Back to the "Multiple platform build/check report"

BioC experimental data: CHECK report for pRolocdata on windows1.bioconductor.org

This page was generated on 2015-10-24 18:52:50 -0400 (Sat, 24 Oct 2015).

Package 191/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pRolocdata 1.8.0
Laurent Gatto
Snapshot Date: 2015-10-24 12:50:03 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/pRolocdata
Last Changed Rev: 3460 / Revision: 3473
Last Changed Date: 2015-10-13 16:14:23 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK 

Summary

Package: pRolocdata
Version: 1.8.0
Command: rm -rf pRolocdata.buildbin-libdir pRolocdata.Rcheck && mkdir pRolocdata.buildbin-libdir pRolocdata.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pRolocdata.buildbin-libdir pRolocdata_1.8.0.tar.gz >pRolocdata.Rcheck\00install.out 2>&1 && cp pRolocdata.Rcheck\00install.out pRolocdata-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=pRolocdata.buildbin-libdir --install="check:pRolocdata-install.out" --force-multiarch --no-vignettes --timings pRolocdata_1.8.0.tar.gz
StartedAt: 2015-10-24 15:23:28 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 15:25:58 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 150.0 seconds
RetCode: 0
Status:  OK  
CheckDir: pRolocdata.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf pRolocdata.buildbin-libdir pRolocdata.Rcheck && mkdir pRolocdata.buildbin-libdir pRolocdata.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pRolocdata.buildbin-libdir pRolocdata_1.8.0.tar.gz >pRolocdata.Rcheck\00install.out 2>&1 && cp pRolocdata.Rcheck\00install.out pRolocdata-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=pRolocdata.buildbin-libdir --install="check:pRolocdata-install.out" --force-multiarch --no-vignettes --timings pRolocdata_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/biocbld/bbs-3.2-data-experiment/meat/pRolocdata.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pRolocdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pRolocdata' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pRolocdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 23.8Mb
  sub-directories of 1Mb or more:
    data      7.9Mb
    extdata  15.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [15s] OK
Examples with CPU or elapsed time > 5s
          user system elapsed
fabre2015 3.78   0.25    5.29
** running examples for arch 'x64' ... [16s] OK
Examples with CPU or elapsed time > 5s
          user system elapsed
fabre2015 4.72   0.26    5.05
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/biocbld/bbs-3.2-data-experiment/meat/pRolocdata.Rcheck/00check.log'
for details.


pRolocdata.Rcheck/00install.out:


install for i386

* installing *source* package 'pRolocdata' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'pRolocdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pRolocdata' as pRolocdata_1.8.0.zip
* DONE (pRolocdata)

pRolocdata.Rcheck/examples_i386/pRolocdata-Ex.timings:

nameusersystemelapsed
E14TG2a0.040.000.03
andy20110.20.00.2
at_chloro0.090.000.10
dunkley20060.020.000.01
fabre20153.780.255.29
foster20060.020.010.03
groen20143.180.073.25
hall20090.210.010.22
havugimana20120.360.000.36
hyperLOPIT20150.060.020.08
kirkwood20130.050.000.05
kristensen20120.030.000.03
nikolovski20120.610.030.64
nikolovski20140.330.010.34
pRolocdata000
pRolocmetadata0.030.000.03
tan20090.020.000.01
trotter20100.260.050.32

pRolocdata.Rcheck/examples_x64/pRolocdata-Ex.timings:

nameusersystemelapsed
E14TG2a0.040.000.03
andy20110.060.000.06
at_chloro0.130.000.13
dunkley20060.010.000.01
fabre20154.720.265.05
foster20060.080.000.08
groen20143.790.033.83
hall20090.250.040.28
havugimana20120.470.000.47
hyperLOPIT20150.070.010.08
kirkwood20130.030.000.03
kristensen20120.030.000.03
nikolovski20120.780.000.78
nikolovski20140.400.000.39
pRolocdata0.010.000.01
pRolocmetadata0.020.000.02
tan20090.030.000.03
trotter20100.310.020.33