##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf CoGAPS.buildbin-libdir && mkdir CoGAPS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CoGAPS_2.3.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CoGAPS.buildbin-libdir
###
##############################################################################
##############################################################################
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CoGAPS.buildbin-libdir CoGAPS_2.3.3.tar.gz'
>>>>>>>
* installing *source* package ‘CoGAPS’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -Wall -c AtomicSupport.cc -o AtomicSupport.o
AtomicSupport.cc: In member function ‘void gaps::AtomicSupport::FixedBins_initializeAtomic(unsigned int, long long unsigned int, double, double, char, const char*)’:
AtomicSupport.cc:143: warning: comparison between signed and unsigned integer expressions
AtomicSupport.cc: In member function ‘void gaps::AtomicSupport::FixedBins_initializeAtomic(unsigned int, long long unsigned int, double, double, char, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >)’:
AtomicSupport.cc:218: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -Wall -c GAPSNorm.cpp -o GAPSNorm.o
GAPSNorm.cpp: In static member function ‘static double gaps::GAPSNorm::calChi2(const double* const*, const double* const*, const double* const*, const double* const*, unsigned int, unsigned int, unsigned int)’:
GAPSNorm.cpp:72: warning: comparison between signed and unsigned integer expressions
GAPSNorm.cpp:86: warning: comparison between signed and unsigned integer expressions
GAPSNorm.cpp: In static member function ‘static std::pair<double, double> gaps::GAPSNorm::calcAlphaParameters(char, unsigned int, unsigned int, unsigned int, const double* const*, const double* const*, double**, double**, unsigned int, unsigned int, unsigned int, unsigned int, unsigned int, unsigned int)’:
GAPSNorm.cpp:623: warning: comparison between signed and unsigned integer expressions
GAPSNorm.cpp:626: warning: comparison between signed and unsigned integer expressions
GAPSNorm.cpp:639: warning: comparison between signed and unsigned integer expressions
GAPSNorm.cpp:643: warning: comparison between signed and unsigned integer expressions
GAPSNorm.cpp:665: warning: comparison between signed and unsigned integer expressions
GAPSNorm.cpp:668: warning: comparison between signed and unsigned integer expressions
GAPSNorm.cpp:680: warning: comparison between signed and unsigned integer expressions
GAPSNorm.cpp:684: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -Wall -c GibbsSampler.cpp -o GibbsSampler.o
GibbsSampler.cpp: In member function ‘std::vector<std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >, std::allocator<std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > > > GibbsSampler::getNormedMatrices()’:
GibbsSampler.cpp:511: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:513: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:521: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:522: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:527: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:528: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp: In member function ‘std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > GibbsSampler::createSampleAMat(std::map<long long unsigned int, double, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, double> > >)’:
GibbsSampler.cpp:560: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp: In member function ‘std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > GibbsSampler::createSamplePMat(std::map<long long unsigned int, double, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, double> > >)’:
GibbsSampler.cpp:580: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp: In member function ‘void GibbsSampler::compute_statistics_prepare_matrices(long unsigned int)’:
GibbsSampler.cpp:2036: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2038: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2051: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2053: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2054: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2060: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2062: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2063: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2069: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2071: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2072: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2078: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2080: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2081: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2091: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2092: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2097: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2098: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2103: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2104: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2109: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2110: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp: In member function ‘void GibbsSampler::compute_statistics(char*, char*, char*, char*, char*, char*, unsigned int)’:
GibbsSampler.cpp:2127: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2128: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2133: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2134: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2140: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2141: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2146: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2147: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2155: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp: In member function ‘void GibbsSampler::compute_statistics(unsigned int, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&)’:
GibbsSampler.cpp:2234: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2239: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2244: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2249: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2260: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2261: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2267: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2268: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2276: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2277: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2284: warning: comparison between signed and unsigned integer expressions
GibbsSampler.cpp:2285: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -Wall -c GibbsSamplerMap.cpp -o GibbsSamplerMap.o
GibbsSamplerMap.cpp: In constructor ‘GibbsSamplerMap::GibbsSamplerMap(long unsigned int, long unsigned int, unsigned int, double, double, double, double, long unsigned int, long unsigned int, double, double, long long unsigned int, char, char, char, char, const std::string&, const std::string&, const std::string&, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, char)’:
GibbsSamplerMap.cpp:48: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp:52: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp:55: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp: In constructor ‘GibbsSamplerMap::GibbsSamplerMap(long unsigned int, long unsigned int, unsigned int, double, double, double, double, long unsigned int, long unsigned int, double, double, long long unsigned int, char, char, char, char, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, const std::string&, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, char)’:
GibbsSamplerMap.cpp:79: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp:83: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp:86: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp: In member function ‘void GibbsSamplerMap::init_Mapped_Matrix()’:
GibbsSamplerMap.cpp:111: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp:117: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp: In member function ‘void GibbsSamplerMap::initialize_atomic_domain_map()’:
GibbsSamplerMap.cpp:140: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp:144: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp:161: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp:167: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp: In member function ‘std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > GibbsSamplerMap::createSampleAMatMap(std::map<long long unsigned int, double, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, double> > >)’:
GibbsSamplerMap.cpp:520: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp:540: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp: In member function ‘std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > GibbsSamplerMap::createSamplePMatMap(std::map<long long unsigned int, double, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, double> > >)’:
GibbsSamplerMap.cpp:556: warning: comparison between signed and unsigned integer expressions
GibbsSamplerMap.cpp:577: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -Wall -c Matrix.cpp -o Matrix.o
Matrix.cpp: In constructor ‘Matrix::Matrix(unsigned int, unsigned int, char, double)’:
Matrix.cpp:44: warning: comparison between signed and unsigned integer expressions
Matrix.cpp: In constructor ‘Matrix::Matrix(std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, char)’:
Matrix.cpp:59: warning: comparison between signed and unsigned integer expressions
Matrix.cpp:62: warning: comparison between signed and unsigned integer expressions
Matrix.cpp:63: warning: comparison between signed and unsigned integer expressions
Matrix.cpp: In constructor ‘Matrix::Matrix(const char*, char)’:
Matrix.cpp:90: warning: comparison between signed and unsigned integer expressions
Matrix.cpp:94: warning: comparison between signed and unsigned integer expressions
Matrix.cpp:95: warning: comparison between signed and unsigned integer expressions
Matrix.cpp: In destructor ‘Matrix::˜Matrix()’:
Matrix.cpp:103: warning: comparison between signed and unsigned integer expressions
Matrix.cpp: In member function ‘void Matrix::born_matrix(unsigned int, unsigned int, char, double)’:
Matrix.cpp:122: warning: comparison between signed and unsigned integer expressions
Matrix.cpp: In member function ‘void Matrix::matrix_init()’:
Matrix.cpp:134: warning: comparison between signed and unsigned integer expressions
Matrix.cpp:135: warning: comparison between signed and unsigned integer expressions
Matrix.cpp: In member function ‘void Matrix::setRow(std::vector<double, std::allocator<double> >, int)’:
Matrix.cpp:160: warning: comparison between signed and unsigned integer expressions
Matrix.cpp: In member function ‘void Matrix::setCol(std::vector<double, std::allocator<double> >, int)’:
Matrix.cpp:168: warning: comparison between signed and unsigned integer expressions
Matrix.cpp: In member function ‘std::vector<double, std::allocator<double> > Matrix::get_Row(int)’:
Matrix.cpp:182: warning: comparison between signed and unsigned integer expressions
Matrix.cpp: In member function ‘std::vector<double, std::allocator<double> > Matrix::get_Col(int)’:
Matrix.cpp:190: warning: comparison between signed and unsigned integer expressions
Matrix.cpp: In member function ‘double Matrix::cal_mean() const’:
Matrix.cpp:238: warning: comparison between signed and unsigned integer expressions
Matrix.cpp:239: warning: comparison between signed and unsigned integer expressions
Matrix.cpp: In member function ‘double Matrix::cal_totalsum() const’:
Matrix.cpp:249: warning: comparison between signed and unsigned integer expressions
Matrix.cpp:250: warning: comparison between signed and unsigned integer expressions
Matrix.cpp: In member function ‘void Matrix::display_matrixF(std::ofstream&)’:
Matrix.cpp:313: warning: comparison between signed and unsigned integer expressions
Matrix.cpp:314: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -Wall -c cogapsR.cpp -o cogapsR.o
cogapsR.cpp: In function ‘Rcpp::List cogaps(Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::CharacterVector, Rcpp::NumericVector)’:
cogapsR.cpp:442: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -Wall -c cogapsmapR.cpp -o cogapsmapR.o
cogapsmapR.cpp: In function ‘Rcpp::List cogapsMap(Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::CharacterVector, Rcpp::NumericVector)’:
cogapsmapR.cpp:401: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -Wall -c cogapsmaptestR.cpp -o cogapsmaptestR.o
cogapsmaptestR.cpp: In function ‘Rcpp::List cogapsMapTest(Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::CharacterVector, Rcpp::NumericVector)’:
cogapsmaptestR.cpp:481: warning: comparison between signed and unsigned integer expressions
cogapsmaptestR.cpp:598: warning: comparison between signed and unsigned integer expressions
cogapsmaptestR.cpp:607: warning: comparison between signed and unsigned integer expressions
cogapsmaptestR.cpp:699: warning: comparison between signed and unsigned integer expressions
cogapsmaptestR.cpp:715: warning: comparison between signed and unsigned integer expressions
cogapsmaptestR.cpp:731: warning: comparison between signed and unsigned integer expressions
cogapsmaptestR.cpp:747: warning: comparison between signed and unsigned integer expressions
cogapsmaptestR.cpp:776: warning: comparison between signed and unsigned integer expressions
cogapsmaptestR.cpp:791: warning: comparison between signed and unsigned integer expressions
cogapsmaptestR.cpp:806: warning: comparison between signed and unsigned integer expressions
cogapsmaptestR.cpp:821: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -Wall -c cogapstestR.cpp -o cogapstestR.o
cogapstestR.cpp: In function ‘Rcpp::List cogapsTest(Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::CharacterVector, Rcpp::NumericVector)’:
cogapstestR.cpp:509: warning: comparison between signed and unsigned integer expressions
cogapstestR.cpp:634: warning: comparison between signed and unsigned integer expressions
cogapstestR.cpp:643: warning: comparison between signed and unsigned integer expressions
cogapstestR.cpp:733: warning: comparison between signed and unsigned integer expressions
cogapstestR.cpp:749: warning: comparison between signed and unsigned integer expressions
cogapstestR.cpp:765: warning: comparison between signed and unsigned integer expressions
cogapstestR.cpp:781: warning: comparison between signed and unsigned integer expressions
cogapstestR.cpp:809: warning: comparison between signed and unsigned integer expressions
cogapstestR.cpp:824: warning: comparison between signed and unsigned integer expressions
cogapstestR.cpp:839: warning: comparison between signed and unsigned integer expressions
cogapstestR.cpp:854: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -Wall -c randgen.cpp -o randgen.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -Wall -c sub_func.cpp -o sub_func.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o CoGAPS.so AtomicSupport.o GAPSNorm.o GibbsSampler.o GibbsSamplerMap.o Matrix.o RcppExports.o cogapsR.o cogapsmapR.o cogapsmaptestR.o cogapstestR.o randgen.o sub_func.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/CoGAPS.buildbin-libdir/CoGAPS/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CoGAPS)
>>>>>>>
>>>>>>> FIXING LINKS FOR CoGAPS.buildbin-libdir/CoGAPS/libs//CoGAPS.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "CoGAPS.buildbin-libdir/CoGAPS/libs//CoGAPS.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "CoGAPS.buildbin-libdir/CoGAPS/libs//CoGAPS.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "CoGAPS.buildbin-libdir/CoGAPS/libs//CoGAPS.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "CoGAPS.buildbin-libdir/CoGAPS/libs//CoGAPS.so"
