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BioC experimental data: CHECK report for systemPipeRdata on windows1.bioconductor.org

This page was generated on 2015-10-24 18:52:59 -0400 (Sat, 24 Oct 2015).

Package 237/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
systemPipeRdata 1.0.0
Thomas Girke
Snapshot Date: 2015-10-24 12:50:03 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/systemPipeRdata
Last Changed Rev: 3460 / Revision: 3473
Last Changed Date: 2015-10-13 16:14:23 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: systemPipeRdata
Version: 1.0.0
Command: rm -rf systemPipeRdata.buildbin-libdir systemPipeRdata.Rcheck && mkdir systemPipeRdata.buildbin-libdir systemPipeRdata.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=systemPipeRdata.buildbin-libdir systemPipeRdata_1.0.0.tar.gz >systemPipeRdata.Rcheck\00install.out 2>&1 && cp systemPipeRdata.Rcheck\00install.out systemPipeRdata-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=systemPipeRdata.buildbin-libdir --install="check:systemPipeRdata-install.out" --force-multiarch --no-vignettes --timings systemPipeRdata_1.0.0.tar.gz
StartedAt: 2015-10-24 15:41:45 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 15:43:17 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 92.4 seconds
RetCode: 0
Status:  OK  
CheckDir: systemPipeRdata.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf systemPipeRdata.buildbin-libdir systemPipeRdata.Rcheck && mkdir systemPipeRdata.buildbin-libdir systemPipeRdata.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=systemPipeRdata.buildbin-libdir systemPipeRdata_1.0.0.tar.gz >systemPipeRdata.Rcheck\00install.out 2>&1 && cp systemPipeRdata.Rcheck\00install.out systemPipeRdata-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=systemPipeRdata.buildbin-libdir --install="check:systemPipeRdata-install.out" --force-multiarch --no-vignettes --timings systemPipeRdata_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/biocbld/bbs-3.2-data-experiment/meat/systemPipeRdata.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'systemPipeRdata/DESCRIPTION' ... OK
* this is package 'systemPipeRdata' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  inst/extdata/param/.BatchJobs.R
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... NOTE
Found the following non-portable file paths:
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/documentation_systemPipeR_c79d7d0bccd16d6a1a8601f6dcaaa9b4.RData
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/documentation_systemPipeR_c79d7d0bccd16d6a1a8601f6dcaaa9b4.rdb
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/documentation_systemPipeR_c79d7d0bccd16d6a1a8601f6dcaaa9b4.rdx
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/documentation_systemPipeRdata_bbf89884b369a56c0e25a0eee2d5c67b.RData
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/documentation_systemPipeRdata_bbf89884b369a56c0e25a0eee2d5c67b.rdb
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/documentation_systemPipeRdata_bbf89884b369a56c0e25a0eee2d5c67b.rdx
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/generate_workenvir_0c6d4c51337d681e880eae4946c2f74f.RData
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/generate_workenvir_0c6d4c51337d681e880eae4946c2f74f.rdb
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/generate_workenvir_0c6d4c51337d681e880eae4946c2f74f.rdx
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/generate_workenvir_from_shell_e6af8809e77cb0c390cb6f3f16deb9ec.RData
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/generate_workenvir_from_shell_e6af8809e77cb0c390cb6f3f16deb9ec.rdb
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/generate_workenvir_from_shell_e6af8809e77cb0c390cb6f3f16deb9ec.rdx
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/load_systemPipeR_e12409b4ef174e7562368018651bd280.RData
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/load_systemPipeR_e12409b4ef174e7562368018651bd280.rdb
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/load_systemPipeR_e12409b4ef174e7562368018651bd280.rdx
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/load_systemPipeRdata_94c2325c16bfad2a6fc456bd6bcab330.RData
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/load_systemPipeRdata_94c2325c16bfad2a6fc456bd6bcab330.rdb
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/load_systemPipeRdata_94c2325c16bfad2a6fc456bd6bcab330.rdx
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/return_samplepaths_ccb111a1e3b525d7cd78bc7152dd7503.RData
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/return_samplepaths_ccb111a1e3b525d7cd78bc7152dd7503.rdb
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/return_samplepaths_ccb111a1e3b525d7cd78bc7152dd7503.rdx
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/sessionInfo_b3166f2822b5a4f7707049554463255b.RData
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/sessionInfo_b3166f2822b5a4f7707049554463255b.rdb
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/sessionInfo_b3166f2822b5a4f7707049554463255b.rdx
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/workflow_template_structure_1b800df330cac6ca995fe2852ba3b98e.RData
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/workflow_template_structure_1b800df330cac6ca995fe2852ba3b98e.rdb
  systemPipeRdata/vignettes/systemPipeRdata_cache/html/workflow_template_structure_1b800df330cac6ca995fe2852ba3b98e.rdx

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking whether package 'systemPipeRdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 236.6Mb
  sub-directories of 1Mb or more:
    extdata  236.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [0s] OK
** running examples for arch 'x64' ... [0s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [0s]
 [1s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [0s]
 [1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/biocbld/bbs-3.2-data-experiment/meat/systemPipeRdata.Rcheck/00check.log'
for details.


systemPipeRdata.Rcheck/00install.out:


install for i386

* installing *source* package 'systemPipeRdata' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'systemPipeRdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'systemPipeRdata' as systemPipeRdata_1.0.0.zip
* DONE (systemPipeRdata)

systemPipeRdata.Rcheck/examples_i386/systemPipeRdata-Ex.timings:

nameusersystemelapsed
genWorkenvir000
pathList0.020.000.02

systemPipeRdata.Rcheck/examples_x64/systemPipeRdata-Ex.timings:

nameusersystemelapsed
genWorkenvir0.000.020.02
pathList000