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BioC 3.2: CHECK report for quantro on moscato1

This page was generated on 2016-04-22 11:08:16 -0700 (Fri, 22 Apr 2016).

Package 825/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
quantro 1.4.0
Stephanie Hicks
Snapshot Date: 2016-04-21 16:20:06 -0700 (Thu, 21 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/quantro
Last Changed Rev: 109589 / Revision: 116677
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: quantro
Version: 1.4.0
Command: rm -rf quantro.buildbin-libdir quantro.Rcheck && mkdir quantro.buildbin-libdir quantro.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=quantro.buildbin-libdir quantro_1.4.0.tar.gz >quantro.Rcheck\00install.out 2>&1 && cp quantro.Rcheck\00install.out quantro-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=quantro.buildbin-libdir --install="check:quantro-install.out" --force-multiarch --no-vignettes --timings quantro_1.4.0.tar.gz
StartedAt: 2016-04-22 06:50:30 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 07:00:20 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 590.1 seconds
RetCode: 0
Status:  OK  
CheckDir: quantro.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf quantro.buildbin-libdir quantro.Rcheck && mkdir quantro.buildbin-libdir quantro.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=quantro.buildbin-libdir quantro_1.4.0.tar.gz >quantro.Rcheck\00install.out 2>&1 && cp quantro.Rcheck\00install.out quantro-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=quantro.buildbin-libdir --install="check:quantro-install.out" --force-multiarch --no-vignettes --timings quantro_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/quantro.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'quantro/DESCRIPTION' ... OK
* this is package 'quantro' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'quantro' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... NOTE
The following directory looks like a leftover from 'knitr':
  'figure'
Please remove from your package.
* checking examples ...
** running examples for arch 'i386' ... [38s] OK
** running examples for arch 'x64' ... [34s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [42s]
 [43s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [50s]
 [50s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-bioc/meat/quantro.Rcheck/00check.log'
for details.


quantro.Rcheck/00install.out:


install for i386

* installing *source* package 'quantro' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'quantro' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'quantro' as quantro_1.4.0.zip
* DONE (quantro)

quantro.Rcheck/examples_i386/quantro-Ex.timings:

nameusersystemelapsed
MSbetween3.370.133.49
MSwithin1.790.111.90
anova1.840.051.89
matboxplot1.390.031.42
matdensity1.700.042.64
quantro1.940.051.98
quantroPlot000
quantroPvalPerm2.140.032.17
quantroStat2.200.052.24
quantroStatPerm2.140.042.17
summary1.690.061.75

quantro.Rcheck/examples_x64/quantro-Ex.timings:

nameusersystemelapsed
MSbetween2.840.002.84
MSwithin2.010.072.07
anova1.720.062.01
matboxplot1.650.022.06
matdensity1.640.061.70
quantro2.040.032.07
quantroPlot000
quantroPvalPerm1.990.032.03
quantroStat1.540.061.61
quantroStatPerm1.560.061.62
summary2.120.072.19