BioC 3.2: CHECK report for Prize on oaxaca

Package: Prize

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings Prize_1.0.0.tar.gz

StartedAt: 2015-10-27 06:41:33 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 06:43:28 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 115.9 seconds

RetCode: 0

Status:  OK

CheckDir: Prize.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings Prize_1.0.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/Prize.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Prize/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Prize’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Prize’ can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [66s/68s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
Prize-package       9.175  0.042   9.250
gaggregate          5.823  0.014   5.839
saaty_inconsistency 5.273  0.035   5.313
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’ [13s/13s]
 [13s/13s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘Prize’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Prize)

name	user	system	elapsed
AIJ	3.348	0.010	3.361
AIP	2.019	0.004	2.024
CI	2.811	0.009	2.820
GCR	1.941	0.003	1.943
ICR	3.120	0.005	3.301
IP	3.467	0.003	3.470
Prize-package	9.175	0.042	9.250
RM	0.539	0.001	0.540
ahmatrix	0.002	0.000	0.001
ahp	0.324	0.000	0.324
ahp_matrix	0.001	0.000	0.002
ahp_plot	3.191	0.036	3.228
ahp_weights	3.308	0.035	3.344
ahplot	0.023	0.001	0.025
crplot	0.221	0.002	0.229
dplot	0.143	0.001	0.164
gaggregate	5.823	0.014	5.839
pipeline	4.036	0.030	4.068
rainbow_plot	4.439	0.033	4.515
rainbowplot	0.250	0.001	0.251
rating	1.125	0.002	1.129
saaty_inconsistency	5.273	0.035	5.313
simulation	4.230	0.030	4.264
weight	1.222	0.003	1.227
weight_plot	4.231	0.036	4.270
wplot	0.430	0.002	0.433