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BioC 3.2: BUILD BIN report for TurboNorm on oaxaca

This page was generated on 2015-08-24 10:56:30 -0700 (Mon, 24 Aug 2015).

Package 1040/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TurboNorm 1.17.0
Maarten van Iterson
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/TurboNorm
Last Changed Rev: 102594 / Revision: 107696
Last Changed Date: 2015-04-16 13:02:44 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: TurboNorm
Version: 1.17.0
Command: rm -rf TurboNorm.buildbin-libdir && mkdir TurboNorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TurboNorm_1.17.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R TurboNorm.buildbin-libdir
StartedAt: 2015-08-24 05:36:08 -0700 (Mon, 24 Aug 2015)
EndedAt: 2015-08-24 05:36:14 -0700 (Mon, 24 Aug 2015)
EllapsedTime: 5.9 seconds
RetCode: 0
Status:  OK 
PackageFile: TurboNorm_1.17.0.tgz
PackageFileSize: 653.8 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf TurboNorm.buildbin-libdir && mkdir TurboNorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TurboNorm_1.17.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R TurboNorm.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=TurboNorm.buildbin-libdir TurboNorm_1.17.0.tar.gz'
>>>>>>> 

* installing *source* package ‘TurboNorm’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c Rinit.c -o Rinit.o
Rinit.c:11:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
  NULL
  ^˜˜˜
  {   }
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stddef.h:77:16: note: expanded from macro 'NULL'
#  define NULL ((void*)0)
               ^˜˜˜˜˜˜˜˜˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c binners.c -o binners.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o TurboNorm.so Rinit.o binners.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/TurboNorm.buildbin-libdir/TurboNorm/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (TurboNorm)


>>>>>>> 
>>>>>>> FIXING LINKS FOR TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"