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BioC 3.2: CHECK report for MethylMix on moscato1

This page was generated on 2015-08-20 13:23:06 -0700 (Thu, 20 Aug 2015).

Package 611/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MethylMix 1.3.0
Olivier Gevaert
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MethylMix
Last Changed Rev: 102594 / Revision: 107602
Last Changed Date: 2015-04-16 13:02:44 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MethylMix
Version: 1.3.0
Command: rm -rf MethylMix.buildbin-libdir MethylMix.Rcheck && mkdir MethylMix.buildbin-libdir MethylMix.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MethylMix.buildbin-libdir MethylMix_1.3.0.tar.gz >MethylMix.Rcheck\00install.out 2>&1 && cp MethylMix.Rcheck\00install.out MethylMix-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=MethylMix.buildbin-libdir --install="check:MethylMix-install.out" --force-multiarch --no-vignettes --timings MethylMix_1.3.0.tar.gz
StartedAt: 2015-08-20 07:02:27 -0700 (Thu, 20 Aug 2015)
EndedAt: 2015-08-20 07:07:47 -0700 (Thu, 20 Aug 2015)
EllapsedTime: 319.2 seconds
RetCode: 0
Status:  OK  
CheckDir: MethylMix.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MethylMix.buildbin-libdir MethylMix.Rcheck && mkdir MethylMix.buildbin-libdir MethylMix.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MethylMix.buildbin-libdir MethylMix_1.3.0.tar.gz >MethylMix.Rcheck\00install.out 2>&1 && cp MethylMix.Rcheck\00install.out MethylMix-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=MethylMix.buildbin-libdir --install="check:MethylMix-install.out" --force-multiarch --no-vignettes --timings MethylMix_1.3.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/MethylMix.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MethylMix/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MethylMix' version '1.3.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MethylMix' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [138s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
MethylMix           93.45   0.01   93.49
MethylMix_PlotModel 44.13   0.02   44.15
** running examples for arch 'x64' ... [135s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
MethylMix           88.01   0.00   88.01
MethylMix_PlotModel 46.01   0.02   46.02
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-bioc/meat/MethylMix.Rcheck/00check.log'
for details.


MethylMix.Rcheck/00install.out:


install for i386

* installing *source* package 'MethylMix' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MethylMix' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MethylMix' as MethylMix_1.3.0.zip
* DONE (MethylMix)

MethylMix.Rcheck/examples_i386/MethylMix-Ex.timings:

nameusersystemelapsed
MethylMix93.45 0.0193.49
MethylMix_PlotModel44.13 0.0244.15

MethylMix.Rcheck/examples_x64/MethylMix-Ex.timings:

nameusersystemelapsed
MethylMix88.01 0.0088.01
MethylMix_PlotModel46.01 0.0246.02