| Back to the "Multiple platform build/check report" | A [B] C D E F G H I J K L M N O P Q R S T U V W X Y Z |
This page was generated on 2015-08-24 10:54:30 -0700 (Mon, 24 Aug 2015).
| Package 120/1071 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| BrowserViz 1.1.7 Paul Shannon
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | |||||
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ ERROR ] | OK | ||||||
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | ERROR | OK |
| Package: BrowserViz |
| Version: 1.1.7 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings BrowserViz_1.1.7.tar.gz |
| StartedAt: 2015-08-23 22:43:28 -0700 (Sun, 23 Aug 2015) |
| EndedAt: 2015-08-23 22:44:54 -0700 (Sun, 23 Aug 2015) |
| EllapsedTime: 85.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: BrowserViz.Rcheck |
| Warnings: NA |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings BrowserViz_1.1.7.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/BrowserViz.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BrowserViz/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BrowserViz’ version ‘1.1.7’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BrowserViz’ can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘Rcpp’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'BrowserVizClass':
BrowserViz
Code: function(portRange, host = "localhost", title = "BrowserViz",
quiet = TRUE, browserFile = NA,
httpQueryProcessingFunction = NULL)
Docs: function(portRange, host = "localhost", title = "BrowserViz",
quiet = TRUE, browserFile = NA)
Argument names in code not in docs:
httpQueryProcessingFunction
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘BrowserViz-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BrowserVizClass
> ### Title: BrowserViz: a base class (for extension) and standalone example
> ### of R/Javascript interactive web browser visualization
> ### Aliases: BrowserViz class:BrowserVizClass BrowserVizClass-class
> ### show,BrowserVizClass-method setBrowserWindowTitle
> ### setBrowserWindowTitle,BrowserVizClass-method
> ### \S4method{setBrowserWindowTitle}{BrowserVizClass}
> ### getBrowserWindowSize getBrowserWindowSize,BrowserVizClass-method
> ### \S4method{getBrowserWindowSize}{BrowserVizClass}
> ### getBrowserWindowTitle getBrowserWindowTitle,BrowserVizClass-method
> ### \S4method{getBrowserWindowTitle}{BrowserVizClass}
> ### browserResponseReady browserResponseReady,BrowserVizClass-method
> ### \S4method{browserResponseReady}{BrowserVizClass} getBrowserResponse
> ### getBrowserResponse,BrowserVizClass-method
> ### \S4method{getBrowserResponse}{BrowserVizClass} port
> ### port,BrowserVizClass-method \S4method{port}{BrowserVizClass}
> ### closeWebSocket closeWebSocket,BrowserVizClass-method
> ### \S4method{closeWebSocket}{BrowserVizClass} getBrowserInfo
> ### getBrowserInfo,BrowserVizClass-method
> ### \S4method{getBrowserInfo}{BrowserVizClass} send
> ### send,BrowserVizClass-method \S4method{send}{BrowserVizClass} ready
> ### ready,BrowserVizClass-method \S4method{ready}{BrowserVizClass} toJSON
> ### addRMessageHandler
> ### Keywords: classes methods
>
> ### ** Examples
>
> library(BrowserViz)
>
> bv <- BrowserViz(4000:4024)
[1] entering BrowserViz ready
[1] entering BrowserViz ready
LSOpenURLsWithRole() failed with error -10810 for the URL http://localhost:4000.
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Error: totalWait < maxWaitPermitted is not TRUE
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’ [2s/42s]
ERROR
Running the tests in ‘tests/runTests.R’ failed.
Last 13 lines of output:
Test files with failing tests
test_BrowserViz.R
testConstructor
testGetBrowserInfo
testGetWindowSize
testMultipleOpenCloseOnSamePort
testWindowTitle
Error in BiocGenerics:::testPackage("BrowserViz") :
unit tests failed for package BrowserViz
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs, 1 WARNING, 2 NOTEs
See
‘/Users/biocbuild/bbs-3.2-bioc/meat/BrowserViz.Rcheck/00check.log’
for details.
BrowserViz.Rcheck/tests/runTests.Rout.fail:
R version 3.2.2 Patched (2015-08-14 r69078) -- "Fire Safety"
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin10.8.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("BrowserViz")
Attaching package: 'jsonlite'
The following object is masked from 'package:utils':
View
Attaching package: 'BrowserViz'
The following object is masked from 'package:jsonlite':
toJSON
[1] "--- testConstructor"
BrowserViz constructor starting with html file '/Users/biocbuild/bbs-3.2-bioc/meat/BrowserViz.Rcheck/BrowserViz/scripts/viz.html'
html file exists? TRUE
summoning default browser to get http://localhost:7200
[1] --- entering BrowserViz .setupWebSocketHandlers
[1] browserFile: /Users/biocbuild/bbs-3.2-bioc/meat/BrowserViz.Rcheck/BrowserViz/scripts/viz.html
starting daemonized server on port 7200
[1] entering BrowserViz ready
BrowserViz websocket not ready, waiting 0.10 seconds
LSOpenURLsWithRole() failed with error -10810 for the URL http://localhost:7200.
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Timing stopped at: 0.095 0.015 10.12
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- testGetBrowserInfo"
BrowserViz constructor starting with html file '/Users/biocbuild/bbs-3.2-bioc/meat/BrowserViz.Rcheck/BrowserViz/scripts/viz.html'
html file exists? TRUE
summoning default browser to get http://localhost:7201
[1] --- entering BrowserViz .setupWebSocketHandlers
[1] browserFile: /Users/biocbuild/bbs-3.2-bioc/meat/BrowserViz.Rcheck/BrowserViz/scripts/viz.html
starting daemonized server on port 7201
[1] entering BrowserViz ready
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LSOpenURLsWithRole() failed with error -10810 for the URL http://localhost:7201.
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BrowserViz websocket not ready, waiting 0.10 seconds
[1] entering BrowserViz ready
Timing stopped at: 0.084 0.013 10.099
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- testGetWindowSize"
[1] entering BrowserViz ready
LSOpenURLsWithRole() failed with error -10810 for the URL http://localhost:7202.
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Timing stopped at: 0.039 0.012 10.053
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- testMultipleOpenCloseOnSamePort"
Timing stopped at: 0.003 0 0.002
Error in BrowserViz(PORT_RANGE[1]) :
no available ports in range 7200:7200
[1] "--- testRunOutOfPorts"
[1] "--- testWindowTitle"
[1] entering BrowserViz ready
LSOpenURLsWithRole() failed with error -10810 for the URL http://localhost:7203.
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Timing stopped at: 0.04 0.011 10.053
Error : totalWait < maxWaitPermitted is not TRUE
RUNIT TEST PROTOCOL -- Sun Aug 23 22:44:49 2015
***********************************************
Number of test functions: 6
Number of errors: 5
Number of failures: 0
1 Test Suite :
BrowserViz RUnit Tests - 6 test functions, 5 errors, 0 failures
ERROR in testConstructor: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in testGetBrowserInfo: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in testGetWindowSize: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in testMultipleOpenCloseOnSamePort: Error in BrowserViz(PORT_RANGE[1]) :
no available ports in range 7200:7200
ERROR in testWindowTitle: Error : totalWait < maxWaitPermitted is not TRUE
Test files with failing tests
test_BrowserViz.R
testConstructor
testGetBrowserInfo
testGetWindowSize
testMultipleOpenCloseOnSamePort
testWindowTitle
Error in BiocGenerics:::testPackage("BrowserViz") :
unit tests failed for package BrowserViz
Execution halted
BrowserViz.Rcheck/00install.out:
* installing *source* package ‘BrowserViz’ ... ** R ** inst ** preparing package for lazy loading Note: the specification for S3 class “AsIs” in package ‘BiocGenerics’ seems equivalent to one from package ‘jsonlite’: not turning on duplicate class definitions for this class. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Note: the specification for S3 class “AsIs” in package ‘BiocGenerics’ seems equivalent to one from package ‘jsonlite’: not turning on duplicate class definitions for this class. * DONE (BrowserViz)
BrowserViz.Rcheck/BrowserViz-Ex.timings:
| name | user | system | elapsed |