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BioC 3.2: BUILD report for RCyjs on perceval

This page was generated on 2015-08-24 10:54:39 -0700 (Mon, 24 Aug 2015).

Package 830/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCyjs 1.1.23
Paul Shannon
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RCyjs
Last Changed Rev: 107696 / Revision: 107696
Last Changed Date: 2015-08-23 15:30:37 -0700 (Sun, 23 Aug 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS YES, new version is higher than in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded [ ERROR ] skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: RCyjs
Version: 1.1.23
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RCyjs
StartedAt: 2015-08-23 21:22:03 -0700 (Sun, 23 Aug 2015)
EndedAt: 2015-08-23 21:22:22 -0700 (Sun, 23 Aug 2015)
EllapsedTime: 18.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RCyjs
###
##############################################################################
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* checking for file ‘RCyjs/DESCRIPTION’ ... OK
* preparing ‘RCyjs’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: BrowserViz
Loading required package: Rcpp
Loading required package: jsonlite

Attaching package: ‘jsonlite’

The following object is masked from ‘package:utils’:

    View

Loading required package: httpuv
Note: the specification for S3 class “AsIs” in package ‘BiocGenerics’ seems equivalent to one from package ‘jsonlite’: not turning on duplicate class definitions for this class.

Attaching package: ‘BrowserViz’

The following object is masked from ‘package:jsonlite’:

    toJSON

Loading required package: graph
Warning: replacing previous import by ‘graph::.__C__dist’ when loading ‘RCyjs’

Attaching package: ‘RCyjs’

The following object is masked from ‘package:graphics’:

    layout

LSOpenURLsWithRole() failed with error -10810 for the URL http://localhost:9047.

Error: processing vignette 'RCyjs.Rnw' failed with diagnostics:
 chunk 3 (label = simpleRender) 
Error : totalWait < maxWaitPermitted is not TRUE
Execution halted