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BioC 3.2: BUILD BIN report for makecdfenv on perceval

This page was generated on 2015-10-27 17:32:44 -0400 (Tue, 27 Oct 2015).

Package 586/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
makecdfenv 1.46.0
James W. MacDonald
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/makecdfenv
Last Changed Rev: 109589 / Revision: 109947
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: makecdfenv
Version: 1.46.0
Command: rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh makecdfenv_1.46.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R makecdfenv.buildbin-libdir
StartedAt: 2015-10-27 11:58:14 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 11:58:51 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 36.8 seconds
RetCode: 0
Status:  OK 
PackageFile: makecdfenv_1.46.0.tgz
PackageFileSize: 3.205 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh makecdfenv_1.46.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R makecdfenv.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=makecdfenv.buildbin-libdir makecdfenv_1.46.0.tar.gz'
>>>>>>> 

* installing *source* package ‘makecdfenv’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DHAVE_ZLIB=1  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c read_cdffile.c -o read_cdffile.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o makecdfenv.so read_cdffile.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/makecdfenv.buildbin-libdir/makecdfenv/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (makecdfenv)


>>>>>>> 
>>>>>>> FIXING LINKS FOR makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"