Back to Mac ARM64 build report for BioC 3.19 |
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This page was generated on 2024-05-07 11:32:38 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1303/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Jonathon Hill
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
To the developers/maintainers of the MMAPPR2 package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: MMAPPR2 |
Version: 1.18.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MMAPPR2 |
StartedAt: 2024-05-06 18:04:24 -0400 (Mon, 06 May 2024) |
EndedAt: 2024-05-06 18:04:48 -0400 (Mon, 06 May 2024) |
EllapsedTime: 24.2 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MMAPPR2 ### ############################################################################## ############################################################################## * checking for file ‘MMAPPR2/DESCRIPTION’ ... OK * preparing ‘MMAPPR2’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MMAPPR2.Rmd’ using rmarkdown running: bash -c "# Cooking show code to account for cases when samtools is not installed echo '#!/bin/bash' > /tmp/samtools chmod 755 /tmp/samtools" Quitting from lines at lines 95-118 [param] (MMAPPR2.Rmd) Error: processing vignette 'MMAPPR2.Rmd' failed with diagnostics: invalid class "VEPFlags" object: Ensembl >=88 requires vep script (not variant_effect_predictor.pl) --- failed re-building ‘MMAPPR2.Rmd’ SUMMARY: processing the following file failed: ‘MMAPPR2.Rmd’ Error: Vignette re-building failed. Execution halted