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BioC 3.2: BUILD report for clipper on perceval

This page was generated on 2015-08-24 10:53:03 -0700 (Mon, 24 Aug 2015).

Package 179/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
clipper 1.9.1
Paolo Martini
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/clipper
Last Changed Rev: 105931 / Revision: 107696
Last Changed Date: 2015-07-09 04:00:54 -0700 (Thu, 09 Jul 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  ERROR  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ ERROR ] skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: clipper
Version: 1.9.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data clipper
StartedAt: 2015-08-23 19:39:19 -0700 (Sun, 23 Aug 2015)
EndedAt: 2015-08-23 19:40:17 -0700 (Sun, 23 Aug 2015)
EllapsedTime: 57.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data clipper
###
##############################################################################
##############################################################################


* checking for file ‘clipper/DESCRIPTION’ ... OK
* preparing ‘clipper’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall,
    clusterEvalQ, clusterExport, clusterMap,
    parApply, parCapply, parLapply, parLapplyLB,
    parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, xtabs

The following objects are masked from ‘package:base’:

    anyDuplicated, append, as.data.frame, as.vector,
    cbind, colnames, do.call, duplicated, eval,
    evalq, Filter, Find, get, grep, grepl, intersect,
    is.unsorted, lapply, Map, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int,
    Position, rank, rbind, Reduce, rep.int, rownames,
    sapply, setdiff, sort, table, tapply, union,
    unique, unlist, unsplit


Loading required package: Matrix

Attaching package: ‘Matrix’

The following object is masked from ‘package:IRanges’:

    expand


Error: processing vignette 'clipper.Rnw' failed with diagnostics:
 chunk 11 (label = pathQUsage) 
Error in moralize.default(graph) : Graph must be directed
Execution halted