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BioC experimental data: CHECK report for lungExpression on windows1.bioconductor.org

This page was generated on 2015-10-24 18:52:44 -0400 (Sat, 24 Oct 2015).

Package 148/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lungExpression 0.8.0
Robert Scharpf
Snapshot Date: 2015-10-24 12:50:03 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/lungExpression
Last Changed Rev: 3460 / Revision: 3473
Last Changed Date: 2015-10-13 16:14:23 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: lungExpression
Version: 0.8.0
Command: rm -rf lungExpression.buildbin-libdir lungExpression.Rcheck && mkdir lungExpression.buildbin-libdir lungExpression.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=lungExpression.buildbin-libdir lungExpression_0.8.0.tar.gz >lungExpression.Rcheck\00install.out 2>&1 && cp lungExpression.Rcheck\00install.out lungExpression-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=lungExpression.buildbin-libdir --install="check:lungExpression-install.out" --force-multiarch --no-vignettes --timings lungExpression_0.8.0.tar.gz
StartedAt: 2015-10-24 15:11:16 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 15:11:39 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 22.7 seconds
RetCode: 0
Status:  OK  
CheckDir: lungExpression.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf lungExpression.buildbin-libdir lungExpression.Rcheck && mkdir lungExpression.buildbin-libdir lungExpression.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=lungExpression.buildbin-libdir lungExpression_0.8.0.tar.gz >lungExpression.Rcheck\00install.out 2>&1 && cp lungExpression.Rcheck\00install.out lungExpression-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=lungExpression.buildbin-libdir --install="check:lungExpression-install.out" --force-multiarch --no-vignettes --timings lungExpression_0.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/biocbld/bbs-3.2-data-experiment/meat/lungExpression.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'lungExpression/DESCRIPTION' ... OK
* this is package 'lungExpression' version '0.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'lungExpression' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   5.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: harvard.Rd:10-11: Dropping empty section \format
prepare_Rd: harvard.Rd:17-18: Dropping empty section \source
prepare_Rd: michigan.Rd:10-11: Dropping empty section \format
prepare_Rd: michigan.Rd:17-18: Dropping empty section \source
prepare_Rd: stanford.Rd:9-10: Dropping empty section \format
prepare_Rd: stanford.Rd:16-18: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [1s] OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/biocbld/bbs-3.2-data-experiment/meat/lungExpression.Rcheck/00check.log'
for details.


lungExpression.Rcheck/00install.out:


install for i386

* installing *source* package 'lungExpression' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'lungExpression' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'lungExpression' as lungExpression_0.8.0.zip
* DONE (lungExpression)

lungExpression.Rcheck/examples_i386/lungExpression-Ex.timings:

nameusersystemelapsed
harvard0.080.000.08
michigan0.010.000.01
stanford0.020.010.03

lungExpression.Rcheck/examples_x64/lungExpression-Ex.timings:

nameusersystemelapsed
harvard0.10.00.1
michigan0.000.020.01
stanford0.020.000.01