][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:34.107][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-03-02 16:06:34.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:34.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:34.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:34.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:34.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:34.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:34.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:34.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:34.137][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:34.142][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:34.143][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-03-02 16:06:34.145][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:34.146][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-03-02 16:06:34.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:34.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:34.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:34.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:34.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:34.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:34.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:34.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:34.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:34.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:34.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:34.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:34.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:34.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:34.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:34.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:34.374][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:34.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:34.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:34.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:34.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:34.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:34.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:34.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:34.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:34.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:34.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:34.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:34.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.398][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:34.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:34.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:34.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.417][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:34.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:34.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:34.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:34.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:34.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:34.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.446][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:34.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:34.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.450][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:34.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:34.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.478][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:34.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:34.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:34.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:34.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:34.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:34.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:34.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.502][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:34.503][private$selectFields]
biodb.TRACE[2024-03-02 16:06:34.504][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:34.505][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:34.506][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:34.508][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:34.509][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:34.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.511][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.512][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:34.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:34.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.516][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.520][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.521][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:34.523][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:34.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.525][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.526][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:34.527][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:34.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.529][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.531][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.532][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.534][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.535][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:34.537][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:34.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.539][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.540][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.541][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.544][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.545][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.546][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.548][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.550][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.551][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.553][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.554][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:34.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:34.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.558][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.559][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:34.560][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:34.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.563][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.564][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:34.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:34.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.568][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.570][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:34.571][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:34.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.574][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.579][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.581][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:34.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:34.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.584][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.586][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:34.587][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:34.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.589][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.592][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.594][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.595][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:34.596][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:34.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.599][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.600][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.601][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.604][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.605][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.606][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.608][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.610][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.611][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.613][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.614][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:34.616][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:34.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.619][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.620][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:34.621][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:34.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.624][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.625][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:34.626][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:34.627][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:34.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:34.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.631][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.632][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:34.633][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:34.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.636][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.640][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.641][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:34.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:34.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.645][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.646][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:34.648][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:34.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.650][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.651][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.652][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.655][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.656][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.657][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.659][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.661][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.662][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.664][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.665][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.667][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.669][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.671][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:34.672][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:34.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.674][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:34.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:34.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.679][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.681][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:34.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:34.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:34.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:34.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:34.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:34.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:34.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.698][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:34.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:34.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.704][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:34.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:34.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.710][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:34.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:34.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:34.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:34.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:34.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:34.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:34.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:34.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:34.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:34.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:34.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:34.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:34.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:34.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.811][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.821][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:34.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:34.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:34.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:34.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:34.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:34.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:34.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.863][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-03-02 16:06:34.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:34.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:34.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:34.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:34.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:34.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:34.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:34.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:34.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:34.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:34.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.887][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:34.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:34.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.892][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:34.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:34.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:34.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:34.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:34.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:34.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:34.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:34.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:34.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:34.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:34.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.934][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:34.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:34.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.939][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:34.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:34.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:34.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:34.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.963][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:34.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:34.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:34.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:34.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:34.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:34.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:34.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:34.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:34.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:34.992][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:34.993][private$selectFields]
biodb.TRACE[2024-03-02 16:06:34.994][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:34.995][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:34.996][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:34.997][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:34.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.001][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.002][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.004][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.006][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.011][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.012][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.013][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.015][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.016][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.020][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.021][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.022][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.025][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.026][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.027][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.029][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.031][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.032][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.034][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.035][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.037][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.039][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.040][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.041][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.044][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.045][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.048][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.051][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.053][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.055][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:35.056][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.059][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.061][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.063][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.067][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.069][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.072][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.073][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.074][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.077][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.078][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.079][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.081][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.082][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.084][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.086][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.087][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.088][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.095][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.096][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.098][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.100][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.101][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.104][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.106][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.107][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.109][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.110][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:35.111][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:35.113][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:35.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.116][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.117][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.118][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.121][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.125][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.126][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.130][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.131][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.132][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.139][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.140][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.143][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.146][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.148][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.149][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.152][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.153][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.157][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.158][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.161][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.163][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.164][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.171][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.172][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:35.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:35.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:35.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:35.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.192][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.259][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.264][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.269][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.355][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-03-02 16:06:35.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:35.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:35.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:35.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:35.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:35.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:35.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:35.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:35.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:35.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.378][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.431][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.460][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.485][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:35.486][private$selectFields]
biodb.TRACE[2024-03-02 16:06:35.487][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:35.488][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:35.490][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:35.491][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:35.492][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.494][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.496][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.497][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.499][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.504][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.505][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.507][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.509][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.510][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.511][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.514][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.516][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.523][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.524][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.526][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.529][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.530][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.534][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.535][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.539][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.540][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.541][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.544][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.545][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.549][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.551][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.553][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.555][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:35.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.558][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.559][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.561][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.563][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.565][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.567][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.569][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.572][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.573][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.575][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.577][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.578][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.579][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.581][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.583][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.584][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:35.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.586][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.587][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.589][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.591][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.592][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.593][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.595][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.597][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.598][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.600][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.601][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.603][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.605][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.606][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.607][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.609][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.611][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:35.612][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:35.613][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:35.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.616][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.618][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.619][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.621][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.626][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.627][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.628][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.630][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.632][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.633][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.635][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.636][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.638][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.640][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.641][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.642][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.644][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.649][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.650][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.652][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.654][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.655][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.658][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.660][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.661][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.663][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.664][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:35.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:35.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:35.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:35.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.680][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.685][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.689][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:35.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:35.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:35.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:35.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:35.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:35.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:35.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:35.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.781][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.786][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.791][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:35.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:35.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:35.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:35.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:35.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.832][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-03-02 16:06:35.833][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:35.834][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:35.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:35.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:35.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:35.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:35.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:35.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:35.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:35.853][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:35.857][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:35.859][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-03-02 16:06:35.860][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:35.862][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-03-02 16:06:35.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:35.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:35.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:35.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:35.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:35.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:35.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:35.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:35.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:35.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:35.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:35.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:35.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:35.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:35.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:35.924][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:35.928][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:35.929][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-03-02 16:06:35.931][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:35.933][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-03-02 16:06:35.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:35.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:35.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:35.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:35.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:35.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:35.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:35.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:35.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:35.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:35.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:35.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:35.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:35.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:35.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:35.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:35.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:35.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:35.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:35.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:35.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:35.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:36.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:36.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:36.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:36.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:36.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:36.023][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:36.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:36.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:36.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:36.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:36.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:36.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:36.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:36.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.047][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.052][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.095][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.100][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.124][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.129][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:36.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:36.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:36.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:36.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:36.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:36.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:36.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:36.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.153][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:36.155][private$selectFields]
biodb.TRACE[2024-03-02 16:06:36.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:36.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:36.158][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:36.159][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.163][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.164][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.165][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.168][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.173][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.174][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.177][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.180][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.182][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.183][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.185][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.187][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.188][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.189][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.192][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.193][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.194][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.196][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.198][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.202][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.204][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.206][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.207][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:36.208][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:36.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.211][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:36.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:36.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.215][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.217][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.220][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.221][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.223][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.225][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.230][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.231][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.232][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.234][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.236][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.237][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.239][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.241][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.242][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.244][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.245][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.247][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.249][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.250][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.254][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.255][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.256][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.258][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.260][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.263][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.264][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:36.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:36.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.268][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.269][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:36.270][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:36.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.273][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.274][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:36.275][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:36.276][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.280][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.281][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.282][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.284][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.289][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.290][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.294][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.299][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.306][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.308][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.309][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.311][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.313][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.314][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.315][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.318][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.319][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.320][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.322][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.323][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.325][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.327][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.328][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:36.329][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:36.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.331][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.333][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:36.334][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:36.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.336][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.337][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:36.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.353][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.391][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.430][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.435][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.469][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:36.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:36.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:36.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:36.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:36.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:36.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:36.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:36.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.521][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-03-02 16:06:36.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:36.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:36.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:36.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:36.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:36.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:36.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:36.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.549][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.593][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.598][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.627][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:36.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:36.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:36.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:36.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:36.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:36.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.651][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:36.652][private$selectFields]
biodb.TRACE[2024-03-02 16:06:36.653][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:36.654][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:36.655][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:36.657][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.660][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.661][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.663][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.665][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.670][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.671][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.672][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.674][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.676][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.677][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.679][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.680][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.684][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.685][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.686][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.693][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.694][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.695][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.697][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.702][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.703][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.705][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.707][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.708][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:36.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:36.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.711][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.713][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:36.714][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:36.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.717][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.719][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.721][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.722][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.723][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.726][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.727][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.728][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.730][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.731][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.733][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.735][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.736][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.737][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.740][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.741][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.742][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.744][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.745][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.747][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.750][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.751][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.753][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.755][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.759][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.761][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.762][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.765][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.766][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:36.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:36.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.770][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.771][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:36.773][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:36.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.775][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.776][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:36.777][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:36.778][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.781][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.783][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.784][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.786][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.788][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.793][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.794][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.796][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.798][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.799][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.802][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.804][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.805][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.807][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.810][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.812][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.813][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.814][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.817][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.818][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:36.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.821][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.822][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.824][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:36.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.826][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.827][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:36.828][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:36.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.831][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.832][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:36.833][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:36.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.835][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.836][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:36.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:36.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:36.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.862][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:36.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:36.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:36.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:36.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:36.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:36.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:36.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.962][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.974][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.979][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:36.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:36.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:36.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:36.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.018][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.023][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:37.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:37.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:37.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:37.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:37.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:37.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:37.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.047][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:37.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:37.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:37.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:37.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.064][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-03-02 16:06:37.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:37.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:37.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:37.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:37.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:37.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:37.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:37.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:37.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:37.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:37.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:37.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:37.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:37.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:37.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:37.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.138][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:37.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.143][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:37.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:37.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.166][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.171][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:37.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:37.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:37.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:37.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:37.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:37.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:37.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:37.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.194][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:37.195][private$selectFields]
biodb.TRACE[2024-03-02 16:06:37.196][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:37.198][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:37.199][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:37.200][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:37.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:37.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.203][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.204][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:37.206][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:37.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.208][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.210][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.213][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.214][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:37.215][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:37.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.217][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.218][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:37.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:37.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.222][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.223][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.224][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.226][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.227][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:37.229][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:37.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.232][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.233][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.236][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.237][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.238][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.241][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.242][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.243][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.245][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.247][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:37.248][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:37.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.250][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.251][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:37.252][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:37.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.255][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.256][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:37.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:37.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.259][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.260][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:37.262][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:37.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.264][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.268][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.270][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:37.271][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:37.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.273][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.274][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:37.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:37.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.278][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.279][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.280][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.282][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.283][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:37.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:37.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.287][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.288][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.289][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.292][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.293][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.294][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.297][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.298][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.299][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.301][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.303][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:37.304][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:37.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.306][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.307][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:37.308][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:37.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.311][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.312][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:37.313][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:37.314][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:37.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:37.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.318][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.319][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:37.320][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:37.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.323][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.327][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.329][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:37.330][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:37.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.332][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.333][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:37.335][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:37.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.337][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.339][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.341][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.343][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.344][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.346][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.347][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.349][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.351][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.352][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.353][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.356][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.357][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:37.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:37.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.360][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.362][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:37.363][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:37.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.365][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.366][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:37.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:37.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:37.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:37.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:37.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:37.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.383][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:37.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:37.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:37.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.393][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:37.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:37.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:37.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:37.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.417][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:37.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:37.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:37.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:37.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:37.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:37.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:37.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:37.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:37.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:37.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.493][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:37.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:37.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:37.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:37.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:37.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:37.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:37.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:37.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:37.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:37.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:37.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.543][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-03-02 16:06:37.544][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:37.546][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:37.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:37.564][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:37.569][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:37.570][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-03-02 16:06:37.572][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:37.573][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-03-02 16:06:37.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:37.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:37.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:37.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:37.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:37.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:37.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:37.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:37.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:37.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:37.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:37.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:37.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:37.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:37.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:37.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:37.798][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:37.802][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:37.804][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-03-02 16:06:37.805][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:37.807][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-03-02 16:06:37.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:37.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:37.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:37.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:37.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:37.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:37.893][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:37.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:37.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:37.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:37.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:37.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:37.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:37.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:37.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:37.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:37.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:37.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:37.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.921][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:37.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:37.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:37.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:37.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:37.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:37.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.945][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:37.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:37.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:37.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:37.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:37.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:37.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.969][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:37.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:37.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:37.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:37.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:37.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:37.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:37.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:37.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:37.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.002][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.026][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:38.027][private$selectFields]
biodb.TRACE[2024-03-02 16:06:38.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:38.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:38.030][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:38.032][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.033][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.036][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.037][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.038][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.040][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.045][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.046][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.047][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.050][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.054][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.059][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.060][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.061][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.064][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.065][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.069][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.073][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.074][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.075][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.078][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.079][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.082][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.083][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.085][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.087][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.088][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.092][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.093][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.094][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.102][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.106][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.107][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.108][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.111][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.112][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.113][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.115][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.116][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.118][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.120][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.121][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.125][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.126][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.127][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.130][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.131][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.132][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.134][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.136][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.137][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.139][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.141][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.142][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.144][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.146][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:38.147][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:38.148][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.149][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.151][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.153][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.154][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.156][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.161][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.162][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.167][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.171][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.173][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.176][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.181][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.182][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.185][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.190][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.191][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.193][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.195][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.196][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.200][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.201][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.203][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.205][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.206][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:38.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.222][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.227][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.232][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.262][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.301][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.306][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.310][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.344][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.348][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.353][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.395][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-03-02 16:06:38.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:38.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:38.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:38.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:38.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:38.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:38.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:38.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.424][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.438][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.467][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.472][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.496][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.501][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.526][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:38.527][private$selectFields]
biodb.TRACE[2024-03-02 16:06:38.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:38.529][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:38.530][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:38.531][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.533][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.535][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.537][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.538][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.540][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.545][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.546][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.547][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.550][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.551][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.552][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.554][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.555][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.559][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.560][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.561][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.564][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.565][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.566][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.568][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.569][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.571][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.573][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.574][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.575][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.578][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.579][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.582][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.583][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.585][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.587][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.588][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.591][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.593][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.594][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.596][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.601][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.602][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.606][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.607][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.608][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.610][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.612][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.613][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.615][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.616][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.618][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.620][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.621][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.625][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.626][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.627][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.630][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.631][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.632][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.634][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.635][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.639][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.644][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.645][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:38.646][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:38.647][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.651][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.652][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.653][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.656][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.660][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.662][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.663][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.665][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.668][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.674][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.676][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.679][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.680][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.684][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.685][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.686][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.689][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.690][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.691][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.693][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.694][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.698][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.699][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.700][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.703][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.704][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:38.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.720][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.725][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.823][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.827][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.873][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-03-02 16:06:38.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:38.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:38.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:38.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:38.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:38.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:38.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:38.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:38.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:38.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:38.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:38.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:38.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:38.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:38.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:38.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:38.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:38.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.946][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:38.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:38.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:38.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.975][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.980][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:38.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:38.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:38.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:38.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:38.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:38.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.005][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:39.006][private$selectFields]
biodb.TRACE[2024-03-02 16:06:39.007][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:39.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:39.009][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:39.011][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.014][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.015][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.016][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.019][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.023][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.025][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.026][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.031][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.033][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.034][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.036][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.038][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.039][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:39.041][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:39.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.043][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.044][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.045][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.048][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.050][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.053][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.054][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.055][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.063][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.064][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.069][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.070][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.072][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.074][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.075][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.077][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.078][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.080][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.082][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.087][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.088][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.093][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.094][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.097][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.099][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.102][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:39.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:39.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.106][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.107][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.111][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.116][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.117][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.118][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.120][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.121][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.123][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.125][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.126][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.127][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.131][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.132][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:39.134][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:39.135][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.138][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.140][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.141][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.143][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.148][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.149][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.152][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.154][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.155][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.157][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.162][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.163][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.164][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.168][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.169][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.172][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.173][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.174][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.177][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.178][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.181][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.182][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.184][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.186][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.187][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:39.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.203][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.208][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.213][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.317][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.359][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-03-02 16:06:39.360][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:39.361][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:39.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:39.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:39.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:39.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:39.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:39.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:39.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:39.386][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:39.390][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:39.392][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-03-02 16:06:39.394][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:39.395][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-03-02 16:06:39.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:39.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:39.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:39.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:39.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:39.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:39.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:39.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:39.426][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:39.430][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:39.432][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-03-02 16:06:39.433][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:39.435][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-03-02 16:06:39.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:39.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:39.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:39.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:39.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:39.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:39.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:39.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:39.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:39.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:39.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:39.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:39.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:39.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:39.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:39.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:39.497][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:39.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:39.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:39.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:39.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:39.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:39.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:39.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:39.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.521][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.526][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:39.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:39.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.574][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:39.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:39.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.599][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.604][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:39.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:39.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.639][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:39.640][private$selectFields]
biodb.TRACE[2024-03-02 16:06:39.641][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:39.642][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:39.643][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:39.645][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.648][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.649][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.651][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.653][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.660][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.661][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.663][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.665][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.670][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.675][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.676][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:39.678][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:39.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.680][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.681][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.682][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.685][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.689][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.691][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.692][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.694][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.695][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.699][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.700][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.702][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.704][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.705][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:39.706][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:39.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.709][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.710][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.713][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.715][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.716][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.718][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.719][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.721][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.723][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.724][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.725][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.728][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.729][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.730][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.734][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.735][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.738][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.739][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:39.740][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:39.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.742][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.744][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.747][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.748][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.750][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.752][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.753][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.755][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.757][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.758][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.762][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.763][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.764][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.766][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.768][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:39.769][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:39.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.771][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.772][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:39.774][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:39.775][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.776][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.778][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.779][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.781][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.783][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.788][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.789][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.793][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.794][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.795][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.798][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.800][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.802][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.804][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.805][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.807][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.812][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.813][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.815][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.817][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.818][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.819][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.822][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.826][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.828][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:39.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:39.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:39.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.848][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:39.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:39.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:39.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:39.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:39.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:39.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:39.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:39.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:39.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:39.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.951][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.955][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.960][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:39.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:39.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:39.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:39.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:39.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:39.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:39.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-03-02 16:06:40.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:40.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:40.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:40.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:40.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:40.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:40.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:40.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.029][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.073][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.078][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.102][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:40.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:40.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:40.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:40.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.131][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.141][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:40.142][private$selectFields]
biodb.TRACE[2024-03-02 16:06:40.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:40.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:40.145][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:40.146][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.148][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.150][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.151][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.152][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.155][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.159][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.161][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.164][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.165][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.169][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.174][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.175][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.177][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.179][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.180][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.181][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.184][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.186][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.188][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.190][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.191][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.193][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.194][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.198][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.199][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:40.200][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:40.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.203][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.204][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.205][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.207][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.208][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.210][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.212][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.213][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.215][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.217][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.222][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.223][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.232][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.234][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.236][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.237][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.238][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.241][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.242][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.243][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.245][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.247][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.248][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.250][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.251][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.255][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.256][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.257][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.260][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.261][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.262][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.264][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.265][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:40.267][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:40.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.269][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.270][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.272][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.274][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.275][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:40.276][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:40.277][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.281][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.282][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.284][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.286][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.291][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.292][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.295][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.298][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.300][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.301][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.302][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.304][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.306][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.307][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.309][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.310][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.312][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.314][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.315][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.318][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.320][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.321][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.323][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.324][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.325][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.328][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.329][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:40.330][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:40.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.332][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.334][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:40.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.423][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.427][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.432][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.467][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.472][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:40.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:40.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:40.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:40.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:40.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-03-02 16:06:40.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:40.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:40.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:40.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:40.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:40.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:40.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:40.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.548][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.593][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.598][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:40.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:40.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:40.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:40.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.665][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:40.667][private$selectFields]
biodb.TRACE[2024-03-02 16:06:40.668][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:40.669][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:40.670][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:40.671][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.675][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.676][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.677][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.680][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.681][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.684][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.686][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.687][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.689][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.690][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.692][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.694][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.695][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.696][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.699][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.700][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.701][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.703][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.705][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.706][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.708][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.711][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.713][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.714][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.716][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.718][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.719][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.723][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.724][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:40.725][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:40.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.728][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.729][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.730][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.734][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.737][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.738][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.740][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.742][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.747][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.748][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.749][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.752][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.753][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.757][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.758][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.759][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.761][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:40.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.766][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.767][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.769][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.771][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.772][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.774][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.776][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.777][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.779][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.781][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.782][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.783][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.786][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.787][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:40.788][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:40.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.790][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.792][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.793][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:40.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.795][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.796][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:40.798][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:40.799][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.803][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.804][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.806][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.808][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.813][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.814][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.816][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.818][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.819][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.820][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.823][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.825][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.828][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.829][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.832][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.833][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.837][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.838][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.840][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.842][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.843][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.847][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.848][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:40.849][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:40.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.851][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.853][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:40.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:40.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:40.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.869][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.874][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.878][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:40.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:40.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:40.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.903][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:40.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:40.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:40.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:40.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:40.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.976][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.980][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:40.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:40.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:40.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:40.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:40.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.025][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-03-02 16:06:41.027][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:41.028][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:41.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:41.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:41.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:41.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:41.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:41.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:41.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:41.047][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:41.051][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:41.052][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-03-02 16:06:41.054][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:41.055][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-03-02 16:06:41.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:41.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:41.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:41.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:41.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:41.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:41.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:41.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:41.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:41.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:41.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:41.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:41.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:41.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:41.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:41.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:41.113][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:41.117][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:41.119][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-03-02 16:06:41.120][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:41.122][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-03-02 16:06:41.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:41.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:41.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:41.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:41.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:41.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:41.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:41.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:41.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:41.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:41.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:41.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:41.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:41.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:41.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:41.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:41.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:41.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:41.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:41.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:41.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:41.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:41.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:41.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:41.208][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:41.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:41.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:41.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:41.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:41.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:41.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:41.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:41.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:41.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:41.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:41.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.234][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:41.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:41.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.239][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:41.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:41.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:41.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:41.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:41.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:41.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:41.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:41.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:41.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:41.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.284][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.289][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.313][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.318][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:41.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:41.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:41.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.343][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.347][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.352][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:41.353][private$selectFields]
biodb.TRACE[2024-03-02 16:06:41.354][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:41.356][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:41.357][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:41.358][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:41.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:41.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.361][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.363][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:41.364][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:41.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.366][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.371][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.372][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:41.373][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:41.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.375][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.377][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:41.378][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:41.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.380][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.383][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.385][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.386][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.388][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.390][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.391][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.399][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.401][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.404][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.406][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.407][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.411][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:41.412][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:41.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.414][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.415][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.417][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.419][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.420][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.421][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.423][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.425][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:41.426][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:41.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.428][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.429][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:41.430][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:41.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.433][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.438][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.439][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:41.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:41.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.442][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.444][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:41.445][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:41.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.447][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.448][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.452][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.454][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.456][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.458][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.461][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.464][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.466][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.467][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.468][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.471][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.472][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:41.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:41.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.475][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.476][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.478][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.480][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.481][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.483][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.485][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.486][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:41.487][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:41.488][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:41.490][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:41.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.492][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.493][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:41.494][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:41.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.497][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.502][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.503][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:41.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:41.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.506][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.507][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:41.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:41.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.511][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.514][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.516][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.517][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.518][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.521][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.522][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.526][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.527][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.528][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.530][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.531][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.533][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.535][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.536][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:41.538][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:41.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.540][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.541][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.545][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.546][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:41.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:41.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:41.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:41.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.562][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:41.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:41.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.567][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:41.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:41.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.572][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:41.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:41.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:41.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:41.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:41.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:41.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:41.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:41.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:41.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:41.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:41.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.636][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.641][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.646][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.681][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.686][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.690][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:41.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:41.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:41.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:41.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:41.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:41.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-03-02 16:06:41.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:41.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:41.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:41.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:41.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:41.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:41.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:41.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:41.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:41.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:41.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:41.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.757][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:41.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:41.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.761][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:41.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:41.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:41.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:41.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:41.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:41.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:41.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:41.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:41.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.810][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.815][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.839][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.844][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:41.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:41.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:41.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:41.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.873][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.878][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:41.879][private$selectFields]
biodb.TRACE[2024-03-02 16:06:41.880][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:41.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:41.883][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:41.884][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:41.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:41.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.888][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.889][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:41.890][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:41.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.892][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.898][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.899][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:41.900][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:41.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.903][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:41.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:41.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.907][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.909][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.910][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.912][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.913][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.915][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.917][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.918][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.919][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.922][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.923][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.926][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.927][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.929][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.931][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.932][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:41.934][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:41.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.936][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.937][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:41.938][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:41.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.941][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.942][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.943][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:41.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.945][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.946][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:41.948][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:41.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.950][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.951][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:41.953][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:41.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.955][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:41.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.960][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.961][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:41.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:41.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.964][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:41.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:41.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.969][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:41.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.974][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.975][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.976][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:41.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.979][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.980][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:41.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.984][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.985][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.986][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:41.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.989][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.990][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:41.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.993][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:41.995][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:41.997][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:41.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:41.999][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:42.002][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:42.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.004][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.005][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:42.007][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:42.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.009][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.010][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:42.011][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:42.012][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:42.014][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:42.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.016][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.017][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:42.018][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:42.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.021][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.025][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.027][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:42.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:42.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.030][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.031][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:42.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:42.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.035][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.036][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.037][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.040][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.041][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.042][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.044][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.045][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.047][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.050][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.051][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.054][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.055][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.056][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.060][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:42.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:42.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.063][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.064][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:42.065][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:42.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.069][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:42.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:42.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:42.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:42.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:42.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:42.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:42.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:42.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:42.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:42.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.095][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:42.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:42.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:42.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:42.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.120][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:42.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:42.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.125][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:42.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:42.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:42.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:42.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:42.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:42.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:42.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:42.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.160][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.174][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.208][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:42.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:42.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:42.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:42.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:42.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.236][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:42.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:42.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:42.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:42.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:42.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-03-02 16:06:42.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:42.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:42.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:42.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:42.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:42.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:42.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:42.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:42.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:42.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:42.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:42.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.283][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:42.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:42.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:42.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:42.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:42.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:42.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:42.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:42.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:42.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:42.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:42.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:42.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.332][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.337][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.361][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.365][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:42.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:42.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:42.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:42.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:42.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:42.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:42.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:42.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.394][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:42.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:42.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.399][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:42.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:42.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.404][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:42.405][private$selectFields]
biodb.TRACE[2024-03-02 16:06:42.406][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:42.407][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:42.408][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:42.410][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:42.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:42.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.413][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.414][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:42.416][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:42.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.418][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.419][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.423][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.424][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:42.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:42.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.428][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.429][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:42.430][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:42.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.432][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.433][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.435][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.437][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.438][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.440][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.442][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.443][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.444][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.447][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.448][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.449][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.451][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.452][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.454][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.456][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.457][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:42.458][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:42.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.461][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.462][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:42.463][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:42.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.465][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.467][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:42.468][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:42.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.470][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.471][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:42.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:42.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.475][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.476][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:42.477][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:42.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.480][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.484][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.485][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:42.487][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:42.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.489][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:42.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:42.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.494][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.496][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.498][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.499][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.501][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:42.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.503][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.504][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.505][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.508][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.509][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.510][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.512][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.513][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.515][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.517][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.518][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:42.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:42.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.522][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.523][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:42.524][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:42.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.526][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.527][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:42.529][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:42.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.531][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.532][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:42.533][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:42.534][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:42.536][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:42.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.538][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.539][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:42.540][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:42.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.543][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.546][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.548][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.549][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:42.550][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:42.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.561][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:42.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:42.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.565][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.568][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.570][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.571][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.575][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.576][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.579][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.581][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.582][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.584][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.585][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:42.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:42.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.589][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.590][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:42.591][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:42.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.594][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.595][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:42.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:42.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:42.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:42.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:42.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:42.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:42.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:42.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:42.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:42.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:42.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:42.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:42.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:42.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:42.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:42.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:42.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:42.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:42.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:42.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:42.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:42.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:42.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:42.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:42.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:42.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.713][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.722][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:42.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:42.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:42.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:42.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:42.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:42.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:42.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:42.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:42.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.763][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-03-02 16:06:42.765][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:42.766][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:42.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:42.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:42.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:42.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:42.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:42.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:42.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:42.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:42.789][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:42.790][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-03-02 16:06:42.792][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:42.793][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-03-02 16:06:42.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:42.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:42.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:42.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:42.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:42.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:42.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:42.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:42.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:42.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:42.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:42.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:42.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:42.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:42.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:42.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:42.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:42.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:42.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:42.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:42.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:42.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:42.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:42.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:42.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:42.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:42.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:42.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:42.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:42.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:42.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:42.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:42.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:42.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:42.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:42.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:42.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:42.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:42.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:42.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:42.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:42.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:42.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:42.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:42.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:42.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:42.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:42.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:42.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:42.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:42.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:42.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:42.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:42.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:42.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:42.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:42.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:42.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:42.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:42.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:42.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:42.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:43.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:43.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:43.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:43.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:43.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:43.022][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:43.026][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:43.028][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-03-02 16:06:43.029][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:43.031][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-03-02 16:06:43.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:43.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:43.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:43.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:43.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:43.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:43.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:43.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:43.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:43.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:43.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:43.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:43.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:43.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:43.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:43.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:43.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:43.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:43.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:43.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:43.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:43.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:43.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:43.117][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:43.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:43.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:43.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:43.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:43.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:43.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:43.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:43.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.142][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.147][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:43.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:43.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:43.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:43.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:43.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:43.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.192][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.197][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.221][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:43.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:43.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:43.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:43.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:43.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:43.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:43.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:43.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.256][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.261][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:43.263][private$selectFields]
biodb.TRACE[2024-03-02 16:06:43.264][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:43.265][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:43.266][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:43.267][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.269][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.271][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.272][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.273][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.276][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.280][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.282][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:43.283][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:43.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.285][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.286][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:43.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:43.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.290][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.293][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.295][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.296][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.297][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.300][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.301][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.302][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.304][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.306][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.307][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.310][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.311][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.312][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.314][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.316][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:43.317][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:43.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.319][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.320][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:43.322][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:43.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.324][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.325][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.327][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.329][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.330][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.334][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.335][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.337][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.339][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.344][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.350][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:43.352][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:43.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.354][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.355][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:43.357][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:43.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.359][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.360][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.361][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.364][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.365][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.366][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.368][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.370][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.373][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.374][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.375][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.378][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.379][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.380][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.382][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.384][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:43.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:43.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.387][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:43.390][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:43.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.392][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.393][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.394][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.396][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.398][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:43.399][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:43.400][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.401][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.404][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.405][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.406][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.408][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.413][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.414][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:43.415][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:43.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.417][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.419][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:43.420][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:43.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.422][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.425][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.427][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.428][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.429][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.431][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.433][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.436][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.437][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.439][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.441][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.442][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.444][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.446][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.447][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:43.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:43.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.450][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.452][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:43.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:43.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.455][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.456][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:43.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.472][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.477][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:43.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:43.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:43.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:43.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:43.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:43.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:43.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:43.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:43.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:43.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:43.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:43.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.545][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.550][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.555][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.588][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.593][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:43.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:43.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.607][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:43.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:43.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:43.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:43.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:43.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:43.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:43.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:43.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:43.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.641][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-03-02 16:06:43.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:43.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:43.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:43.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:43.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:43.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:43.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:43.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.665][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:43.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:43.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:43.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:43.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:43.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:43.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:43.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:43.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.718][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.747][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.752][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:43.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:43.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:43.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:43.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.766][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:43.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.776][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.780][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.785][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:43.786][private$selectFields]
biodb.TRACE[2024-03-02 16:06:43.788][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:43.789][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:43.790][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:43.791][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.795][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.796][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.797][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.799][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.804][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.805][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:43.806][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:43.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.808][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:43.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:43.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.813][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.815][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.818][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.819][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.820][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.822][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.824][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.825][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.827][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.828][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.829][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.832][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.833][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.834][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.836][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.838][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:43.839][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:43.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.841][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.842][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:43.844][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:43.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.846][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.847][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.848][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.850][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.852][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.853][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.855][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.856][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.858][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.860][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.865][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.866][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:43.867][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:43.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.869][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:43.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:43.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.874][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.878][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.880][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.881][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:43.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.883][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.884][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.885][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.888][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.889][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.890][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.892][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.893][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.895][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.897][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.898][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:43.899][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:43.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.901][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.903][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:43.904][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:43.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.906][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.907][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.909][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:43.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.911][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.912][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:43.913][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:43.914][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.918][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.919][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.920][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.922][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:43.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.927][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.928][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:43.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:43.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.932][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:43.934][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:43.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.936][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.939][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:43.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.941][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.942][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.943][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:43.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:43.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.950][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.952][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.953][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:43.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.956][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.957][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:43.958][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:43.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.961][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.962][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:43.963][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:43.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.966][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.967][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:43.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:43.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:43.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.983][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.988][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.994][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:43.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:43.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:43.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:43.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.024][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.087][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.092][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.097][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:44.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:44.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:44.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:44.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:44.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:44.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:44.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:44.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:44.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:44.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.142][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-03-02 16:06:44.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:44.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:44.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:44.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:44.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:44.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:44.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:44.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:44.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:44.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:44.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:44.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.165][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:44.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:44.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:44.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.213][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:44.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:44.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.217][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:44.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:44.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.241][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.246][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:44.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:44.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:44.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:44.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:44.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:44.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:44.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:44.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.270][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:44.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:44.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.275][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:44.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:44.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.279][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:44.280][private$selectFields]
biodb.TRACE[2024-03-02 16:06:44.282][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:44.283][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:44.284][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:44.285][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:44.286][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:44.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.289][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.290][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:44.291][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:44.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.293][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.298][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.299][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.303][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.305][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.308][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.309][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.310][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.312][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.313][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:44.315][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:44.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.317][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.318][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.322][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.323][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.327][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.328][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.329][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.331][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.332][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:44.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:44.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.336][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.337][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:44.338][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:44.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.341][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.342][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:44.343][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:44.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.346][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.347][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:44.348][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:44.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.350][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.352][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:44.353][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:44.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.355][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.360][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.361][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.363][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.365][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.366][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.368][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.370][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.371][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.372][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.375][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.376][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:44.377][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:44.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.380][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.381][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.384][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.389][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.390][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.392][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.394][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.395][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:44.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:44.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.399][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:44.401][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:44.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.404][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.405][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:44.406][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:44.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.410][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:44.411][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:44.412][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:44.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:44.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.416][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.417][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:44.419][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:44.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.421][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.424][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.426][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.427][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.429][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.431][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.432][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.436][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.437][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.438][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.441][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.442][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.443][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.446][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.447][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.448][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.450][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.452][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.453][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.455][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.456][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:44.458][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:44.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.460][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.461][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:44.462][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:44.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.465][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.466][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:44.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:44.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:44.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:44.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:44.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:44.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:44.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:44.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:44.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.491][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:44.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:44.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.588][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.593][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.598][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:44.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:44.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:44.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:44.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:44.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:44.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:44.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:44.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:44.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:44.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:44.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.639][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-03-02 16:06:44.641][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:44.642][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 16:06:44.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:44.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:44.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:44.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:44.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:44.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:44.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:44.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:44.725][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:44.729][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:44.730][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-03-02 16:06:44.732][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:44.733][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-03-02 16:06:44.737][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:44.741][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:44.742][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-03-02 16:06:44.744][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:44.746][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-03-02 16:06:44.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:44.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:44.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:44.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:44.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:44.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:44.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:44.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:44.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:44.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:44.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:44.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:44.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:44.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:44.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:44.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:44.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:44.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:44.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:44.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:44.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:44.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:44.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:44.830][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:44.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:44.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:44.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:44.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:44.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:44.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:44.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:44.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:44.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:44.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:44.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:44.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.854][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:44.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:44.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.859][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:44.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:44.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.906][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.912][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:44.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:44.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:44.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:44.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.936][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.940][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:44.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:44.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:44.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:44.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:44.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:44.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.960][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:44.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:44.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.965][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:44.966][private$selectFields]
biodb.TRACE[2024-03-02 16:06:44.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:44.969][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:44.970][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:44.971][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:44.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:44.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.974][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.976][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:44.977][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:44.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.979][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:44.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.984][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.985][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:44.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:44.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.989][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.990][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:44.991][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:44.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.993][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.995][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.996][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:44.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:44.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:44.999][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.001][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.003][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.004][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.005][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.008][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.012][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.013][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.015][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.017][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.019][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.023][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.024][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.025][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.027][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.028][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.032][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.033][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.034][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.037][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.041][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.043][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.046][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.047][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.051][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.053][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.056][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.057][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.058][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.060][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.062][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.063][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.065][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.066][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.068][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.070][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.071][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.072][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.075][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.076][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.079][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.081][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.084][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.085][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:45.087][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:45.088][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.093][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.094][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.102][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.103][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.106][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.107][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.108][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.110][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.112][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.113][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.115][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.116][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.118][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.120][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.121][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.122][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.125][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.126][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.127][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.129][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.131][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.132][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.135][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.136][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.140][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.141][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.145][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.146][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:45.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.162][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.166][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.171][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.195][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.235][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.240][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.245][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.285][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.289][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.336][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-03-02 16:06:45.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:45.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:45.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:45.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:45.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:45.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:45.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:45.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.360][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.365][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.407][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.412][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.435][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.464][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:45.465][private$selectFields]
biodb.TRACE[2024-03-02 16:06:45.466][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:45.467][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:45.468][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:45.469][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.473][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.474][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.475][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.478][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.482][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.483][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.485][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.487][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.489][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.492][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.493][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.494][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.496][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.497][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.499][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.501][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.502][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.503][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.506][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.510][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.511][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.513][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.515][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.516][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.517][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.520][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.524][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.526][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.529][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.530][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.531][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.534][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.538][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.540][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.543][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.545][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.548][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.552][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.554][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.555][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.557][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.558][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.559][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.562][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.563][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.566][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.568][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.569][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.571][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.572][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.573][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.576][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.577][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.578][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.580][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.582][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:45.583][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:45.584][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.588][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.589][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.590][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.593][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.594][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.595][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.597][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.599][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.600][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.602][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.607][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.610][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.612][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.613][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.614][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.617][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.618][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.620][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.622][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.623][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.624][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.627][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.628][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.629][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.631][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.633][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.636][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.638][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.639][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.641][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.642][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:45.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.663][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.668][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.743][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.829][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-03-02 16:06:45.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:45.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:45.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:45.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:45.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:45.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:45.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:45.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.859][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.907][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:45.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.931][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.936][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:45.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:45.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:45.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:45.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.960][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:45.961][private$selectFields]
biodb.TRACE[2024-03-02 16:06:45.962][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:45.963][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:45.964][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:45.965][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:45.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:45.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.969][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.970][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:45.971][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:45.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.974][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:45.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.978][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.980][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:45.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:45.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.983][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:45.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:45.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.988][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:45.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.993][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.994][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.995][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:45.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:45.997][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:45.999][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.000][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.002][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.003][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.005][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.007][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.008][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.009][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.012][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.013][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.014][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.016][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.018][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.019][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.021][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.022][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.026][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.027][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.033][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.036][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.041][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.042][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.043][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.045][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.046][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.048][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.050][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.051][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.052][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.055][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.056][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.057][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.061][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.062][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.063][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.066][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.068][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.070][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.071][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.073][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.075][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.076][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.080][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.081][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.084][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.086][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:46.087][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:46.088][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.093][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.094][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.102][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.103][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.106][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.107][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.108][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.110][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.111][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.113][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.115][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.116][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.117][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.120][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.124][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.125][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.127][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.129][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.130][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.134][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.135][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.136][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.138][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.140][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:46.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.156][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.165][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.258][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-03-02 16:06:46.312][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:46.314][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:46.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:46.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:46.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:46.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:46.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:46.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:46.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:46.332][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:46.337][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:46.338][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-03-02 16:06:46.340][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:46.342][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-03-02 16:06:46.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:46.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:46.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:46.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:46.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:46.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:46.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:46.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:46.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:46.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:46.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:46.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:46.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:46.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:46.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:46.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:46.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:46.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:46.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:46.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:46.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:46.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:46.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:46.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:46.434][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:46.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:46.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:46.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:46.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:46.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:46.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:46.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.509][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.541][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.565][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:46.566][private$selectFields]
biodb.TRACE[2024-03-02 16:06:46.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:46.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:46.569][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:46.571][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.572][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.574][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.575][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.577][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.579][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.583][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.584][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.586][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.588][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.590][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.593][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.594][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.595][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.597][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.598][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.600][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.602][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.603][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.604][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.606][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.608][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.609][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.611][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.612][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.614][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.616][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.617][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.618][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.620][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.623][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.625][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.626][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.630][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.631][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.632][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.635][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.639][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.640][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.642][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.644][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.649][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.650][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.651][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.654][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.655][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.656][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.658][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.660][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.661][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.663][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.664][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.668][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.669][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.671][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.673][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.674][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.678][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.679][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.680][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.683][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.684][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:46.685][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:46.686][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.690][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.691][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.693][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.695][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.700][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.701][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.702][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.704][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.709][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.711][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.714][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.715][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.716][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.718][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.720][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.723][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.726][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.728][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.729][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.730][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.733][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.734][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.735][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.737][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.738][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.740][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.742][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.743][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:46.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.759][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.764][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.768][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.797][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.840][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.845][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:46.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:46.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:46.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:46.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:46.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:46.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:46.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.930][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-03-02 16:06:46.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:46.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:46.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:46.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:46.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:46.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:46.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:46.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:46.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:46.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:46.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:46.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:46.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:46.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:46.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:46.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:46.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.002][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.007][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.031][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.035][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.060][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:47.061][private$selectFields]
biodb.TRACE[2024-03-02 16:06:47.062][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:47.063][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:47.064][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:47.066][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.067][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.069][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.070][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.072][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.074][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.079][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.080][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.083][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.086][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.088][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.089][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.090][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.097][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.098][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.102][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.103][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.104][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.107][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.108][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.109][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.111][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.112][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.116][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.117][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.118][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.121][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.122][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.126][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.127][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.128][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.130][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.135][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.137][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.140][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.141][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.145][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.146][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.148][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.150][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.151][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.152][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.155][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.156][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.157][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.159][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.161][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.162][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.164][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.166][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.168][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.170][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.171][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.174][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.176][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.177][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.179][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.180][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:47.186][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:47.188][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.191][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.192][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.193][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.196][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.200][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.201][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.203][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.205][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.209][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.211][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.212][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.214][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.215][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.219][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.220][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.221][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.223][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.224][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.226][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.228][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.229][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.230][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.232][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.234][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.235][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.237][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.238][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:47.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.254][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.259][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.264][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.355][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.360][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.365][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.406][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-03-02 16:06:47.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:47.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:47.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:47.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:47.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:47.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:47.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:47.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.429][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.433][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.475][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.480][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.504][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.508][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.533][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:47.534][private$selectFields]
biodb.TRACE[2024-03-02 16:06:47.535][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:47.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:47.537][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:47.539][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.540][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.542][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.543][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.545][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.547][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.551][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.553][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.554][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.556][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.566][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.567][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.568][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.570][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.572][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.573][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.575][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.576][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.577][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.580][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.584][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.585][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.587][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.589][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.590][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.594][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.595][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.596][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.598][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.599][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.603][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.604][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.605][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.607][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.612][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.613][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.617][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.621][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.626][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.627][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.628][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:47.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.631][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.632][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.633][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.635][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.636][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.640][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.641][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.642][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.645][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.646][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.647][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.649][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.650][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.652][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.654][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.655][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:47.656][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:47.657][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.661][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.662][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.663][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.665][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.670][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.671][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.675][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.676][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.677][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.680][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.681][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.684][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.686][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.689][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.690][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.692][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.694][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.695][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.696][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.699][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.700][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.701][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.703][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.704][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.706][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.708][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.709][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:47.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:47.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.734][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:47.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:47.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:47.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:47.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:47.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:47.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:47.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:47.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.827][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.836][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:47.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:47.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:47.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:47.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:47.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.876][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-03-02 16:06:47.877][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:47.879][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:47.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:47.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:47.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:47.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:47.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:47.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:47.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:47.897][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:47.901][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:47.902][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-03-02 16:06:47.904][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:47.905][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-03-02 16:06:47.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:47.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:47.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:47.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:47.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:47.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:47.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:47.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:47.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:47.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:47.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:47.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:47.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:47.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:47.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:47.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:47.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:47.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:47.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:47.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:47.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:47.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:47.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:47.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:47.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:47.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:47.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:47.995][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:47.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:47.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:47.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:48.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:48.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:48.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:48.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:48.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.067][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.072][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.123][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:48.124][private$selectFields]
biodb.TRACE[2024-03-02 16:06:48.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:48.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:48.128][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:48.129][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.133][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.134][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.135][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.138][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.139][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.140][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.142][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.143][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.145][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.147][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.148][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.149][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.152][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.153][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.154][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.156][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.159][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.161][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.162][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.164][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.167][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.170][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.172][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.173][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.175][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.176][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.180][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.183][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.185][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.186][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.190][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.191][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.192][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.194][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.199][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.200][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.202][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.204][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.205][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.206][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.209][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.211][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.213][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.215][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.216][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.218][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.219][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.223][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.224][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.228][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.229][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.230][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.232][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.233][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.240][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.241][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.244][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.246][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:48.247][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:48.248][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.249][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.252][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.253][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.254][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.256][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.261][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.262][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.264][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.266][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.267][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.268][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.271][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.275][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.276][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.278][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.280][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.281][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.282][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.285][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.290][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.291][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.292][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.294][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.296][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.297][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.299][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.302][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.304][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.305][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:48.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.335][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.359][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.397][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.402][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.407][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.441][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.446][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.450][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.491][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-03-02 16:06:48.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:48.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:48.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:48.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:48.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:48.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:48.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:48.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.515][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.520][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.563][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.568][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.592][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.620][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:48.622][private$selectFields]
biodb.TRACE[2024-03-02 16:06:48.623][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:48.624][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:48.625][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:48.626][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.627][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.630][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.631][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.632][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.634][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.639][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.640][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.642][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.644][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.648][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.650][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.651][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.653][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.654][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.655][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.658][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.659][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.662][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.664][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.665][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.667][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.668][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.672][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.673][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.674][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.677][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.678][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.679][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.682][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.683][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.684][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.686][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.688][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.689][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.691][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.701][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.703][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.706][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.711][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.712][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.713][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.717][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.718][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:48.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.720][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.722][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.723][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.725][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.726][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.728][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.730][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.731][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.732][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.735][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.736][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.739][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.741][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.742][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.744][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.745][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:48.747][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:48.748][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.751][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.752][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.754][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.756][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.757][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.761][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.762][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.763][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.765][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.766][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.768][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.770][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.771][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.772][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.775][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.780][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.781][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.783][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.785][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.786][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.790][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.791][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.794][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.796][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.797][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.799][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.800][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:48.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.821][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.826][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:48.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:48.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:48.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:48.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:48.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:48.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:48.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:48.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.918][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.923][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.928][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:48.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:48.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:48.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:48.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:48.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.970][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-03-02 16:06:48.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:48.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:48.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:48.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:48.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:48.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:48.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:48.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:48.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:48.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:48.995][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:48.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:48.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:48.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.000][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.048][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.072][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.082][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:49.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:49.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:49.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:49.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:49.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:49.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.101][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.106][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:49.107][private$selectFields]
biodb.TRACE[2024-03-02 16:06:49.108][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:49.109][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:49.110][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:49.111][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.113][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.115][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.116][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.117][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.120][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.124][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.125][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.127][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.129][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.133][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.135][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.138][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.139][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.141][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.143][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.144][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.145][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.147][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.150][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.152][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.153][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.157][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.158][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:49.159][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:49.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.161][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.163][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:49.164][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:49.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.167][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.168][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.171][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.172][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.173][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.175][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.180][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.181][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.182][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.185][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.186][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.187][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.189][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.190][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.192][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.194][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.196][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.199][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.200][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.203][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.206][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.208][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.209][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.210][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.213][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.214][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:49.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:49.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.217][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.219][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:49.220][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:49.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.222][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.223][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:49.224][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:49.226][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.229][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.230][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.232][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.234][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.235][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.238][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.240][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.241][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.244][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.245][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.246][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.248][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.249][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.251][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.253][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.254][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.255][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.258][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.259][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.260][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.262][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.263][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.265][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.267][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.268][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:49.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:49.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.271][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.273][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:49.274][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:49.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.276][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.277][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:49.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.303][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.398][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.403][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.408][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:49.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:49.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:49.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:49.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:49.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:49.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:49.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:49.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:49.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:49.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:49.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.450][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-03-02 16:06:49.451][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:49.452][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:49.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:49.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:49.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:49.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:49.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:49.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:49.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:49.485][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:49.489][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:49.491][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-03-02 16:06:49.492][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:49.494][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-03-02 16:06:49.497][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:49.501][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:49.503][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-03-02 16:06:49.505][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:49.506][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-03-02 16:06:49.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:49.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:49.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:49.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:49.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:49.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:49.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:49.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:49.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:49.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:49.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:49.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:49.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:49.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:49.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:49.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:49.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:49.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:49.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:49.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:49.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:49.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:49.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:49.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:49.594][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:49.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:49.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:49.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:49.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:49.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:49.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:49.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:49.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.625][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.668][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.702][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:49.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:49.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:49.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:49.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:49.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:49.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.726][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:49.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:49.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.731][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:49.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:49.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.736][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:49.737][private$selectFields]
biodb.TRACE[2024-03-02 16:06:49.738][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:49.739][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:49.741][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:49.742][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.745][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.747][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.748][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.750][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.755][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.756][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.757][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.760][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.761][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.762][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.764][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.766][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.767][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.769][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.770][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.772][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.774][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.775][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.776][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.779][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.780][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.783][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.784][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.786][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.788][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.789][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:49.790][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:49.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.793][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.794][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:49.795][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:49.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.797][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.799][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:49.800][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:49.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.802][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.803][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.807][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.808][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.809][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.812][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.816][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.818][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.821][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.826][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.827][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.828][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.831][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.832][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.833][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.835][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.837][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.838][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.840][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.841][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.845][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.846][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.847][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.855][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.856][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:49.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:49.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.860][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.861][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:49.862][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:49.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.865][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.867][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:49.868][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:49.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.870][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.871][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:49.872][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:49.873][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.877][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.878][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.879][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.881][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.886][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.887][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.891][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.892][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.893][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.895][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.898][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:49.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.900][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.901][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.902][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:49.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.904][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.905][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.907][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:49.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.909][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:49.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.913][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.915][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:49.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.918][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.919][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:49.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:49.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.923][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.924][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:49.925][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:49.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.927][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.928][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:49.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:49.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:49.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.948][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.953][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:49.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:49.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:49.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:49.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:49.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:49.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:49.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:49.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:49.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.015][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.024][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.068][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.109][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-03-02 16:06:50.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:50.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:50.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:50.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:50.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:50.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:50.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:50.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.137][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.151][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:50.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:50.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:50.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:50.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:50.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:50.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:50.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:50.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.180][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.209][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.214][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.236][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.245][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.255][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:50.256][private$selectFields]
biodb.TRACE[2024-03-02 16:06:50.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:50.258][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:50.259][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:50.260][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.262][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.264][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.265][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.266][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.269][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.273][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.275][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:50.276][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:50.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.278][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:50.281][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:50.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.283][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.284][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.286][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.288][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.289][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.290][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.292][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.294][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.297][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.298][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.302][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.303][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.304][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.307][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.308][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.309][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.312][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.313][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.314][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.316][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.317][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.319][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.321][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.322][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.326][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.327][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.328][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.331][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.335][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.336][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:50.338][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:50.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.340][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.341][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:50.342][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:50.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.344][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.346][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.347][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.349][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.350][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.351][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.354][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.355][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.358][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.361][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.363][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.364][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.367][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.368][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.370][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.372][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.377][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.378][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.379][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.381][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.383][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:50.384][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:50.385][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.389][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.390][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.391][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.393][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.398][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.399][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:50.400][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:50.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.403][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:50.405][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:50.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.407][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.408][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.410][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.412][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.413][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.414][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.417][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.418][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.419][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.421][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.423][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.424][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.426][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.427][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.429][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.431][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.432][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.433][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.436][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.437][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.438][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.440][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.442][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:50.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.457][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.462][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.467][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:50.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:50.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:50.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:50.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:50.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:50.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:50.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:50.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:50.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:50.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:50.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:50.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.536][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.540][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.585][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.648][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-03-02 16:06:50.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:50.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:50.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:50.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:50.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:50.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:50.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:50.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:50.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:50.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:50.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:50.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:50.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:50.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:50.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:50.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.720][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.725][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.749][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.777][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.782][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.787][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:50.788][private$selectFields]
biodb.TRACE[2024-03-02 16:06:50.789][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:50.790][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:50.792][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:50.793][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.794][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.796][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.797][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.799][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.801][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.806][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.807][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:50.808][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:50.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.810][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:50.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:50.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.815][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.816][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.820][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.822][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.825][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.826][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.829][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.831][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.832][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.834][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.836][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.837][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.840][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.842][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.843][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.846][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.848][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.849][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.852][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.853][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.854][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.856][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.858][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.861][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.863][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.864][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.866][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.871][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.872][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:50.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:50.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.876][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.877][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:50.879][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:50.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.881][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.882][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.884][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.886][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.887][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.888][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:50.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.891][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.892][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.893][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.895][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.897][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.898][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.900][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.901][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.903][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.905][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.906][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.910][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.911][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.912][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.914][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.916][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.917][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:50.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.919][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.921][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:50.922][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:50.923][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.927][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.928][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.929][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.931][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:50.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.936][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.937][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:50.939][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:50.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.941][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:50.943][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:50.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:50.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.951][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.952][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.953][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:50.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.955][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.956][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.958][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:50.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.960][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.961][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.963][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:50.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.965][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.966][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:50.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:50.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.970][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.971][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:50.972][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:50.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.975][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.976][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:50.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:50.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:50.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.992][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:50.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:50.997][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:50.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:50.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:51.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.098][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.103][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.148][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-03-02 16:06:51.150][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:51.151][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:51.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:51.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:51.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:51.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:51.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:51.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:51.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:51.169][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:51.173][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:51.175][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-03-02 16:06:51.176][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:51.178][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-03-02 16:06:51.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:51.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:51.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:51.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:51.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:51.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:51.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:51.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:51.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:51.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:51.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:51.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:51.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:51.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:51.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:51.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:51.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:51.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:51.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:51.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:51.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:51.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:51.263][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:51.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:51.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:51.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:51.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:51.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:51.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:51.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:51.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:51.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:51.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:51.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.287][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:51.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:51.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:51.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.335][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.339][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.364][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.369][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.398][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.403][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.407][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:51.408][private$selectFields]
biodb.TRACE[2024-03-02 16:06:51.409][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:51.411][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:51.412][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:51.413][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:51.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:51.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.416][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.418][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:51.419][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:51.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.421][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.426][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.427][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.428][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.430][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.432][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.435][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.440][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.441][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.442][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.444][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.445][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.447][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.449][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.450][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.451][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.454][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.455][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.456][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.459][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.460][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.461][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.463][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.465][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.466][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.469][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.470][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.471][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.473][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.475][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:51.476][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:51.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.478][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.479][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:51.481][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:51.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.483][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.488][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.489][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.492][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.493][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.495][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.497][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.498][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.499][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.502][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.503][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.504][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.506][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.508][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.509][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.511][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.512][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.514][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.516][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.517][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.518][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.521][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.522][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.526][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.527][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.528][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.530][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.532][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.533][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.535][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.536][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:51.538][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:51.539][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:51.540][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:51.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.542][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.543][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:51.545][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:51.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.547][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.552][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.553][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.554][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.556][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.557][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.559][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.561][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.562][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.563][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.566][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.567][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.568][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.570][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.571][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.573][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.575][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.576][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.580][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.581][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.582][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.584][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.585][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.589][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.590][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.591][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.594][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.595][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:51.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:51.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:51.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:51.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:51.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:51.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:51.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:51.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:51.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.615][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:51.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:51.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:51.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:51.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.684][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.689][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.694][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.729][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.786][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-03-02 16:06:51.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:51.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:51.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:51.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:51.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:51.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:51.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:51.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:51.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:51.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:51.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:51.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:51.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.815][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:51.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:51.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.859][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.864][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.918][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.922][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.927][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:51.928][private$selectFields]
biodb.TRACE[2024-03-02 16:06:51.929][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:51.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:51.932][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:51.933][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:51.934][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:51.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.937][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.938][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:51.939][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:51.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.941][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:51.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.947][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:51.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:51.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.951][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.952][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:51.953][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:51.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.956][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.957][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.958][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:51.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.960][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.962][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.963][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:51.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.965][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.966][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.968][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:51.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.970][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.971][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.973][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:51.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.975][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.976][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.977][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:51.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.980][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.981][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:51.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:51.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.985][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.986][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:51.987][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:51.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.989][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.991][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.992][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:51.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.994][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:51.995][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:51.997][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:51.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:51.999][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.000][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.002][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.004][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.005][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.009][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.010][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.014][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.015][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.016][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.018][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.020][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.021][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.023][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.024][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.026][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.029][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.031][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.033][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.034][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.035][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.038][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.039][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.040][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.042][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.044][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:52.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:52.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:52.051][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:52.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.054][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.055][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:52.056][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:52.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.060][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:52.061][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:52.062][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.066][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.067][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.068][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.070][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.071][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.075][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.076][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.077][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.080][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.084][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.089][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.090][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.091][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.095][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.098][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.099][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.101][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.103][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.104][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:52.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:52.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.107][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.109][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:52.110][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:52.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.112][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.113][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:52.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.129][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.134][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.138][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.174][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.242][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.247][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:52.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:52.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:52.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:52.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:52.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:52.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:52.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:52.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:52.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:52.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.288][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-03-02 16:06:52.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:52.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:52.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:52.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:52.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:52.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:52.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:52.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.312][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.317][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.337][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.361][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.366][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.389][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.394][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:52.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:52.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:52.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:52.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:52.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:52.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:52.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.418][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:52.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:52.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:52.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:52.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.427][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:52.429][private$selectFields]
biodb.TRACE[2024-03-02 16:06:52.430][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:52.431][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:52.432][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:52.433][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.437][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.438][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.439][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.441][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.446][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.447][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.448][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.451][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.452][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.453][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.456][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.457][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.458][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.461][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.462][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.463][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.466][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.467][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.468][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.470][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.471][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.473][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.475][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.476][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.477][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.480][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.481][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:52.482][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:52.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.485][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.486][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:52.487][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:52.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.489][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.491][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:52.492][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:52.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.494][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.495][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.497][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.499][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.500][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.501][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.504][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.505][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.509][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.510][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.511][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.513][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.515][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.516][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.518][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.519][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.521][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.523][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.524][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.525][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.527][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.529][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.530][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.532][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.533][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.542][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.543][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.544][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.547][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.548][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:52.549][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:52.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.551][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.552][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:52.554][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:52.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.556][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.557][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:52.558][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:52.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.561][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.562][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:52.563][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:52.564][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.568][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.569][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.570][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.572][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.577][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.578][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.579][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.581][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.583][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.584][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.586][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.588][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.591][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.592][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.593][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.595][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.596][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.598][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.600][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.601][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.602][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.605][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.606][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:52.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:52.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.609][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.610][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:52.612][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:52.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.614][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.615][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:52.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.631][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.636][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.641][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.744][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:52.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:52.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:52.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:52.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:52.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:52.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:52.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:52.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:52.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:52.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:52.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:52.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:52.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.784][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-03-02 16:06:52.785][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:52.787][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 16:06:52.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:52.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:52.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:52.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:52.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:52.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:52.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 16:06:52.806][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-02 16:06:52.810][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 16:06:52.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-03-02 16:06:52.813][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 16:06:52.815][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-03-02 16:06:52.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:52.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:52.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:52.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:52.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:52.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:52.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:52.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:52.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:52.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:52.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:52.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:52.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:52.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:52.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:52.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:52.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:52.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:52.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:52.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:52.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:52.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:52.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:52.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 16:06:52.904][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 16:06:52.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:52.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:52.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:52.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:52.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:52.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:52.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:52.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.934][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.939][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:52.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:52.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:52.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:52.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:52.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:52.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:52.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.982][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:52.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:52.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:52.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.014][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.038][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.043][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.048][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.053][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:53.054][private$selectFields]
biodb.TRACE[2024-03-02 16:06:53.055][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:53.056][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:53.058][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:53.059][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.060][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.062][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.064][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.065][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.067][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.072][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.073][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.074][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.081][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.082][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.084][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.086][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.087][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.088][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.090][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.092][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.095][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.096][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.098][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.100][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.101][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.102][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.105][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.106][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.109][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.114][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.115][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.116][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.119][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.120][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.123][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.125][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.126][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.128][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.133][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.134][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.138][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.139][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.140][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.142][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.145][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.147][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.148][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.150][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.152][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.153][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.154][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.157][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.158][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.159][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.162][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.163][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.164][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.167][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.169][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.171][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.172][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.173][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.176][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.177][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.178][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.180][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.182][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:53.183][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:53.184][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.188][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.189][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.190][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.192][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.197][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.198][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.202][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.207][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.208][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.209][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.211][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.212][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.214][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.216][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.217][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.221][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.222][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.226][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.227][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.228][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.230][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.231][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.233][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.235][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.236][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.237][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.240][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.241][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:53.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.257][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.267][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.297][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.341][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.345][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.350][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.384][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.393][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-03-02 16:06:53.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:53.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:53.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:53.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:53.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:53.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:53.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:53.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.457][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.462][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.505][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.510][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.539][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.563][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.568][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.573][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:53.574][private$selectFields]
biodb.TRACE[2024-03-02 16:06:53.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:53.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:53.577][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:53.578][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.582][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.583][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.584][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.587][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.591][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.593][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.594][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.596][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.597][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.599][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.601][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.603][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.604][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.606][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.609][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.611][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.612][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.613][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.616][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.620][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.622][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.623][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.625][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.626][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.628][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.630][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.631][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.632][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.634][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.636][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.637][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.639][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.640][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.642][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.644][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.645][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.646][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.649][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.650][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.653][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.655][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.658][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.659][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.661][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.663][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.664][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.665][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.667][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.669][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.670][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:53.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.672][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.673][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.677][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.682][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.683][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.684][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.686][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.692][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.696][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.697][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.698][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.701][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.702][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.703][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:53.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.705][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.707][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:53.708][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:53.709][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.710][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.712][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.714][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.715][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.717][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.722][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.723][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.724][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.727][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.728][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.729][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.733][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.734][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.736][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.738][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.739][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.741][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.742][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.744][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.746][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.747][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.748][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.750][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.752][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.755][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.756][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.758][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.760][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.761][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:53.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.777][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.781][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.786][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:53.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.879][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:53.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:53.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:53.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:53.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:53.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.930][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-03-02 16:06:53.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 16:06:53.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:53.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:53.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:53.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:53.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:53.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 16:06:53.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:53.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:53.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:53.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:53.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:53.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:53.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:53.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:53.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:53.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:53.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.003][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:54.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:54.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.008][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:54.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:54.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.032][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.037][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:54.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:54.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:54.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:54.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:54.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:54.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:54.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:54.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.061][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:54.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:54.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:54.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:54.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.076][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:54.077][private$selectFields]
biodb.TRACE[2024-03-02 16:06:54.078][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 16:06:54.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 16:06:54.080][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-03-02 16:06:54.082][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:54.083][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:54.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.086][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:54.088][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:54.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.090][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:54.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:54.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.094][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.096][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:54.097][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:54.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.099][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.100][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:54.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:54.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.104][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.105][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.106][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.109][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.110][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:54.111][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:54.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.113][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.114][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.118][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.120][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.123][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.124][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.125][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.127][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.129][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:54.130][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:54.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.132][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.133][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:54.134][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:54.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.137][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.138][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:54.139][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:54.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.141][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.143][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:54.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:54.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.146][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.147][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:54.149][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:54.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.151][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:54.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:54.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.155][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.157][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:54.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:54.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.160][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:54.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:54.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.165][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.166][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.167][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.170][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.171][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:54.172][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 16:06:54.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.174][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.175][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.177][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.181][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.183][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.185][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.187][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.188][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.190][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.191][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:54.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:54.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.195][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.196][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:54.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:54.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.200][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.201][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 16:06:54.202][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 16:06:54.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.204][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.206][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:54.207][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-03-02 16:06:54.208][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:54.209][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:54.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.211][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.213][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:54.214][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:54.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.216][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:54.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:54.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.221][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.222][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:54.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:54.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.226][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.227][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:54.228][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:54.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.232][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.233][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.235][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.236][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.238][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.240][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.241][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.242][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.245][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.246][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.247][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.249][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.251][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:54.252][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:54.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.254][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.255][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:54.257][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:54.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.259][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.260][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-03-02 16:06:54.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:54.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:54.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:54.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:54.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 16:06:54.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 16:06:54.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:54.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:54.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:54.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:54.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-02 16:06:54.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-02 16:06:54.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:54.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:54.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:54.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:54.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 16:06:54.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 16:06:54.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:54.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:54.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:54.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:54.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 16:06:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 16:06:54.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:54.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:54.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:54.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:54.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 16:06:54.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 16:06:54.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 16:06:54.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 16:06:54.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 16:06:54.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.380][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.385][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-02 16:06:54.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:54.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:54.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:54.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:54.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 16:06:54.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 16:06:54.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:54.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:54.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:54.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:54.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 16:06:54.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 16:06:54.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.431][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-03-02 16:06:54.432][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 16:06:54.433][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 16:06:54.441][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:06:54.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:06:54.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.446][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:06:54.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:06:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 16:06:54.456][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 16:06:54.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 16:06:54.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 16:06:54.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 16:06:54.464][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-02 16:06:54.466][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-03-02 16:06:54.467][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-03-02 16:06:54.468][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-02 16:06:54.469][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 16:06:54.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 16:06:54.471][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 16:06:54.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 16:06:54.473][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 16:06:54.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1398 ]
> 
> proc.time()
   user  system elapsed 
 87.457   3.882 231.125

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbChebi.Rcheck’
* using R Under development (unstable) (2024-01-16 r85808)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.9.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)