BioC experimental data: CHECK report for MEDIPSData on zin1

Package: MEDIPSData

Version: 1.5.0

Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings MEDIPSData_1.5.0.tar.gz

StartedAt: 2015-08-22 08:19:57 -0700 (Sat, 22 Aug 2015)

EndedAt: 2015-08-22 08:20:08 -0700 (Sat, 22 Aug 2015)

EllapsedTime: 11.0 seconds

RetCode: 0

Status:  OK

CheckDir: MEDIPSData.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings MEDIPSData_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.2-data-experiment/meat/MEDIPSData.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MEDIPSData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MEDIPSData’ version ‘1.5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MEDIPSData’ can be installed ... [1s/1s] OK
* checking installed package size ... NOTE
  installed size is 47.1Mb
  sub-directories of 1Mb or more:
    data     11.3Mb
    extdata  35.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Error in .requirePackage(package) : 
    unable to find required package 'MEDIPS'
  Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
  Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [0s/0s] OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.2-data-experiment/meat/MEDIPSData.Rcheck/00check.log’
for details.

* installing *source* package ‘MEDIPSData’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (MEDIPSData)

name	user	system	elapsed
CS	0.001	0.000	0.001
DE_Input	0.000	0.004	0.001
DE_MeDIP	0	0	0
hESCs_Input	0.000	0.000	0.001
hESCs_MeDIP	0	0	0
mart_gene	0.000	0.000	0.001
resultTable	0.001	0.000	0.001