Back to Build/check report for BioC 3.19 experimental data
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2024-06-04 14:51:11 -0400 (Tue, 04 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4753
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 367/430HostnameOS / ArchINSTALLBUILDCHECK
Single.mTEC.Transcriptomes 1.32.0  (landing page)
Alejandro Reyes
Snapshot Date: 2024-06-04 07:30:01 -0400 (Tue, 04 Jun 2024)
git_url: https://git.bioconductor.org/packages/Single.mTEC.Transcriptomes
git_branch: RELEASE_3_19
git_last_commit: 5f3c26d
git_last_commit_date: 2024-04-30 10:45:35 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for Single.mTEC.Transcriptomes on nebbiolo1

To the developers/maintainers of the Single.mTEC.Transcriptomes package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Single.mTEC.Transcriptomes
Version: 1.32.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Single.mTEC.Transcriptomes
StartedAt: 2024-06-04 10:51:02 -0400 (Tue, 04 Jun 2024)
EndedAt: 2024-06-04 10:55:28 -0400 (Tue, 04 Jun 2024)
EllapsedTime: 266.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Single.mTEC.Transcriptomes
###
##############################################################################
##############################################################################


* checking for file ‘Single.mTEC.Transcriptomes/DESCRIPTION’ ... OK
* preparing ‘Single.mTEC.Transcriptomes’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘mTECs.Rnw’ using knitr
Error: processing vignette 'mTECs.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'mTECs.tex' failed.
LaTeX errors:
! Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Emergency stop.
 ...                                              
                                                  
l.93 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor}
                                                  \begin{kframe}
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘mTECs.Rnw’

SUMMARY: processing the following file failed:
  ‘mTECs.Rnw’

Error: Vignette re-building failed.
Execution halted