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BioC experimental data: CHECK report for estrogen on windows1.bioconductor.org

This page was generated on 2015-10-24 18:52:42 -0400 (Sat, 24 Oct 2015).

Package 77/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
estrogen 1.16.0
R. Gentleman
Snapshot Date: 2015-10-24 12:50:03 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/estrogen
Last Changed Rev: 3460 / Revision: 3473
Last Changed Date: 2015-10-13 16:14:23 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: estrogen
Version: 1.16.0
Command: rm -rf estrogen.buildbin-libdir estrogen.Rcheck && mkdir estrogen.buildbin-libdir estrogen.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=estrogen.buildbin-libdir estrogen_1.16.0.tar.gz >estrogen.Rcheck\00install.out 2>&1 && cp estrogen.Rcheck\00install.out estrogen-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=estrogen.buildbin-libdir --install="check:estrogen-install.out" --force-multiarch --no-vignettes --timings estrogen_1.16.0.tar.gz
StartedAt: 2015-10-24 14:47:01 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 14:48:14 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 73.2 seconds
RetCode: 0
Status:  OK  
CheckDir: estrogen.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf estrogen.buildbin-libdir estrogen.Rcheck && mkdir estrogen.buildbin-libdir estrogen.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=estrogen.buildbin-libdir estrogen_1.16.0.tar.gz >estrogen.Rcheck\00install.out 2>&1 && cp estrogen.Rcheck\00install.out estrogen-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=estrogen.buildbin-libdir --install="check:estrogen-install.out" --force-multiarch --no-vignettes --timings estrogen_1.16.0.tar.gz
###
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* using log directory 'C:/biocbld/bbs-3.2-data-experiment/meat/estrogen.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'estrogen/DESCRIPTION' ... OK
* this is package 'estrogen' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'estrogen' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 83.1Mb
  sub-directories of 1Mb or more:
    extdata  82.4Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'affy'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'affy'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/biocbld/bbs-3.2-data-experiment/meat/estrogen.Rcheck/00check.log'
for details.


estrogen.Rcheck/00install.out:


install for i386

* installing *source* package 'estrogen' ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'utils::head' when loading 'hgu95av2cdf'
Warning: replacing previous import by 'utils::tail' when loading 'hgu95av2cdf'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'estrogen' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'estrogen' as estrogen_1.16.0.zip
* DONE (estrogen)