Back to Mac ARM64 build report for BioC 3.19 |
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This page was generated on 2024-05-07 11:32:40 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1449/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
OCplus 1.78.0 (landing page) Alexander Ploner
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the OCplus package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: OCplus |
Version: 1.78.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OCplus.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OCplus_1.78.0.tar.gz |
StartedAt: 2024-05-06 23:27:59 -0400 (Mon, 06 May 2024) |
EndedAt: 2024-05-06 23:28:26 -0400 (Mon, 06 May 2024) |
EllapsedTime: 27.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OCplus.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OCplus.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OCplus_1.78.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/OCplus.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘OCplus/DESCRIPTION’ ... OK * this is package ‘OCplus’ version ‘1.78.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘OCplus’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) DrawContourlines.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) DrawContourlines.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) DrawContourlines.Rd:22: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/OCplus.Rcheck/00check.log’ for details.
OCplus.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL OCplus ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘OCplus’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OCplus)
OCplus.Rcheck/OCplus-Ex.timings
name | user | system | elapsed | |
EOC | 0.116 | 0.027 | 0.153 | |
FDR | 0.001 | 0.000 | 0.001 | |
MAsim.smyth | 0.518 | 0.029 | 0.547 | |
OCshow | 0.315 | 0.060 | 0.375 | |
TOC | 0.049 | 0.015 | 0.065 | |
average.fdr | 0.353 | 0.050 | 0.404 | |
fdr1d | 0.367 | 0.031 | 0.398 | |
fdr2d | 0.179 | 0.025 | 0.204 | |
plot.FDR.result | 0.419 | 0.023 | 0.443 | |
plot.fdr1d.result | 0.268 | 0.028 | 0.297 | |
plot.fdr2d.result | 0.379 | 0.031 | 0.412 | |
samplesize | 1.029 | 0.127 | 1.162 | |
smooth1d | 0.006 | 0.003 | 0.009 | |
summary.fdr.result | 0.083 | 0.019 | 0.101 | |
tMixture | 0.376 | 0.099 | 0.475 | |