Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.2: CHECK report for miRLAB on moscato1

This page was generated on 2015-08-20 13:24:25 -0700 (Thu, 20 Aug 2015).

Package 629/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRLAB 0.99.3
Thuc Duy Le
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/miRLAB
Last Changed Rev: 107185 / Revision: 107602
Last Changed Date: 2015-08-05 19:05:37 -0700 (Wed, 05 Aug 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: miRLAB
Version: 0.99.3
Command: rm -rf miRLAB.buildbin-libdir miRLAB.Rcheck && mkdir miRLAB.buildbin-libdir miRLAB.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRLAB.buildbin-libdir miRLAB_0.99.3.tar.gz >miRLAB.Rcheck\00install.out 2>&1 && cp miRLAB.Rcheck\00install.out miRLAB-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=miRLAB.buildbin-libdir --install="check:miRLAB-install.out" --force-multiarch --no-vignettes --timings miRLAB_0.99.3.tar.gz
StartedAt: 2015-08-20 07:19:59 -0700 (Thu, 20 Aug 2015)
EndedAt: 2015-08-20 07:25:39 -0700 (Thu, 20 Aug 2015)
EllapsedTime: 340.4 seconds
RetCode: 0
Status:  OK  
CheckDir: miRLAB.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf miRLAB.buildbin-libdir miRLAB.Rcheck && mkdir miRLAB.buildbin-libdir miRLAB.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRLAB.buildbin-libdir miRLAB_0.99.3.tar.gz >miRLAB.Rcheck\00install.out 2>&1 && cp miRLAB.Rcheck\00install.out miRLAB-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=miRLAB.buildbin-libdir --install="check:miRLAB-install.out" --force-multiarch --no-vignettes --timings miRLAB_0.99.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/miRLAB.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'miRLAB/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'miRLAB' version '0.99.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'miRLAB' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [10s] OK
** running examples for arch 'x64' ... [12s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [9s]
 [9s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [10s]
 [10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

miRLAB.Rcheck/00install.out:


install for i386

* installing *source* package 'miRLAB' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'miRLAB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'miRLAB' as miRLAB_0.99.3.zip
* DONE (miRLAB)

miRLAB.Rcheck/examples_i386/miRLAB-Ex.timings:

nameusersystemelapsed
Borda0.110.000.11
BordaTopk0.090.020.11
Dcov0.060.010.07
Elastic0.080.000.08
Extopk0.010.000.01
GOBPenrichment000
Hoeffding0.070.000.07
IDA0.140.000.14
ImputeNormData0.010.000.01
KEGGenrichment000
Kendall0.020.000.02
Lasso0.070.000.07
MI0.120.000.12
Pearson0.020.000.02
ProMISe0.030.000.03
RDC0.140.000.14
Read0.010.000.01
Spearman000
Standardise000
ValidateAll000
Validation0.010.000.01
ValidationT000
Zscore0.020.000.02
bRank0.010.000.01
filterAndCompare000
getData000
readHeader000

miRLAB.Rcheck/examples_x64/miRLAB-Ex.timings:

nameusersystemelapsed
Borda0.110.000.11
BordaTopk0.080.000.08
Dcov0.470.000.47
Elastic0.120.000.12
Extopk0.020.000.02
GOBPenrichment000
Hoeffding0.060.000.06
IDA0.110.000.11
ImputeNormData0.000.020.02
KEGGenrichment000
Kendall0.010.000.02
Lasso0.100.000.09
MI0.090.000.10
Pearson000
ProMISe0.040.000.03
RDC0.090.000.10
Read000
Spearman0.010.000.02
Standardise000
ValidateAll000
Validation0.010.000.02
ValidationT000
Zscore0.020.000.01
bRank0.010.000.02
filterAndCompare000
getData000
readHeader000