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BioC 3.2: INSTALL report for flowCore on windows1.bioconductor.org

This page was generated on 2015-10-27 17:28:14 -0400 (Tue, 27 Oct 2015).

Package 354/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowCore 1.36.0
M.Jiang
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/flowCore
Last Changed Rev: 109589 / Revision: 109947
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  ERROR  skipped 
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 [ OK ] ERROR  skipped  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: flowCore
Version: 1.36.0
Command: C:\cygwin64\bin\curl.exe -O http://linux1.bioconductor.org/BBS/3.2/bioc/src/contrib/flowCore_1.36.0.tar.gz && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch flowCore_1.36.0.tar.gz && rm flowCore_1.36.0.tar.gz
StartedAt: 2015-10-26 20:04:10 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 20:05:46 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 96.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin64\bin\curl.exe -O http://linux1.bioconductor.org/BBS/3.2/bioc/src/contrib/flowCore_1.36.0.tar.gz && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch flowCore_1.36.0.tar.gz && rm flowCore_1.36.0.tar.gz
###
##############################################################################
##############################################################################


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100 7923k  100 7923k    0     0   185M      0 --:--:-- --:--:-- --:--:--  203M

install for i386

* installing to library 'C:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'flowCore' ...
** libs
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c FastLogicle.cpp -o FastLogicle.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c Hyperlog.cpp -o Hyperlog.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c Logicle.cpp -o Logicle.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
gcc -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c biexponential.c -o biexponential.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c fcsTextParse.cpp -o fcsTextParse.o
fcsTextParse.cpp:44:80: warning: multi-line comment [-Wcomment]
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c hyperlogTransform.cpp -o hyperlogTransform.o
gcc -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c inPolygon.c -o inPolygon.o
gcc -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c inPolytope.c -o inPolytope.o
gcc -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c logicleTransform.cpp -o logicleTransform.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c pairVectorRcppWrap.cpp -o pairVectorRcppWrap.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c uint2double.cpp -o uint2double.o
gcc -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c zeroin.c -o zeroin.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/c_regex_traits.cpp -o boost_regex/c_regex_traits.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/cpp_regex_traits.cpp -o boost_regex/cpp_regex_traits.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/cregex.cpp -o boost_regex/cregex.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/fileiter.cpp -o boost_regex/fileiter.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/icu.cpp -o boost_regex/icu.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/instances.cpp -o boost_regex/instances.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/posix_api.cpp -o boost_regex/posix_api.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/regex.cpp -o boost_regex/regex.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/regex_debug.cpp -o boost_regex/regex_debug.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/regex_raw_buffer.cpp -o boost_regex/regex_raw_buffer.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/regex_traits_defaults.cpp -o boost_regex/regex_traits_defaults.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/static_mutex.cpp -o boost_regex/static_mutex.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/usinstances.cpp -o boost_regex/usinstances.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/w32_regex_traits.cpp -o boost_regex/w32_regex_traits.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/wc_regex_traits.cpp -o boost_regex/wc_regex_traits.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/wide_posix_api.cpp -o boost_regex/wide_posix_api.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/winstances.cpp -o boost_regex/winstances.o
mkdir -p "C:/biocbld/bbs-3.2-bioc/R/library/flowCore/lib/i386"
ar rs "C:/biocbld/bbs-3.2-bioc/R/library/flowCore/lib/i386/libboost_regex.a" boost_regex/c_regex_traits.o boost_regex/cpp_regex_traits.o boost_regex/cregex.o boost_regex/fileiter.o boost_regex/icu.o boost_regex/instances.o boost_regex/posix_api.o boost_regex/regex.o boost_regex/regex_debug.o boost_regex/regex_raw_buffer.o boost_regex/regex_traits_defaults.o boost_regex/static_mutex.o boost_regex/usinstances.o boost_regex/w32_regex_traits.o boost_regex/wc_regex_traits.o boost_regex/wide_posix_api.o boost_regex/winstances.o
C:\Rtools\gcc-4.6.3\bin\ar.exe: creating C:/biocbld/bbs-3.2-bioc/R/library/flowCore/lib/i386/libboost_regex.a
g++ -m32 -shared -s -static-libgcc -o flowCore.dll tmp.def FastLogicle.o Hyperlog.o Logicle.o RcppExports.o biexponential.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o init.o logicleTransform.o pairVectorRcppWrap.o uint2double.o zeroin.o C:/biocbld/bbs-3.2-bioc/R/library/flowCore/lib/i386/libboost_regex.a -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LC:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to C:/biocbld/bbs-3.2-bioc/R/library/flowCore/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'HowTo-flowCore.Rnw' 
** testing if installed package can be loaded

install for x64

* installing to library 'C:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'flowCore' ...
** libs
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c FastLogicle.cpp -o FastLogicle.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c Hyperlog.cpp -o Hyperlog.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c Logicle.cpp -o Logicle.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
gcc -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c biexponential.c -o biexponential.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c fcsTextParse.cpp -o fcsTextParse.o
fcsTextParse.cpp:44:80: warning: multi-line comment [-Wcomment]
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c hyperlogTransform.cpp -o hyperlogTransform.o
gcc -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c inPolygon.c -o inPolygon.o
gcc -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c inPolytope.c -o inPolytope.o
gcc -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c logicleTransform.cpp -o logicleTransform.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c pairVectorRcppWrap.cpp -o pairVectorRcppWrap.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c uint2double.cpp -o uint2double.o
gcc -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c zeroin.c -o zeroin.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/c_regex_traits.cpp -o boost_regex/c_regex_traits.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/cpp_regex_traits.cpp -o boost_regex/cpp_regex_traits.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/cregex.cpp -o boost_regex/cregex.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/fileiter.cpp -o boost_regex/fileiter.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/icu.cpp -o boost_regex/icu.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/instances.cpp -o boost_regex/instances.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/posix_api.cpp -o boost_regex/posix_api.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/regex.cpp -o boost_regex/regex.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/regex_debug.cpp -o boost_regex/regex_debug.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/regex_raw_buffer.cpp -o boost_regex/regex_raw_buffer.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/regex_traits_defaults.cpp -o boost_regex/regex_traits_defaults.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/static_mutex.cpp -o boost_regex/static_mutex.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/usinstances.cpp -o boost_regex/usinstances.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/w32_regex_traits.cpp -o boost_regex/w32_regex_traits.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/wc_regex_traits.cpp -o boost_regex/wc_regex_traits.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/wide_posix_api.cpp -o boost_regex/wide_posix_api.o
g++ -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"C:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c boost_regex/winstances.cpp -o boost_regex/winstances.o
mkdir -p "C:/biocbld/bbs-3.2-bioc/R/library/flowCore/lib/x64"
ar rs "C:/biocbld/bbs-3.2-bioc/R/library/flowCore/lib/x64/libboost_regex.a" boost_regex/c_regex_traits.o boost_regex/cpp_regex_traits.o boost_regex/cregex.o boost_regex/fileiter.o boost_regex/icu.o boost_regex/instances.o boost_regex/posix_api.o boost_regex/regex.o boost_regex/regex_debug.o boost_regex/regex_raw_buffer.o boost_regex/regex_traits_defaults.o boost_regex/static_mutex.o boost_regex/usinstances.o boost_regex/w32_regex_traits.o boost_regex/wc_regex_traits.o boost_regex/wide_posix_api.o boost_regex/winstances.o
C:\Rtools\gcc-4.6.3\bin\ar.exe: creating C:/biocbld/bbs-3.2-bioc/R/library/flowCore/lib/x64/libboost_regex.a
g++ -m64 -shared -s -static-libgcc -o flowCore.dll tmp.def FastLogicle.o Hyperlog.o Logicle.o RcppExports.o biexponential.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o init.o logicleTransform.o pairVectorRcppWrap.o uint2double.o zeroin.o C:/biocbld/bbs-3.2-bioc/R/library/flowCore/lib/x64/libboost_regex.a -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LC:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to C:/biocbld/bbs-3.2-bioc/R/library/flowCore/libs/x64
** testing if installed package can be loaded
* DONE (flowCore)