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BioC experimental data: CHECK report for waveTilingData on windows1.bioconductor.org

This page was generated on 2015-10-24 18:52:50 -0400 (Sat, 24 Oct 2015).

Package 248/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
waveTilingData 1.6.0
Kristof De Beuf
Snapshot Date: 2015-10-24 12:50:03 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/waveTilingData
Last Changed Rev: 3460 / Revision: 3473
Last Changed Date: 2015-10-13 16:14:23 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: waveTilingData
Version: 1.6.0
Command: rm -rf waveTilingData.buildbin-libdir waveTilingData.Rcheck && mkdir waveTilingData.buildbin-libdir waveTilingData.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=waveTilingData.buildbin-libdir waveTilingData_1.6.0.tar.gz >waveTilingData.Rcheck\00install.out 2>&1 && cp waveTilingData.Rcheck\00install.out waveTilingData-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=waveTilingData.buildbin-libdir --install="check:waveTilingData-install.out" --force-multiarch --no-vignettes --timings waveTilingData_1.6.0.tar.gz
StartedAt: 2015-10-24 15:44:26 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 15:47:57 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 211.1 seconds
RetCode: 0
Status:  OK  
CheckDir: waveTilingData.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf waveTilingData.buildbin-libdir waveTilingData.Rcheck && mkdir waveTilingData.buildbin-libdir waveTilingData.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=waveTilingData.buildbin-libdir waveTilingData_1.6.0.tar.gz >waveTilingData.Rcheck\00install.out 2>&1 && cp waveTilingData.Rcheck\00install.out waveTilingData-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=waveTilingData.buildbin-libdir --install="check:waveTilingData-install.out" --force-multiarch --no-vignettes --timings waveTilingData_1.6.0.tar.gz
###
##############################################################################
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* using log directory 'C:/biocbld/bbs-3.2-data-experiment/meat/waveTilingData.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'waveTilingData/DESCRIPTION' ... OK
* this is package 'waveTilingData' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'waveTilingData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 240.8Mb
  sub-directories of 1Mb or more:
    data  240.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
  Error in .requirePackage(package) : 
    unable to find required package 'waveTiling'
  Calls: <Anonymous> ... .findInheritedMethods -> getClass -> getClassDef -> .requirePackage
  Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [53s] OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
leafdev                  25.51   0.56   26.10
leafdevBQ                16.43   0.45   16.87
leafdevMapAndFilterTAIR9  8.36   0.07    8.45
** running examples for arch 'x64' ... [48s] OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
leafdev                  23.34   0.47   23.81
leafdevBQ                14.58   0.30   14.87
leafdevMapAndFilterTAIR9  6.91   0.12    7.03
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/biocbld/bbs-3.2-data-experiment/meat/waveTilingData.Rcheck/00check.log'
for details.


waveTilingData.Rcheck/00install.out:


install for i386

* installing *source* package 'waveTilingData' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'waveTilingData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'waveTilingData' as waveTilingData_1.6.0.zip
* DONE (waveTilingData)

waveTilingData.Rcheck/examples_i386/waveTilingData-Ex.timings:

nameusersystemelapsed
leafdev25.51 0.5626.10
leafdevBQ16.43 0.4516.87
leafdevFit0.710.060.82
leafdevInfCompare0.750.040.78
leafdevMapAndFilterTAIR98.360.078.45

waveTilingData.Rcheck/examples_x64/waveTilingData-Ex.timings:

nameusersystemelapsed
leafdev23.34 0.4723.81
leafdevBQ14.58 0.3014.87
leafdevFit0.650.040.71
leafdevInfCompare0.690.020.70
leafdevMapAndFilterTAIR96.910.127.03