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BioC 3.2: CHECK report for CNORfeeder on moscato1

This page was generated on 2015-08-20 13:21:30 -0700 (Thu, 20 Aug 2015).

Package 193/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNORfeeder 1.9.2
F.Eduati
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CNORfeeder
Last Changed Rev: 107490 / Revision: 107602
Last Changed Date: 2015-08-16 09:03:05 -0700 (Sun, 16 Aug 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK YES, new version is higher than in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CNORfeeder
Version: 1.9.2
Command: rm -rf CNORfeeder.buildbin-libdir CNORfeeder.Rcheck && mkdir CNORfeeder.buildbin-libdir CNORfeeder.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CNORfeeder.buildbin-libdir CNORfeeder_1.9.2.tar.gz >CNORfeeder.Rcheck\00install.out 2>&1 && cp CNORfeeder.Rcheck\00install.out CNORfeeder-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=CNORfeeder.buildbin-libdir --install="check:CNORfeeder-install.out" --force-multiarch --no-vignettes --timings CNORfeeder_1.9.2.tar.gz
StartedAt: 2015-08-20 02:52:24 -0700 (Thu, 20 Aug 2015)
EndedAt: 2015-08-20 02:54:22 -0700 (Thu, 20 Aug 2015)
EllapsedTime: 118.1 seconds
RetCode: 0
Status:  OK  
CheckDir: CNORfeeder.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CNORfeeder.buildbin-libdir CNORfeeder.Rcheck && mkdir CNORfeeder.buildbin-libdir CNORfeeder.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CNORfeeder.buildbin-libdir CNORfeeder_1.9.2.tar.gz >CNORfeeder.Rcheck\00install.out 2>&1 && cp CNORfeeder.Rcheck\00install.out CNORfeeder-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=CNORfeeder.buildbin-libdir --install="check:CNORfeeder-install.out" --force-multiarch --no-vignettes --timings CNORfeeder_1.9.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/CNORfeeder.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CNORfeeder/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CNORfeeder' version '1.9.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CNORfeeder' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [12s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
Binference 0.82   0.02    5.36
** running examples for arch 'x64' ... [12s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [5s]
 [5s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [4s]
 [4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

CNORfeeder.Rcheck/00install.out:


install for i386

* installing *source* package 'CNORfeeder' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'CNORfeeder' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNORfeeder' as CNORfeeder_1.9.2.zip
* DONE (CNORfeeder)

CNORfeeder.Rcheck/examples_i386/CNORfeeder-Ex.timings:

nameusersystemelapsed
Binference0.820.025.36
CNORfeeder-package0.750.010.79
MIinference0.400.000.41
gaBinaryT1W0.720.000.72
linksRanking0.050.000.04
makeBTables0.030.000.04
mapBTables2model0.970.000.96
mapDDN2model0.040.030.08
weighting1.000.000.99

CNORfeeder.Rcheck/examples_x64/CNORfeeder-Ex.timings:

nameusersystemelapsed
Binference0.320.034.94
CNORfeeder-package0.870.000.88
MIinference0.580.000.58
gaBinaryT1W1.20.01.2
linksRanking0.090.010.11
makeBTables0.060.000.06
mapBTables2model0.880.000.87
mapDDN2model0.040.000.05
weighting0.690.000.69